cytoflowgui.workflow.operations package

cytoflowgui.workflow.operations

Submodules

• cytoflowgui.workflow.operations.autofluorescence
• AutofluorescenceWorkflowOp
  • AutofluorescenceWorkflowOp.default_view()
  • AutofluorescenceWorkflowOp.estimate()
  • AutofluorescenceWorkflowOp.apply()
  • AutofluorescenceWorkflowOp.clear_estimate()
  • AutofluorescenceWorkflowOp.should_apply()
  • AutofluorescenceWorkflowOp.should_clear_estimate()
  • AutofluorescenceWorkflowOp.get_notebook_code()
• AutofluorescenceWorkflowView
  • AutofluorescenceWorkflowView.should_plot()
  • AutofluorescenceWorkflowView.get_notebook_code()
• cytoflowgui.workflow.operations.bead_calibration
• Unit
• BeadCalibrationWorkflowOp
  • BeadCalibrationWorkflowOp.default_view()
  • BeadCalibrationWorkflowOp.apply()
  • BeadCalibrationWorkflowOp.estimate()
  • BeadCalibrationWorkflowOp.should_clear_estimate()
  • BeadCalibrationWorkflowOp.clear_estimate()
  • BeadCalibrationWorkflowOp.get_notebook_code()
• BeadCalibrationWorkflowView
  • BeadCalibrationWorkflowView.should_plot()
  • BeadCalibrationWorkflowView.get_notebook_code()
• cytoflowgui.workflow.operations.binning
• BinningWorkflowOp
  • BinningWorkflowOp.default_view()
  • BinningWorkflowOp.clear_estimate()
  • BinningWorkflowOp.get_notebook_code()
• BinningWorkflowView
  • BinningWorkflowView.get_notebook_code()
• cytoflowgui.workflow.operations.bleedthrough_linear
• Channel
• Spillover
• BleedthroughLinearWorkflowOp
  • BleedthroughLinearWorkflowOp.default_view()
  • BleedthroughLinearWorkflowOp.estimate()
  • BleedthroughLinearWorkflowOp.apply()
  • BleedthroughLinearWorkflowOp.should_clear_estimate()
  • BleedthroughLinearWorkflowOp.clear_estimate()
  • BleedthroughLinearWorkflowOp.get_notebook_code()
• BleedthroughLinearWorkflowView
  • BleedthroughLinearWorkflowView.should_plot()
  • BleedthroughLinearWorkflowView.get_notebook_code()
• CategoryOpSubset
  • CategoryOpSubset.trait_context()
• CategoryWorkflowOp
  • CategoryWorkflowOp.get_notebook_code()
  • CategoryWorkflowOp.trait_context()
• cytoflowgui.workflow.operations.channel_stat
• mean_95ci()
• geomean_95ci()
• ChannelStatisticWorkflowOp
  • ChannelStatisticWorkflowOp.fill
  • ChannelStatisticWorkflowOp.apply()
  • ChannelStatisticWorkflowOp.clear_estimate()
  • ChannelStatisticWorkflowOp.get_notebook_code()
• cytoflowgui.workflow.operations.color_translation
• Control
• ColorTranslationWorkflowOp
  • ColorTranslationWorkflowOp.default_view()
  • ColorTranslationWorkflowOp.estimate()
  • ColorTranslationWorkflowOp.apply()
  • ColorTranslationWorkflowOp.should_clear_estimate()
  • ColorTranslationWorkflowOp.clear_estimate()
  • ColorTranslationWorkflowOp.get_notebook_code()
• ColorTranslationWorkflowView
  • ColorTranslationWorkflowView.should_plot()
  • ColorTranslationWorkflowView.get_notebook_code()
• cytoflowgui.workflow.operations.density
• DensityGateWorkflowOp
  • DensityGateWorkflowOp.default_view()
  • DensityGateWorkflowOp.clear_estimate()
  • DensityGateWorkflowOp.apply()
  • DensityGateWorkflowOp.get_notebook_code()
• DensityGateWorkflowView
  • DensityGateWorkflowView.should_plot()
  • DensityGateWorkflowView.get_notebook_code()
• cytoflowgui.workflow.operations.flowclean
• Channel
• FlowCleanWorkflowOp
  • FlowCleanWorkflowOp.estimate()
  • FlowCleanWorkflowOp.default_view()
  • FlowCleanWorkflowOp.apply()
  • FlowCleanWorkflowOp.clear_estimate()
  • FlowCleanWorkflowOp.get_notebook_code()
• FlowCleanWorkflowView
  • FlowCleanWorkflowView.plot()
  • FlowCleanWorkflowView.get_notebook_code()
