cytoflowgui package

cytoflowgui

The cytoflowgui package contains the Qt GUI for cytoflow.

Subpackages

• cytoflowgui.editors package
  • cytoflowgui.editors
  • Submodules
    • cytoflowgui.editors.color_text_editor
    • ColorTextEditor
      • ColorTextEditor.klass
      • ColorTextEditor.foreground_color
      • ColorTextEditor.background_color
    • cytoflowgui.editors.ext_enum_editor
    • ExtendableEnumEditor
      • ExtendableEnumEditor.extra_items
    • cytoflowgui.editors.instance_handler_editor
    • InstanceHandlerEditor
      • InstanceHandlerEditor.custom_editor_class
      • InstanceHandlerEditor.handler_factory
      • InstanceHandlerEditor.custom_editor()
    • cytoflowgui.editors.range_slider
    • RangeSlider
      • RangeSlider.low()
      • RangeSlider.setLow()
      • RangeSlider.high()
      • RangeSlider.setHigh()
      • RangeSlider.sliderOrderForPaint()
      • RangeSlider.sliderOrderForMove()
      • RangeSlider.paintEvent()
      • RangeSlider.mousePressEvent()
      • RangeSlider.mouseMoveEvent()
      • RangeSlider.mouseReleaseEvent()
    • cytoflowgui.editors.subset_list_editor
    • SubsetListEditor
      • SubsetListEditor.conditions
      • SubsetListEditor.metadata
      • SubsetListEditor.when
      • SubsetListEditor.style
      • SubsetListEditor.mutable
    • cytoflowgui.editors.tab_list_editor
    • TabListEditor
    • cytoflowgui.editors.toggle_button
    • ToggleButtonEditor
      • ToggleButtonEditor.klass
      • ToggleButtonEditor.value
      • ToggleButtonEditor.label
      • ToggleButtonEditor.label_value
    • cytoflowgui.editors.value_bounds_editor
    • ValuesBoundsEditor
    • cytoflowgui.editors.vertical_list_editor
    • VerticalListEditor
    • cytoflowgui.editors.vertical_notebook
    • VerticalNotebookPage
      • VerticalNotebookPage.name
      • VerticalNotebookPage.description
      • VerticalNotebookPage.ui
      • VerticalNotebookPage.data
      • VerticalNotebookPage.name_object
      • VerticalNotebookPage.name_object_trait
      • VerticalNotebookPage.description_object
      • VerticalNotebookPage.description_object_trait
      • VerticalNotebookPage.icon
      • VerticalNotebookPage.icon_object
      • VerticalNotebookPage.icon_object_trait
      • VerticalNotebookPage.deletable
      • VerticalNotebookPage.deletable_object
      • VerticalNotebookPage.deletable_object_trait
      • VerticalNotebookPage.parent
      • VerticalNotebookPage.is_open
      • VerticalNotebookPage.min_size
      • VerticalNotebookPage.dispose()
      • VerticalNotebookPage.register_name_listener()
      • VerticalNotebookPage.register_description_listener()
      • VerticalNotebookPage.register_icon_listener()
      • VerticalNotebookPage.register_deletable_listener()
    • VerticalNotebook
      • VerticalNotebook.multiple_open
      • VerticalNotebook.delete
      • VerticalNotebook.pages
      • VerticalNotebook.editor
      • VerticalNotebook.create_control()
      • VerticalNotebook.create_page()
      • VerticalNotebook.open()
      • VerticalNotebook.close()
    • cytoflowgui.editors.vertical_notebook_editor
    • VerticalNotebookEditor
      • VerticalNotebookEditor.klass
      • VerticalNotebookEditor.multiple_open
      • VerticalNotebookEditor.delete
      • VerticalNotebookEditor.page_name
      • VerticalNotebookEditor.page_description
      • VerticalNotebookEditor.page_icon
      • VerticalNotebookEditor.page_deletable
      • VerticalNotebookEditor.view
      • VerticalNotebookEditor.handler_factory
      • VerticalNotebookEditor.selected
• cytoflowgui.op_plugins package
  • cytoflowgui.op_plugins
  • Submodules
    • cytoflowgui.op_plugins.autofluorescence
    • AutofluorescenceHandler
    • AutofluorescenceViewHandler
    • AutofluorescencePlugin
      • AutofluorescencePlugin.operation_id
      • AutofluorescencePlugin.view_id
      • AutofluorescencePlugin.short_name
      • AutofluorescencePlugin.menu_group
      • AutofluorescencePlugin.get_operation()
      • AutofluorescencePlugin.get_handler()
      • AutofluorescencePlugin.get_icon()
    • cytoflowgui.op_plugins.bead_calibration
    • UnitHandler
    • BeadCalibrationHandler
      • BeadCalibrationHandler.add_channel
      • BeadCalibrationHandler.remove_channel
      • BeadCalibrationHandler.channels
      • BeadCalibrationHandler.beads_name_choices
      • BeadCalibrationHandler.beads_units
    • BeadCalibrationViewHandler
    • BeadCalibrationPlugin
      • BeadCalibrationPlugin.operation_id
      • BeadCalibrationPlugin.view_id
      • BeadCalibrationPlugin.short_name
      • BeadCalibrationPlugin.menu_group
      • BeadCalibrationPlugin.get_operation()
      • BeadCalibrationPlugin.get_handler()
      • BeadCalibrationPlugin.get_icon()
    • cytoflowgui.op_plugins.binning
    • BinningHandler
    • BinningViewHandler
    • BinningPlugin
      • BinningPlugin.operation_id
      • BinningPlugin.view_id
      • BinningPlugin.short_name
      • BinningPlugin.menu_group
