<no title>

class cytoflowgui.flow_task.FlowTaskPane(*args, **kwargs)[source]#

Bases: Unimplemented

The center pane for the UI; contains the matplotlib canvas for plotting data views.

id = 'cytoflowgui.flow_task_pane'#

name = 'Cytometry Data Viewer'#

model = <traits.trait_types.Instance object>#: The shared LocalWorkflow model. Set by the task factory

handler = <traits.trait_types.Instance object>#: The shared WorkflowController. Set by the task factory

layout = <traits.trait_types.Instance object>#: The main layout

canvas = <traits.trait_types.Instance object>#: The local matplotlib canvas, an instance of FigureCanvasQTAggLocal

create(parent)[source]#: Create a layout for the tab widget and the main view

activate()[source]#: Activate this task by adding the canvas widget to the task pane layout

class cytoflowgui.flow_task.FlowTask[source]#

Bases: Task

This class coordinates all the views and panels on the main model. Thus, you can think of it as an MVC controller - this is where all the UI handlers for things like the menu and menu bar buttons are.

id#: This tasks’s GUID

name#: This task’s name

model#: The shared LocalWorkflow model

handler#: The shared WorkflowController controller

workflow_pane#: The workflow dock pane

view_pane#: The view configuration dock pane

browser_pane#: The experiment browser dock pane

help_pane#: The help dock pane

plot_params_pane#: The plot parameters dock pane

op_plugins#: The operation plugins

view_plugins#: The view plugins

menu_bar#: The menu bar schema

tool_bars#: The tool bar schema

filename#: The file to save to if the user clicks “save” and has already clicked “open” or “save as”.

initialized()[source]#: Called when the task is about to be activated in a TaskWindow for the first time. Called before activated. If a filename was given on the command line, load it.

activated()[source]#: Called after the task has been activated in a TaskWindow. Initialize the model with an import operation and activate the central pane.

create_central_pane()[source]#: Initialize the toolbar image size and return the central FlowTaskPane

create_dock_panes()[source]#: Create and initialize the dock panes

on_new()[source]#: Create a new workflow when the “New…” button or menu item is clicked

on_open()[source]#: Shows a dialog to open a file.

open_file(path)[source]#: Load a new workflow from a file

on_save()[source]#: Save the workflow to the current filename

on_save_as()[source]#: Save the workflow to a different file

on_export()[source]#: Switch to the ExportTask task

on_notebook()[source]#: Shows a dialog to export the workflow to an Jupyter notebook

on_prefs()[source]#: Event handler for the “preferences” button – currently, do nothing

on_docs()[source]#: Event handler for the “Online documentation….” menu item. Opens a webbrowser to the online manual at readthedocs.io

on_problem()[source]#: Event handler for the bug report button & menu item. Saves the in-memory log to disk, then opens a webbrowser to the new issue page on GitHub.

on_toggle_workflow()[source]#: Toggle the visibility of the workflow pane

on_toggle_view()[source]#: Toggle the visibility of the view properties pane

on_toggle_plot_params()[source]#: Toggle the visibility of the plot parameters pane

on_toggle_browser()[source]#: Toggle the visiblity of the experiment browser pane

on_toggle_help()[source]#: Toggle the visiblity of the help pane

on_about()[source]#: Event handler for “About…” menu item. Shows an about dialog box.

save_notebook(workflow, path)[source]#: Saves the workflow to a Jupyter notebook.

show_toolbar_names(_)[source]#

class cytoflowgui.flow_task.FlowTaskPlugin[source]#

Bases: Plugin

An Envisage plugin wrapping FlowTask

PREFERENCES = 'envisage.preferences'#

PREFERENCES_PANES = 'envisage.ui.tasks.preferences_panes'#

TASKS = 'envisage.ui.tasks.tasks'#