• cytoflowgui.workflow.operations.flowpeaks
• FlowPeaksWorkflowOp
  • FlowPeaksWorkflowOp.default_view()
  • FlowPeaksWorkflowOp.estimate()
  • FlowPeaksWorkflowOp.apply()
  • FlowPeaksWorkflowOp.clear_estimate()
  • FlowPeaksWorkflowOp.get_notebook_code()
• FlowPeaksWorkflowView
  • FlowPeaksWorkflowView.id
  • FlowPeaksWorkflowView.friendly_id
  • FlowPeaksWorkflowView.plot()
  • FlowPeaksWorkflowView.get_notebook_code()
• cytoflowgui.workflow.operations.gaussian_1d
• GaussianMixture1DWorkflowOp
  • GaussianMixture1DWorkflowOp.estimate()
  • GaussianMixture1DWorkflowOp.apply()
  • GaussianMixture1DWorkflowOp.default_view()
  • GaussianMixture1DWorkflowOp.clear_estimate()
  • GaussianMixture1DWorkflowOp.get_notebook_code()
• GaussianMixture1DWorkflowView
  • GaussianMixture1DWorkflowView.plot()
  • GaussianMixture1DWorkflowView.get_notebook_code()
• cytoflowgui.workflow.operations.gaussian_2d
• GaussianMixture2DWorkflowOp
  • GaussianMixture2DWorkflowOp.default_view()
  • GaussianMixture2DWorkflowOp.estimate()
  • GaussianMixture2DWorkflowOp.apply()
  • GaussianMixture2DWorkflowOp.clear_estimate()
  • GaussianMixture2DWorkflowOp.get_notebook_code()
• GaussianMixture2DWorkflowView
  • GaussianMixture2DWorkflowView.plot()
  • GaussianMixture2DWorkflowView.get_notebook_code()
• HierarchyGate
• HierarchyWorkflowOp
  • HierarchyWorkflowOp.get_notebook_code()
• cytoflowgui.workflow.operations.import_op
• ValidPythonIdentifier
  • ValidPythonIdentifier.info_text
  • ValidPythonIdentifier.validate()
• Channel
• ImportWorkflowOp
  • ImportWorkflowOp.reset_channels()
  • ImportWorkflowOp.estimate()
  • ImportWorkflowOp.apply()
  • ImportWorkflowOp.clear_estimate()
  • ImportWorkflowOp.get_notebook_code()
• cytoflowgui.workflow.operations.kmeans
• KMeansWorkflowOp
  • KMeansWorkflowOp.default_view()
  • KMeansWorkflowOp.estimate()
  • KMeansWorkflowOp.apply()
  • KMeansWorkflowOp.clear_estimate()
  • KMeansWorkflowOp.get_notebook_code()
• KMeansWorkflowView
  • KMeansWorkflowView.id
  • KMeansWorkflowView.friendly_id
  • KMeansWorkflowView.plot()
  • KMeansWorkflowView.enum_plots()
  • KMeansWorkflowView.get_notebook_code()
• cytoflowgui.workflow.operations.merge_stat
• MergeStatisticsWorkflowOp
  • MergeStatisticsWorkflowOp.apply()
  • MergeStatisticsWorkflowOp.clear_estimate()
  • MergeStatisticsWorkflowOp.get_notebook_code()
• cytoflowgui.workflow.operations.mst
• MSTWorkflowSelectionView
  • MSTWorkflowSelectionView.clear_estimate()
  • MSTWorkflowSelectionView.get_notebook_code()
• MSTWorkflowOp
  • MSTWorkflowOp.default_view()
  • MSTWorkflowOp.get_notebook_code()
• cytoflowgui.workflow.operations.multi_channel_stat
• Function
• MultiChannelStatisticWorkflowOp
  • MultiChannelStatisticWorkflowOp.fill
  • MultiChannelStatisticWorkflowOp.apply()
  • MultiChannelStatisticWorkflowOp.clear_estimate()
  • MultiChannelStatisticWorkflowOp.get_notebook_code()
• cytoflowgui.workflow.operations.operation_base
• IWorkflowOperation
  • IWorkflowOperation.do_estimate
  • IWorkflowOperation.changed
  • IWorkflowOperation.should_apply()
  • IWorkflowOperation.should_clear_estimate()
  • IWorkflowOperation.clear_estimate()
  • IWorkflowOperation.get_notebook_code()
• WorkflowOperation
  • WorkflowOperation.should_apply()
  • WorkflowOperation.should_clear_estimate()
  • WorkflowOperation.clear_estimate()
  • WorkflowOperation.get_notebook_code()
• cytoflowgui.workflow.operations.pca
• Channel
• PCAWorkflowOp
  • PCAWorkflowOp.estimate()
  • PCAWorkflowOp.apply()
  • PCAWorkflowOp.clear_estimate()
  • PCAWorkflowOp.get_notebook_code()