      • BinningPlugin.get_operation()
      • BinningPlugin.get_handler()
      • BinningPlugin.get_icon()
    • cytoflowgui.op_plugins.bleedthrough_linear
    • ChannelHandler
    • BleedthroughLinearHandler
      • BleedthroughLinearHandler.add_channel
      • BleedthroughLinearHandler.remove_channel
      • BleedthroughLinearHandler.channels
    • BleedthroughLinearViewHandler
    • BleedthroughLinearPlugin
      • BleedthroughLinearPlugin.operation_id
      • BleedthroughLinearPlugin.view_id
      • BleedthroughLinearPlugin.short_name
      • BleedthroughLinearPlugin.menu_group
      • BleedthroughLinearPlugin.get_operation()
      • BleedthroughLinearPlugin.get_handler()
      • BleedthroughLinearPlugin.get_icon()
    • cytoflowgui.op_plugins.category
    • CategoryOpSubsetHandler
      • CategoryOpSubsetHandler.previous_conditions
    • CategoryHandler
      • CategoryHandler.add_subset
      • CategoryHandler.remove_subset
    • CategoryPlugin
      • CategoryPlugin.operation_id
      • CategoryPlugin.view_id
      • CategoryPlugin.short_name
      • CategoryPlugin.menu_group
      • CategoryPlugin.get_operation()
      • CategoryPlugin.get_handler()
      • CategoryPlugin.get_icon()
    • cytoflowgui.op_plugins.channel_stat
    • ChannelStatisticHandler
    • ChannelStatisticPlugin
      • ChannelStatisticPlugin.operation_id
      • ChannelStatisticPlugin.view_id
      • ChannelStatisticPlugin.short_name
      • ChannelStatisticPlugin.menu_group
      • ChannelStatisticPlugin.get_operation()
      • ChannelStatisticPlugin.get_handler()
      • ChannelStatisticPlugin.get_icon()
    • cytoflowgui.op_plugins.color_translation
    • ControlHandler
    • ColorTranslationHandler
      • ColorTranslationHandler.add_control
      • ColorTranslationHandler.remove_control
      • ColorTranslationHandler.channels
    • ColorTranslationViewHandler
    • ColorTranslationPlugin
      • ColorTranslationPlugin.operation_id
      • ColorTranslationPlugin.view_id
      • ColorTranslationPlugin.short_name
      • ColorTranslationPlugin.menu_group
      • ColorTranslationPlugin.get_operation()
      • ColorTranslationPlugin.get_handler()
      • ColorTranslationPlugin.get_icon()
    • cytoflowgui.op_plugins.density
    • DensityGateHandler
      • DensityGateHandler.show_advanced
    • DensityGateViewHandler
    • DensityGatePlugin
      • DensityGatePlugin.operation_id
      • DensityGatePlugin.view_id
      • DensityGatePlugin.short_name
      • DensityGatePlugin.menu_group
      • DensityGatePlugin.get_operation()
      • DensityGatePlugin.get_handler()
      • DensityGatePlugin.get_icon()
    • cytoflowgui.op_plugins.flowclean
    • ChannelHandler
    • FlowCleanHandler
      • FlowCleanHandler.add_channel
      • FlowCleanHandler.remove_channel
      • FlowCleanHandler.channels
      • FlowCleanHandler.show_advanced_options
    • FlowCleanViewHandler
    • FlowCleanPlugin
      • FlowCleanPlugin.operation_id
      • FlowCleanPlugin.view_id
      • FlowCleanPlugin.short_name
      • FlowCleanPlugin.menu_group
      • FlowCleanPlugin.get_operation()
      • FlowCleanPlugin.get_handler()
      • FlowCleanPlugin.get_icon()
    • cytoflowgui.op_plugins.flowpeaks
    • FlowPeaksHandler
    • FlowPeaksViewHandler
    • FlowPeaksPlugin
      • FlowPeaksPlugin.operation_id
      • FlowPeaksPlugin.view_id
      • FlowPeaksPlugin.short_name
      • FlowPeaksPlugin.menu_group
      • FlowPeaksPlugin.get_operation()
      • FlowPeaksPlugin.get_handler()
      • FlowPeaksPlugin.get_icon()
    • cytoflowgui.op_plugins.gaussian_1d
    • GaussianMixture1DHandler
    • GaussianMixture1DViewHandler
    • GaussianMixture1DPlugin
      • GaussianMixture1DPlugin.operation_id
      • GaussianMixture1DPlugin.view_id
      • GaussianMixture1DPlugin.short_name
      • GaussianMixture1DPlugin.menu_group
      • GaussianMixture1DPlugin.get_operation()
      • GaussianMixture1DPlugin.get_handler()
      • GaussianMixture1DPlugin.get_icon()
    • cytoflowgui.op_plugins.gaussian_2d
    • GaussianMixture2DHandler
    • GaussianMixture2DViewHandler
    • GaussianMixture2DPlugin
      • GaussianMixture2DPlugin.operation_id
      • GaussianMixture2DPlugin.view_id
      • GaussianMixture2DPlugin.short_name
      • GaussianMixture2DPlugin.menu_group
      • GaussianMixture2DPlugin.get_operation()
      • GaussianMixture2DPlugin.get_handler()
      • GaussianMixture2DPlugin.get_icon()
    • cytoflowgui.op_plugins.hierarchy
    • GateHandler
      • GateHandler.values
    • HierarchyHandler
      • HierarchyHandler.add_gate
      • HierarchyHandler.remove_gate
      • HierarchyHandler.conditions
    • HierarchyPlugin
      • HierarchyPlugin.operation_id
      • HierarchyPlugin.view_id
      • HierarchyPlugin.short_name
      • HierarchyPlugin.menu_group
      • HierarchyPlugin.get_operation()
      • HierarchyPlugin.get_handler()
      • HierarchyPlugin.get_icon()
    • cytoflowgui.op_plugins.i_op_plugin
    • IOperationPlugin
      • IOperationPlugin.id
