cytoflowgui.workflow.operations.tsne#

class cytoflowgui.workflow.operations.tsne.Channel[source]#

Bases: HasTraits

class cytoflowgui.workflow.operations.tsne.tSNEWorkflowOp[source]#

Bases: WorkflowOperation, tSNEOp

estimate(experiment)[source]#

Estimate the decomposition

Parameters:

  • experiment (Experiment) – The Experiment to use to estimate the k-means clusters

  • subset (str (default = None)) – A Python expression that specifies a subset of the data in experiment to use to parameterize the operation.

apply(experiment)[source]#

Apply the tSNE decomposition to the data.

Returns:

a new Experiment with additional Experiment.channels named name_1 and name_2

Return type:

Experiment

clear_estimate()[source]#
get_notebook_code(idx)[source]#