• cytoflowgui.workflow.operations.polygon
• PolygonPlotParams
• ScatterplotPolygonSelectionWorkflowView
• DensityPolygonSelectionWorkflowView
• PolygonSelectionView
  • PolygonSelectionView.clear_estimate()
  • PolygonSelectionView.plot()
  • PolygonSelectionView.get_notebook_code()
• PolygonWorkflowOp
  • PolygonWorkflowOp.default_view()
  • PolygonWorkflowOp.get_notebook_code()
• cytoflowgui.workflow.operations.quad
• QuadSelectionView
  • QuadSelectionView.clear_estimate()
  • QuadSelectionView.get_notebook_code()
• QuadWorkflowOp
  • QuadWorkflowOp.default_view()
  • QuadWorkflowOp.clear_estimate()
  • QuadWorkflowOp.get_notebook_code()
• cytoflowgui.workflow.operations.range
• RangeSelectionView
  • RangeSelectionView.clear_estimate()
  • RangeSelectionView.get_notebook_code()
• RangeWorkflowOp
  • RangeWorkflowOp.default_view()
  • RangeWorkflowOp.get_notebook_code()
• cytoflowgui.workflow.operations.range2d
• Range2DPlotParams
• ScatterPlotRangeSelection2DWorkflowView
• DensityRangeSelection2DWorkflowView
• Range2DSelectionView
  • Range2DSelectionView.clear_estimate()
  • Range2DSelectionView.plot()
  • Range2DSelectionView.get_notebook_code()
• Range2DWorkflowOp
  • Range2DWorkflowOp.default_view()
  • Range2DWorkflowOp.get_notebook_code()
• cytoflowgui.workflow.operations.ratio
• RatioWorkflowOp
  • RatioWorkflowOp.clear_estimate()
  • RatioWorkflowOp.get_notebook_code()
• cytoflowgui.workflow.operations.register
• Channel
• RegistrationWorkflowOp
  • RegistrationWorkflowOp.default_view()
  • RegistrationWorkflowOp.estimate()
  • RegistrationWorkflowOp.should_clear_estimate()
  • RegistrationWorkflowOp.clear_estimate()
  • RegistrationWorkflowOp.get_notebook_code()
• RegistrationDiagnosticWorkflowView
  • RegistrationDiagnosticWorkflowView.get_notebook_code()
• cytoflowgui.workflow.operations.som
• Channel
• SOMWorkflowView
  • SOMWorkflowView.should_plot()
  • SOMWorkflowView.get_notebook_code()
• SOMWorkflowOp
  • SOMWorkflowOp.estimate()
  • SOMWorkflowOp.apply()
  • SOMWorkflowOp.clear_estimate()
  • SOMWorkflowOp.default_view()
  • SOMWorkflowOp.get_notebook_code()
• cytoflowgui.workflow.operations.tasbe
• BleedthroughControl
• TranslationControl
• BeadUnit
• Progress
  • Progress.NO_MODEL
  • Progress.AUTOFLUORESCENCE
  • Progress.BLEEDTHROUGH
  • Progress.BEAD_CALIBRATION
  • Progress.COLOR_TRANSLATION
  • Progress.VALID
• TasbeWorkflowOp
  • TasbeWorkflowOp.estimate()
  • TasbeWorkflowOp.should_clear_estimate()
  • TasbeWorkflowOp.clear_estimate()
  • TasbeWorkflowOp.apply()
  • TasbeWorkflowOp.default_view()
  • TasbeWorkflowOp.get_notebook_code()
• TasbeWorkflowView
  • TasbeWorkflowView.id
  • TasbeWorkflowView.friendly_id
  • TasbeWorkflowView.enum_plots()
  • TasbeWorkflowView.should_plot()
  • TasbeWorkflowView.plot()
  • TasbeWorkflowView.get_notebook_code()
• cytoflowgui.workflow.operations.threshold
• ThresholdSelectionView
  • ThresholdSelectionView.get_notebook_code()
• ThresholdWorkflowOp
  • ThresholdWorkflowOp.default_view()
  • ThresholdWorkflowOp.clear_estimate()
  • ThresholdWorkflowOp.get_notebook_code()
• cytoflowgui.workflow.operations.tsne
• Channel
• tSNEWorkflowOp
  • tSNEWorkflowOp.estimate()
  • tSNEWorkflowOp.apply()
  • tSNEWorkflowOp.clear_estimate()
  • tSNEWorkflowOp.get_notebook_code()
• cytoflowgui.workflow.operations.xform_stat
• mean_95ci()
• geomean_95ci()
• TransformStatisticWorkflowOp
  • TransformStatisticWorkflowOp.fill
  • TransformStatisticWorkflowOp.apply()
  • TransformStatisticWorkflowOp.clear_estimate()
  • TransformStatisticWorkflowOp.get_notebook_code()