      • IOperationPlugin.operation_id
      • IOperationPlugin.name
      • IOperationPlugin.short_name
      • IOperationPlugin.get_operation()
      • IOperationPlugin.get_handler()
      • IOperationPlugin.get_icon()
      • IOperationPlugin.get_help()
    • OpPluginManager
    • cytoflowgui.op_plugins.import_op
    • ChannelHandler
    • ImportHandler
      • ImportHandler.setup_event
      • ImportHandler.reset_channels_event
      • ImportHandler.samples
      • ImportHandler.dialog_model
    • ImportPlugin
      • ImportPlugin.operation_id
      • ImportPlugin.view_id
      • ImportPlugin.short_name
      • ImportPlugin.menu_group
      • ImportPlugin.get_operation()
      • ImportPlugin.get_handler()
      • ImportPlugin.get_icon()
    • cytoflowgui.op_plugins.kmeans
    • KMeansHandler
    • KMeansViewHandler
    • KMeansPlugin
      • KMeansPlugin.operation_id
      • KMeansPlugin.view_id
      • KMeansPlugin.short_name
      • KMeansPlugin.menu_group
      • KMeansPlugin.get_operation()
      • KMeansPlugin.get_handler()
      • KMeansPlugin.get_icon()
    • cytoflowgui.op_plugins.merge_stat
    • MergeStatisticsHandler
    • MergeStatisticsPlugin
      • MergeStatisticsPlugin.operation_id
      • MergeStatisticsPlugin.view_id
      • MergeStatisticsPlugin.short_name
      • MergeStatisticsPlugin.menu_group
      • MergeStatisticsPlugin.get_operation()
      • MergeStatisticsPlugin.get_handler()
      • MergeStatisticsPlugin.get_icon()
    • cytoflowgui.op_plugins.mst
    • MSTOpHandler
    • MSTPlugin
      • MSTPlugin.operation_id
      • MSTPlugin.view_id
      • MSTPlugin.short_name
      • MSTPlugin.menu_group
      • MSTPlugin.get_operation()
      • MSTPlugin.get_handler()
      • MSTPlugin.get_icon()
    • cytoflowgui.op_plugins.multi_channel_stat
    • FunctionHandler
    • MultiChannelStatisticHandler
      • MultiChannelStatisticHandler.add_function
      • MultiChannelStatisticHandler.remove_function
      • MultiChannelStatisticHandler.channels
    • MultiChannelStatisticPlugin
      • MultiChannelStatisticPlugin.operation_id
      • MultiChannelStatisticPlugin.view_id
      • MultiChannelStatisticPlugin.short_name
      • MultiChannelStatisticPlugin.menu_group
      • MultiChannelStatisticPlugin.get_operation()
      • MultiChannelStatisticPlugin.get_handler()
      • MultiChannelStatisticPlugin.get_icon()
    • cytoflowgui.op_plugins.op_plugin_base
    • OpHandler
      • OpHandler.context
    • PluginHelpMixin
      • PluginHelpMixin.get_help()
    • cytoflowgui.op_plugins.pca
    • ChannelHandler
    • PCAHandler
      • PCAHandler.add_channel
      • PCAHandler.remove_channel
      • PCAHandler.channels
    • PCAPlugin
      • PCAPlugin.operation_id
      • PCAPlugin.view_id
      • PCAPlugin.short_name
      • PCAPlugin.menu_group
      • PCAPlugin.get_operation()
      • PCAPlugin.get_handler()
      • PCAPlugin.get_icon()
    • cytoflowgui.op_plugins.polygon
    • PolygonViewParamsHandler
    • PolygonHandler
    • PolygonViewHandler
    • PolygonPlugin
      • PolygonPlugin.operation_id
      • PolygonPlugin.view_id
      • PolygonPlugin.short_name
      • PolygonPlugin.menu_group
      • PolygonPlugin.get_operation()
      • PolygonPlugin.get_handler()
      • PolygonPlugin.get_icon()
    • cytoflowgui.op_plugins.quad
    • QuadHandler
    • QuadViewHandler
    • QuadPlugin
      • QuadPlugin.operation_id
      • QuadPlugin.view_id
      • QuadPlugin.short_name
      • QuadPlugin.menu_group
      • QuadPlugin.get_operation()
      • QuadPlugin.get_handler()
      • QuadPlugin.get_icon()
    • cytoflowgui.op_plugins.range
    • RangeHandler
    • RangeViewHandler
    • RangePlugin
      • RangePlugin.operation_id
      • RangePlugin.view_id
      • RangePlugin.short_name
      • RangePlugin.menu_group
      • RangePlugin.get_operation()
      • RangePlugin.get_handler()
      • RangePlugin.get_icon()
    • cytoflowgui.op_plugins.range2d
    • Range2DViewParamsHandler
    • Range2DHandler
    • Range2DViewHandler
    • Range2DPlugin
      • Range2DPlugin.operation_id
      • Range2DPlugin.view_id
      • Range2DPlugin.short_name
      • Range2DPlugin.menu_group
      • Range2DPlugin.get_operation()
      • Range2DPlugin.get_handler()
      • Range2DPlugin.get_icon()
    • cytoflowgui.op_plugins.ratio
    • RatioHandler
    • RatioPlugin
      • RatioPlugin.operation_id
      • RatioPlugin.view_id
      • RatioPlugin.short_name
      • RatioPlugin.menu_group
      • RatioPlugin.get_operation()
      • RatioPlugin.get_handler()
      • RatioPlugin.get_icon()
    • cytoflowgui.op_plugins.register
    • ChannelHandler
    • RegistrationHandler
      • RegistrationHandler.add_channel
      • RegistrationHandler.remove_channel
      • RegistrationHandler.channels
    • RegistrationDiagnosticViewHandler
    • RegistrationPlugin
      • RegistrationPlugin.operation_id
      • RegistrationPlugin.view_id
      • RegistrationPlugin.short_name
      • RegistrationPlugin.menu_group
      • RegistrationPlugin.get_operation()
      • RegistrationPlugin.get_handler()
      • RegistrationPlugin.get_icon()
    • cytoflowgui.op_plugins.som
    • ChannelHandler
    • SOMHandler
      • SOMHandler.add_channel
      • SOMHandler.remove_channel
      • SOMHandler.show_advanced
      • SOMHandler.channels
    • SOMViewHandler
    • SOMPlugin
      • SOMPlugin.operation_id
      • SOMPlugin.view_id
      • SOMPlugin.short_name
      • SOMPlugin.menu_group
      • SOMPlugin.get_operation()
      • SOMPlugin.get_handler()
      • SOMPlugin.get_icon()
    • cytoflowgui.op_plugins.tasbe
    • BleedthroughControlHandler
    • TranslationControlHandler
    • UnitHandler
    • TasbeHandler
      • TasbeHandler.beads_name_choices
      • TasbeHandler.beads_units
    • TasbeViewHandler
    • TasbePlugin
      • TasbePlugin.operation_id
      • TasbePlugin.view_id
      • TasbePlugin.short_name
      • TasbePlugin.menu_group
      • TasbePlugin.get_operation()
      • TasbePlugin.get_handler()
      • TasbePlugin.get_icon()
    • cytoflowgui.op_plugins.threshold
    • ThresholdHandler
    • ThresholdViewHandler
    • ThresholdPlugin
      • ThresholdPlugin.operation_id
      • ThresholdPlugin.view_id
      • ThresholdPlugin.short_name
      • ThresholdPlugin.menu_group
      • ThresholdPlugin.get_operation()
      • ThresholdPlugin.get_handler()
      • ThresholdPlugin.get_icon()
    • cytoflowgui.op_plugins.tsne
    • ChannelHandler
    • tSNEHandler
      • tSNEHandler.add_channel
      • tSNEHandler.remove_channel
      • tSNEHandler.channels
    • tSNEPlugin
      • tSNEPlugin.operation_id
      • tSNEPlugin.view_id
      • tSNEPlugin.short_name
      • tSNEPlugin.menu_group
      • tSNEPlugin.get_operation()
      • tSNEPlugin.get_handler()
      • tSNEPlugin.get_icon()
    • cytoflowgui.op_plugins.xform_stat
    • TransformStatisticHandler
      • TransformStatisticHandler.indices
      • TransformStatisticHandler.levels
      • TransformStatisticHandler.features
    • TransformStatisticPlugin
      • TransformStatisticPlugin.operation_id
      • TransformStatisticPlugin.view_id
      • TransformStatisticPlugin.short_name
      • TransformStatisticPlugin.menu_group
      • TransformStatisticPlugin.get_operation()
      • TransformStatisticPlugin.get_handler()
      • TransformStatisticPlugin.get_icon()
• cytoflowgui.utility package
  • cytoflowgui.utility
  • Submodules
    • cytoflowgui.utility.event_tracer
    • SentinelRecord
    • ChangeMessageRecord
      • ChangeMessageRecord.time
      • ChangeMessageRecord.indent
      • ChangeMessageRecord.name
      • ChangeMessageRecord.old
      • ChangeMessageRecord.new
      • ChangeMessageRecord.class_name
    • CallingMessageRecord
      • CallingMessageRecord.time
      • CallingMessageRecord.indent
      • CallingMessageRecord.handler
      • CallingMessageRecord.source
    • ExitMessageRecord
      • ExitMessageRecord.time
      • ExitMessageRecord.indent
      • ExitMessageRecord.handler
      • ExitMessageRecord.exception
    • RecordContainer
      • RecordContainer.record()
      • RecordContainer.save_to_file()
    • MultiThreadRecordContainer
      • MultiThreadRecordContainer.get_change_event_collector()
      • MultiThreadRecordContainer.save_to_directory()
    • ChangeEventRecorder
      • ChangeEventRecorder.pre_tracer()
      • ChangeEventRecorder.post_tracer()
    • MultiThreadChangeEventRecorder
      • MultiThreadChangeEventRecorder.close()
      • MultiThreadChangeEventRecorder.pre_tracer()
      • MultiThreadChangeEventRecorder.post_tracer()
    • record_events()
    • cytoflowgui.utility.logging
    • CallbackHandler
      • CallbackHandler.emit()
    • log_exception()
• cytoflowgui.view_plugins package
  • cytoflowgui.view_plugins
  • Submodules
    • cytoflowgui.view_plugins.bar_chart
    • BarChartParamsHandler
    • BarChartHandler
      • BarChartHandler.features
      • BarChartHandler.indices
      • BarChartHandler.levels
    • BarChartPlugin
      • BarChartPlugin.view_id
      • BarChartPlugin.short_name
      • BarChartPlugin.get_view()
      • BarChartPlugin.get_handler()
      • BarChartPlugin.get_icon()
    • cytoflowgui.view_plugins.density
    • DensityParamsHandler
    • DensityHandler
    • DensityPlugin
      • DensityPlugin.view_id
      • DensityPlugin.short_name
      • DensityPlugin.get_view()
      • DensityPlugin.get_handler()
      • DensityPlugin.get_icon()
    • cytoflowgui.view_plugins.export_fcs
    • ExportFCSHandler
      • ExportFCSHandler.export
    • ExportFCSPlugin
      • ExportFCSPlugin.view_id
      • ExportFCSPlugin.short_name
      • ExportFCSPlugin.get_view()
      • ExportFCSPlugin.get_handler()
      • ExportFCSPlugin.get_icon()
    • cytoflowgui.view_plugins.histogram
    • HistogramParamsHandler
    • HistogramHandler
    • HistogramPlugin
      • HistogramPlugin.view_id
      • HistogramPlugin.short_name
      • HistogramPlugin.get_view()
      • HistogramPlugin.get_handler()
      • HistogramPlugin.get_icon()
    • cytoflowgui.view_plugins.histogram_2d
    • Histogram2DParamsHandler
    • Histogram2DHandler
    • Histogram2DPlugin
      • Histogram2DPlugin.view_id
      • Histogram2DPlugin.short_name
      • Histogram2DPlugin.get_view()
      • Histogram2DPlugin.get_handler()
      • Histogram2DPlugin.get_icon()
    • cytoflowgui.view_plugins.i_view_plugin
    • IViewPlugin
      • IViewPlugin.id
      • IViewPlugin.view_id
      • IViewPlugin.name
      • IViewPlugin.short_name
      • IViewPlugin.get_view()
      • IViewPlugin.get_handler()
      • IViewPlugin.get_icon()
      • IViewPlugin.get_help()
      • IViewPlugin.get_plugin()
    • ViewPluginManager
    • cytoflowgui.view_plugins.kde_1d
    • Kde1DParamsHandler
    • Kde1DHandler
    • Kde1DPlugin
      • Kde1DPlugin.view_id
      • Kde1DPlugin.short_name
      • Kde1DPlugin.get_view()
      • Kde1DPlugin.get_handler()
      • Kde1DPlugin.get_icon()
    • cytoflowgui.view_plugins.kde_2d
    • Kde2DParamsHandler
    • Kde2DHandler
    • Kde2DPlugin
      • Kde2DPlugin.view_id
      • Kde2DPlugin.short_name
      • Kde2DPlugin.get_view()
      • Kde2DPlugin.get_handler()
      • Kde2DPlugin.get_icon()
    • cytoflowgui.view_plugins.long_table
    • LongTableHandler
      • LongTableHandler.levels
      • LongTableHandler.export
    • LongTablePlugin
      • LongTablePlugin.view_id
      • LongTablePlugin.short_name
      • LongTablePlugin.get_view()
      • LongTablePlugin.get_handler()
      • LongTablePlugin.get_icon()
    • cytoflowgui.view_plugins.matrix
    • MatrixParamsHandler
    • MatrixHandler
      • MatrixHandler.features
      • MatrixHandler.indices
      • MatrixHandler.levels
    • MatrixPlugin
      • MatrixPlugin.view_id
      • MatrixPlugin.short_name
      • MatrixPlugin.get_view()
      • MatrixPlugin.get_handler()
      • MatrixPlugin.get_icon()
    • cytoflowgui.view_plugins.mst
    • MSTParamsHandler
    • MSTHandler
      • MSTHandler.features
      • MSTHandler.locations_features
      • MSTHandler.locations_levels
      • MSTHandler.indices
      • MSTHandler.levels
    • MSTPlugin
      • MSTPlugin.view_id
      • MSTPlugin.short_name
      • MSTPlugin.get_view()
      • MSTPlugin.get_handler()
      • MSTPlugin.get_icon()
    • cytoflowgui.view_plugins.parallel_coords
    • ParallelCoordinatesParamsHandler
    • ChannelHandler
    • ParallelCoordinatesHandler
      • ParallelCoordinatesHandler.add_channel
      • ParallelCoordinatesHandler.remove_channel
      • ParallelCoordinatesHandler.channels
    • ParallelCoordinatesPlugin
      • ParallelCoordinatesPlugin.view_id
      • ParallelCoordinatesPlugin.short_name
      • ParallelCoordinatesPlugin.get_view()
      • ParallelCoordinatesPlugin.get_handler()
      • ParallelCoordinatesPlugin.get_icon()
    • cytoflowgui.view_plugins.radviz
    • RadvizParamsHandler
    • ChannelHandler
    • RadvizHandler
      • RadvizHandler.add_channel
      • RadvizHandler.remove_channel
      • RadvizHandler.channels
    • RadvizPlugin
      • RadvizPlugin.view_id
      • RadvizPlugin.short_name
      • RadvizPlugin.get_view()
      • RadvizPlugin.get_handler()
      • RadvizPlugin.get_icon()
    • cytoflowgui.view_plugins.scatterplot
    • ScatterplotParamsHandler
    • ScatterplotHandler
    • ScatterplotPlugin
      • ScatterplotPlugin.view_id
      • ScatterplotPlugin.short_name
      • ScatterplotPlugin.get_view()
      • ScatterplotPlugin.get_handler()
      • ScatterplotPlugin.get_icon()
    • cytoflowgui.view_plugins.stats_1d
    • Stats1DParamsHandler
    • Stats1DHandler
      • Stats1DHandler.indices
      • Stats1DHandler.numeric_indices
      • Stats1DHandler.levels
      • Stats1DHandler.features
    • Stats1DPlugin
      • Stats1DPlugin.view_id
      • Stats1DPlugin.short_name
      • Stats1DPlugin.get_view()
      • Stats1DPlugin.get_handler()
      • Stats1DPlugin.get_icon()
    • cytoflowgui.view_plugins.stats_2d
    • Stats2DParamsHandler
    • Stats2DHandler
      • Stats2DHandler.indices
      • Stats2DHandler.numeric_indices
      • Stats2DHandler.levels
      • Stats2DHandler.features
    • Stats2DPlugin
      • Stats2DPlugin.view_id
      • Stats2DPlugin.short_name
      • Stats2DPlugin.get_view()
      • Stats2DPlugin.get_handler()
      • Stats2DPlugin.get_icon()
    • cytoflowgui.view_plugins.table
    • TableHandler
      • TableHandler.indices
      • TableHandler.levels
      • TableHandler.features
      • TableHandler.export
    • TablePlugin
      • TablePlugin.view_id
      • TablePlugin.short_name
      • TablePlugin.get_view()
      • TablePlugin.get_handler()
      • TablePlugin.get_icon()
    • cytoflowgui.view_plugins.view_plugin_base
    • PluginHelpMixin
      • PluginHelpMixin.get_help()
    • ViewHandler
      • ViewHandler.context
    • cytoflowgui.view_plugins.violin
    • ViolinParamsHandler
    • ViolinHandler
    • ViolinPlotPlugin
      • ViolinPlotPlugin.view_id
      • ViolinPlotPlugin.short_name
      • ViolinPlotPlugin.get_view()
      • ViolinPlotPlugin.get_handler()
      • ViolinPlotPlugin.get_icon()
• cytoflowgui.workflow package
  • cytoflowgui.workflow
  • Changed
    • Changed.APPLY
    • Changed.ESTIMATE
    • Changed.VIEW
    • Changed.ESTIMATE_RESULT
    • Changed.OP_STATUS
    • Changed.RESULT
    • Changed.PREV_RESULT
  • Subpackages
    • cytoflowgui.workflow.operations package
      • cytoflowgui.workflow.operations
      • Submodules
    • cytoflowgui.workflow.views package
      • cytoflowgui.workflow.views
      • Submodules
  • Submodules
    • cytoflowgui.workflow.serialization
    • load_yaml()
    • save_yaml()
    • traits_eq()
    • traits_hash()
    • traits_repr()
    • cytoflow_class_repr()
    • traits_str()
    • cytoflowgui.workflow.subset
    • ISubset
    • BoolSubset
    • CategorySubset
    • RangeSubset
    • cytoflowgui.workflow.workflow
    • Msg
      • Msg.NEW_WORKFLOW
      • Msg.ADD_ITEMS
      • Msg.REMOVE_ITEMS
      • Msg.SELECT
      • Msg.UPDATE_OP
      • Msg.UPDATE_VIEW
      • Msg.CHANGE_CURRENT_VIEW
      • Msg.UPDATE_WI
      • Msg.ESTIMATE
      • Msg.APPLY_CALLED
      • Msg.PLOT_CALLED
      • Msg.EVAL
      • Msg.EXEC
      • Msg.RUN_ALL
      • Msg.SHUTDOWN
    • UniquePriorityQueue
    • filter_unpicklable()
    • LocalWorkflow
      • LocalWorkflow.workflow
      • LocalWorkflow.selected
      • LocalWorkflow.modified
      • LocalWorkflow.message_q
      • LocalWorkflow.recv_thread
      • LocalWorkflow.send_thread
      • LocalWorkflow.recv_main()
      • LocalWorkflow.send_main()
      • LocalWorkflow.run_all()
      • LocalWorkflow.remote_eval()
      • LocalWorkflow.remote_exec()
      • LocalWorkflow.wi_sync()
      • LocalWorkflow.wi_waitfor()
      • LocalWorkflow.shutdown_remote_process()
    • RemoteWorkflow
      • RemoteWorkflow.workflow
      • RemoteWorkflow.selected
      • RemoteWorkflow.last_view_plotted
      • RemoteWorkflow.send_thread
      • RemoteWorkflow.recv_thread
      • RemoteWorkflow.message_q
      • RemoteWorkflow.matplotlib_events
      • RemoteWorkflow.plot_lock
      • RemoteWorkflow.run()
      • RemoteWorkflow.recv_main()
      • RemoteWorkflow.send_main()
      • RemoteWorkflow.shutdown()
    • cytoflowgui.workflow.workflow_item
    • WorkflowItem
      • WorkflowItem.friendly_id
      • WorkflowItem.name
      • WorkflowItem.operation
      • WorkflowItem.views
      • WorkflowItem.current_view
      • WorkflowItem.result
      • WorkflowItem.channels
      • WorkflowItem.conditions
      • WorkflowItem.metadata
      • WorkflowItem.statistics
      • WorkflowItem.default_view
      • WorkflowItem.previous_wi
      • WorkflowItem.next_wi
      • WorkflowItem.workflow
      • WorkflowItem.status
      • WorkflowItem.op_error
      • WorkflowItem.op_error_trait
      • WorkflowItem.op_warning
      • WorkflowItem.op_warning_trait
      • WorkflowItem.estimate_error
      • WorkflowItem.estimate_warning
      • WorkflowItem.view_error
      • WorkflowItem.view_error_trait
      • WorkflowItem.view_warning
      • WorkflowItem.view_warning_trait
      • WorkflowItem.plot_names
      • WorkflowItem.plot_names_label
      • WorkflowItem.matplotlib_events
      • WorkflowItem.plot_lock
      • WorkflowItem.lock
      • WorkflowItem.edit_traits()
      • WorkflowItem.trait_view()
      • WorkflowItem.estimate()
      • WorkflowItem.apply()
      • WorkflowItem.plot()

Submodules

• cytoflowgui.cytoflow_application
• gui_handler_callback()
• CytoflowApplication
  • CytoflowApplication.id
  • CytoflowApplication.name
  • CytoflowApplication.default_layout
  • CytoflowApplication.always_use_default_layout
  • CytoflowApplication.debug
  • CytoflowApplication.filename
  • CytoflowApplication.application_error
  • CytoflowApplication.application_warning
  • CytoflowApplication.shown_warnings
  • CytoflowApplication.application_log
  • CytoflowApplication.model
  • CytoflowApplication.controller
  • CytoflowApplication.remote_process
  • CytoflowApplication.remote_workflow_connection
  • CytoflowApplication.remote_canvas_connection
  • CytoflowApplication.canvas
  • CytoflowApplication.run()
  • CytoflowApplication.show_error()
  • CytoflowApplication.show_warning()
  • CytoflowApplication.stop()
  • CytoflowApplication.preferences_helper
• cytoflowgui.experiment_pane
• ExperimentBrowserDockPane
  • ExperimentBrowserDockPane.id
  • ExperimentBrowserDockPane.name
  • ExperimentBrowserDockPane.handler
  • ExperimentBrowserDockPane.closable
  • ExperimentBrowserDockPane.dock_area
  • ExperimentBrowserDockPane.floatable
  • ExperimentBrowserDockPane.movable
  • ExperimentBrowserDockPane.visible
  • ExperimentBrowserDockPane.create_contents()
• cytoflowgui.experiment_pane_model
• WorkflowItemNode
  • WorkflowItemNode.wi
  • WorkflowItemNode.label
  • WorkflowItemNode.tno_get_label()
  • WorkflowItemNode.tno_allows_children()
  • WorkflowItemNode.tno_has_children()
  • WorkflowItemNode.tno_get_menu()
  • WorkflowItemNode.tno_get_children()
• ChannelsNode
  • ChannelsNode.wi
  • ChannelsNode.label
  • ChannelsNode.tno_get_label()
  • ChannelsNode.tno_allows_children()
  • ChannelsNode.tno_has_children()
  • ChannelsNode.tno_get_menu()
  • ChannelsNode.tno_get_icon()
  • ChannelsNode.tno_get_children()
• ChannelNode
  • ChannelNode.wi
  • ChannelNode.channel
  • ChannelNode.tno_get_label()
  • ChannelNode.tno_allows_children()
  • ChannelNode.tno_has_children()
  • ChannelNode.tno_get_menu()
  • ChannelNode.tno_get_icon()
  • ChannelNode.tno_get_children()
• ConditionsNode
  • ConditionsNode.wi
  • ConditionsNode.label
  • ConditionsNode.tno_get_label()
  • ConditionsNode.tno_allows_children()
  • ConditionsNode.tno_has_children()
  • ConditionsNode.tno_get_menu()
  • ConditionsNode.tno_get_icon()
  • ConditionsNode.tno_get_children()
• ConditionNode
  • ConditionNode.wi
  • ConditionNode.condition
  • ConditionNode.tno_get_label()
  • ConditionNode.tno_allows_children()
  • ConditionNode.tno_has_children()
  • ConditionNode.tno_get_menu()
  • ConditionNode.tno_get_icon()
  • ConditionNode.tno_get_children()
• StatisticsNode
  • StatisticsNode.wi
  • StatisticsNode.label
  • StatisticsNode.tno_get_label()
  • StatisticsNode.tno_allows_children()
  • StatisticsNode.tno_has_children()
  • StatisticsNode.tno_get_menu()
  • StatisticsNode.tno_get_icon()
  • StatisticsNode.tno_get_children()
• StatisticNode
  • StatisticNode.wi
  • StatisticNode.statistic
  • StatisticNode.tno_get_label()
  • StatisticNode.tno_allows_children()
  • StatisticNode.tno_has_children()
  • StatisticNode.tno_get_menu()
  • StatisticNode.tno_get_icon()
  • StatisticNode.tno_get_children()
• StringNode
  • StringNode.name
  • StringNode.label
  • StringNode.value
  • StringNode.tno_allows_children()
  • StringNode.tno_has_children()
  • StringNode.tno_get_menu()
  • StringNode.tno_get_icon()
  • StringNode.tno_get_label()
  • StringNode.format_value()
• cytoflowgui.export_task
• ExportPane
  • ExportPane.id
  • ExportPane.name
  • ExportPane.task
  • ExportPane.closable
  • ExportPane.dock_area
  • ExportPane.floatable
  • ExportPane.movable
  • ExportPane.visible
  • ExportPane.default_traits_view()
  • ExportPane.create_contents()
• ExportTaskPane
  • ExportTaskPane.id
  • ExportTaskPane.name
  • ExportTaskPane.model
  • ExportTaskPane.handler
  • ExportTaskPane.layout
  • ExportTaskPane.canvas
  • ExportTaskPane.create()
  • ExportTaskPane.activate()
• ExportTask
  • ExportTask.menu_bar
  • ExportTask.model
  • ExportTask.handler
  • ExportTask.params_pane
  • ExportTask.export_pane
  • ExportTask.width
  • ExportTask.height
  • ExportTask.dpi
  • ExportTask.create_central_pane()
  • ExportTask.create_dock_panes()
  • ExportTask.activated()
  • ExportTask.activate_cytoflow_task()
  • ExportTask.on_export()
• ExportFigurePlugin
  • ExportFigurePlugin.TASKS
• FlowTaskPane
  • FlowTaskPane.id
  • FlowTaskPane.name
  • FlowTaskPane.model
  • FlowTaskPane.handler
  • FlowTaskPane.layout
  • FlowTaskPane.canvas
  • FlowTaskPane.create()
  • FlowTaskPane.activate()
• FlowTask
  • FlowTask.id
  • FlowTask.name
  • FlowTask.model
  • FlowTask.handler
  • FlowTask.workflow_pane
  • FlowTask.view_pane
  • FlowTask.browser_pane
  • FlowTask.help_pane
  • FlowTask.plot_params_pane
  • FlowTask.op_plugins
  • FlowTask.view_plugins
  • FlowTask.menu_bar
  • FlowTask.tool_bars
  • FlowTask.filename
  • FlowTask.initialized()
  • FlowTask.activated()
  • FlowTask.create_central_pane()
  • FlowTask.create_dock_panes()
  • FlowTask.on_new()
  • FlowTask.on_open()
  • FlowTask.open_file()
  • FlowTask.on_save()
  • FlowTask.on_save_as()
  • FlowTask.on_export()
  • FlowTask.on_notebook()
  • FlowTask.on_prefs()
  • FlowTask.on_docs()
  • FlowTask.on_problem()
  • FlowTask.on_toggle_workflow()
  • FlowTask.on_toggle_view()
  • FlowTask.on_toggle_plot_params()
  • FlowTask.on_toggle_browser()
  • FlowTask.on_toggle_help()
  • FlowTask.on_about()
  • FlowTask.save_notebook()
  • FlowTask.show_toolbar_names()
• FlowTaskPlugin
  • FlowTaskPlugin.PREFERENCES
  • FlowTaskPlugin.PREFERENCES_PANES
  • FlowTaskPlugin.TASKS
• cytoflowgui.help_pane
• HelpDockPane
  • HelpDockPane.id
  • HelpDockPane.name
  • HelpDockPane.task
  • HelpDockPane.view_plugins
  • HelpDockPane.op_plugins
  • HelpDockPane.help_id
  • HelpDockPane.html
  • HelpDockPane.traits_view
  • HelpDockPane.create_contents()
• cytoflowgui.import_dialog
• not_true()
• not_false()
• sanitize_metadata()
• Tube
  • Tube.index
  • Tube.file
  • Tube.parent
  • Tube.conditions
  • Tube.metadata
  • Tube.all_conditions_set
  • Tube.conditions_hash()
• ExperimentColumn
  • ExperimentColumn.get_cell_color()
• eval_bool()
• ConvertingBool
  • ConvertingBool.evaluate()
  • ConvertingBool.validate()
• TubeTrait
  • TubeTrait.model
  • TubeTrait.name
  • TubeTrait.type
• ExperimentDialogModel
  • ExperimentDialogModel.tubes
  • ExperimentDialogModel.tube_traits
  • ExperimentDialogModel.tube_traits_dict
  • ExperimentDialogModel.counter
  • ExperimentDialogModel.valid
  • ExperimentDialogModel.dummy_experiment
  • ExperimentDialogModel.init()
  • ExperimentDialogModel.update_import_op()
  • ExperimentDialogModel.is_tube_unique()
• ExperimentDialogHandler
  • ExperimentDialogHandler.import_op
  • ExperimentDialogHandler.add_tubes
  • ExperimentDialogHandler.remove_tubes
  • ExperimentDialogHandler.add_variable
  • ExperimentDialogHandler.import_csv
  • ExperimentDialogHandler.selected_tubes
  • ExperimentDialogHandler.table_editor
  • ExperimentDialogHandler.updating
  • ExperimentDialogHandler.init()
  • ExperimentDialogHandler.close()
  • ExperimentDialogHandler.closed()
• cytoflowgui.matplotlib_backend_local
• Msg
  • Msg.DRAW
  • Msg.BLIT
  • Msg.WORKING
  • Msg.RESIZE_EVENT
  • Msg.MOUSE_PRESS_EVENT
  • Msg.MOUSE_MOVE_EVENT
  • Msg.MOUSE_RELEASE_EVENT
  • Msg.MOUSE_DOUBLE_CLICK_EVENT
  • Msg.PRINT
• log_exception()
• FigureCanvasQTAggLocal
  • FigureCanvasQTAggLocal.listen_for_remote()
  • FigureCanvasQTAggLocal.send_to_remote()
  • FigureCanvasQTAggLocal.leaveEvent()
  • FigureCanvasQTAggLocal.mousePressEvent()
  • FigureCanvasQTAggLocal.mouseDoubleClickEvent()
  • FigureCanvasQTAggLocal.mouseMoveEvent()
  • FigureCanvasQTAggLocal.mouseReleaseEvent()
  • FigureCanvasQTAggLocal.resizeEvent()
  • FigureCanvasQTAggLocal.paintEvent()
  • FigureCanvasQTAggLocal.print_figure()
• cytoflowgui.matplotlib_backend_remote
• Msg
  • Msg.DRAW
  • Msg.BLIT
  • Msg.WORKING
  • Msg.RESIZE_EVENT
  • Msg.MOUSE_PRESS_EVENT
  • Msg.MOUSE_MOVE_EVENT
  • Msg.MOUSE_RELEASE_EVENT
  • Msg.MOUSE_DOUBLE_CLICK_EVENT
  • Msg.DPI
  • Msg.PRINT
• log_exception()
• FigureCanvasAggRemote
  • FigureCanvasAggRemote.listen_for_local()
  • FigureCanvasAggRemote.send_to_local()
  • FigureCanvasAggRemote.draw()
  • FigureCanvasAggRemote.blit()
  • FigureCanvasAggRemote.set_working()
• new_figure_manager()
• show()
• FigureCanvas
• cytoflowgui.preferences
• CytoflowPreferences
  • CytoflowPreferences.preferences_path
  • CytoflowPreferences.always_use_default_layout
• CytoflowPreferencesPane
  • CytoflowPreferencesPane.model_factory
  • CytoflowPreferencesPane.view
• cytoflowgui.run
• log_notification_handler()
• log_excepthook()
• run_gui()
• monitor_remote_process()
• start_remote_process()
• remote_main()
• cytoflowgui.subset_controllers
• BoolSubsetHandler
  • BoolSubsetHandler.subset_view()
• CategorySubsetHandler
  • CategorySubsetHandler.subset_view()
• RangeSubsetHandler
  • RangeSubsetHandler.subset_view()
• subset_handler_factory()
• cytoflowgui.util
• DefaultFileDialog
• HintedMainWindow
  • HintedMainWindow.hint_width
  • HintedMainWindow.hint_height
  • HintedMainWindow.setFixedWidth()
  • HintedMainWindow.setFixedHeight()
  • HintedMainWindow.sizeHint()
• HintedWidget
  • HintedWidget.hint_width
  • HintedWidget.hint_height
  • HintedWidget.setFixedWidth()
  • HintedWidget.setFixedHeight()
  • HintedWidget.sizeHint()
• cytoflowgui.view_pane
• ViewDockPane
  • ViewDockPane.id
  • ViewDockPane.name
  • ViewDockPane.task
  • ViewDockPane.view_plugins
  • ViewDockPane.handler
  • ViewDockPane.create_contents()
  • ViewDockPane.show_toolbar_names()
• PlotParamsPane
  • PlotParamsPane.id
  • PlotParamsPane.name
  • PlotParamsPane.handler
  • PlotParamsPane.closable
  • PlotParamsPane.dock_area
  • PlotParamsPane.floatable
  • PlotParamsPane.movable
  • PlotParamsPane.visible
  • PlotParamsPane.create_contents()
• cytoflowgui.workflow_controller
• WorkflowItemHandler
  • WorkflowItemHandler.deletable
  • WorkflowItemHandler.icon
  • WorkflowItemHandler.name
  • WorkflowItemHandler.friendly_id
  • WorkflowItemHandler.op_plugins
  • WorkflowItemHandler.view_plugins
  • WorkflowItemHandler.conditions
  • WorkflowItemHandler.conditions_names
  • WorkflowItemHandler.previous_conditions
  • WorkflowItemHandler.previous_conditions_names
  • WorkflowItemHandler.statistics_names
  • WorkflowItemHandler.previous_statistics_names
  • WorkflowItemHandler.channels
  • WorkflowItemHandler.previous_channels
  • WorkflowItemHandler.tree_node
  • WorkflowItemHandler.operation_traits_view()
  • WorkflowItemHandler.view_traits_view()
  • WorkflowItemHandler.view_params_view()
  • WorkflowItemHandler.view_plot_name_view()
  • WorkflowItemHandler.experiment_view()
• WorkflowController
  • WorkflowController.workflow_handlers
  • WorkflowController.op_plugins
  • WorkflowController.view_plugins
  • WorkflowController.workflow_traits_view()
  • WorkflowController.selected_view_traits_view()
  • WorkflowController.selected_view_params_view()
  • WorkflowController.selected_view_plot_name_view()
  • WorkflowController.experiment_view()
  • WorkflowController.handler_factory()
  • WorkflowController.add_operation()
  • WorkflowController.activate_view()
• cytoflowgui.workflow_pane
• WorkflowDockPane
  • WorkflowDockPane.id
  • WorkflowDockPane.name
  • WorkflowDockPane.plugins
  • WorkflowDockPane.handler
  • WorkflowDockPane.create_contents()
  • WorkflowDockPane.show_toolbar_names()