cytoflowgui.op_plugins package

cytoflowgui.op_plugins

envisage.plugin.Plugin classes and GUI traitsui.handler.Controller classes to adapt modules from cytoflowgui.workflow.operations to the Qt / traitsui GUI.

The module docstrings are also the ones that are used for the GUI help panel.

Submodules

• cytoflowgui.op_plugins.autofluorescence
• AutofluorescenceHandler
• AutofluorescenceViewHandler
• AutofluorescencePlugin
  • AutofluorescencePlugin.operation_id
  • AutofluorescencePlugin.view_id
  • AutofluorescencePlugin.short_name
  • AutofluorescencePlugin.menu_group
  • AutofluorescencePlugin.get_operation()
  • AutofluorescencePlugin.get_handler()
  • AutofluorescencePlugin.get_icon()
• cytoflowgui.op_plugins.bead_calibration
• UnitHandler
• BeadCalibrationHandler
  • BeadCalibrationHandler.add_channel
  • BeadCalibrationHandler.remove_channel
  • BeadCalibrationHandler.channels
  • BeadCalibrationHandler.beads_name_choices
  • BeadCalibrationHandler.beads_units
• BeadCalibrationViewHandler
• BeadCalibrationPlugin
  • BeadCalibrationPlugin.operation_id
  • BeadCalibrationPlugin.view_id
  • BeadCalibrationPlugin.short_name
  • BeadCalibrationPlugin.menu_group
  • BeadCalibrationPlugin.get_operation()
  • BeadCalibrationPlugin.get_handler()
  • BeadCalibrationPlugin.get_icon()
• cytoflowgui.op_plugins.binning
• BinningHandler
• BinningViewHandler
• BinningPlugin
  • BinningPlugin.operation_id
  • BinningPlugin.view_id
  • BinningPlugin.short_name
  • BinningPlugin.menu_group
  • BinningPlugin.get_operation()
  • BinningPlugin.get_handler()
  • BinningPlugin.get_icon()
• cytoflowgui.op_plugins.bleedthrough_linear
• ChannelHandler
• BleedthroughLinearHandler
  • BleedthroughLinearHandler.add_channel
  • BleedthroughLinearHandler.remove_channel
  • BleedthroughLinearHandler.channels
• BleedthroughLinearViewHandler
• BleedthroughLinearPlugin
  • BleedthroughLinearPlugin.operation_id
  • BleedthroughLinearPlugin.view_id
  • BleedthroughLinearPlugin.short_name
  • BleedthroughLinearPlugin.menu_group
  • BleedthroughLinearPlugin.get_operation()
  • BleedthroughLinearPlugin.get_handler()
  • BleedthroughLinearPlugin.get_icon()
• cytoflowgui.op_plugins.category
• CategoryOpSubsetHandler
  • CategoryOpSubsetHandler.previous_conditions
• CategoryHandler
  • CategoryHandler.add_subset
  • CategoryHandler.remove_subset
• CategoryPlugin
  • CategoryPlugin.operation_id
  • CategoryPlugin.view_id
  • CategoryPlugin.short_name
  • CategoryPlugin.menu_group
  • CategoryPlugin.get_operation()
  • CategoryPlugin.get_handler()
  • CategoryPlugin.get_icon()
• cytoflowgui.op_plugins.channel_stat
• ChannelStatisticHandler
• ChannelStatisticPlugin
  • ChannelStatisticPlugin.operation_id
  • ChannelStatisticPlugin.view_id
  • ChannelStatisticPlugin.short_name
  • ChannelStatisticPlugin.menu_group
  • ChannelStatisticPlugin.get_operation()
  • ChannelStatisticPlugin.get_handler()
  • ChannelStatisticPlugin.get_icon()
• cytoflowgui.op_plugins.color_translation
• ControlHandler
• ColorTranslationHandler
  • ColorTranslationHandler.add_control
  • ColorTranslationHandler.remove_control
  • ColorTranslationHandler.channels
• ColorTranslationViewHandler
• ColorTranslationPlugin
  • ColorTranslationPlugin.operation_id
  • ColorTranslationPlugin.view_id
  • ColorTranslationPlugin.short_name
  • ColorTranslationPlugin.menu_group
  • ColorTranslationPlugin.get_operation()
  • ColorTranslationPlugin.get_handler()
  • ColorTranslationPlugin.get_icon()
• cytoflowgui.op_plugins.density
• DensityGateHandler
  • DensityGateHandler.show_advanced
• DensityGateViewHandler
• DensityGatePlugin
  • DensityGatePlugin.operation_id
  • DensityGatePlugin.view_id
  • DensityGatePlugin.short_name
  • DensityGatePlugin.menu_group
  • DensityGatePlugin.get_operation()
  • DensityGatePlugin.get_handler()
  • DensityGatePlugin.get_icon()
• cytoflowgui.op_plugins.flowclean
• ChannelHandler
• FlowCleanHandler
  • FlowCleanHandler.add_channel
  • FlowCleanHandler.remove_channel
  • FlowCleanHandler.channels
  • FlowCleanHandler.show_advanced_options
• FlowCleanViewHandler
• FlowCleanPlugin
  • FlowCleanPlugin.operation_id
  • FlowCleanPlugin.view_id
  • FlowCleanPlugin.short_name
  • FlowCleanPlugin.menu_group
  • FlowCleanPlugin.get_operation()
  • FlowCleanPlugin.get_handler()
  • FlowCleanPlugin.get_icon()
• cytoflowgui.op_plugins.flowpeaks
• FlowPeaksHandler
• FlowPeaksViewHandler
• FlowPeaksPlugin
  • FlowPeaksPlugin.operation_id
  • FlowPeaksPlugin.view_id
  • FlowPeaksPlugin.short_name
  • FlowPeaksPlugin.menu_group
  • FlowPeaksPlugin.get_operation()
  • FlowPeaksPlugin.get_handler()
  • FlowPeaksPlugin.get_icon()
• cytoflowgui.op_plugins.gaussian_1d
• GaussianMixture1DHandler
• GaussianMixture1DViewHandler
• GaussianMixture1DPlugin
  • GaussianMixture1DPlugin.operation_id
  • GaussianMixture1DPlugin.view_id
  • GaussianMixture1DPlugin.short_name
  • GaussianMixture1DPlugin.menu_group
  • GaussianMixture1DPlugin.get_operation()
  • GaussianMixture1DPlugin.get_handler()
  • GaussianMixture1DPlugin.get_icon()
• cytoflowgui.op_plugins.gaussian_2d
• GaussianMixture2DHandler
• GaussianMixture2DViewHandler
• GaussianMixture2DPlugin
  • GaussianMixture2DPlugin.operation_id
  • GaussianMixture2DPlugin.view_id
  • GaussianMixture2DPlugin.short_name
  • GaussianMixture2DPlugin.menu_group
  • GaussianMixture2DPlugin.get_operation()
  • GaussianMixture2DPlugin.get_handler()
  • GaussianMixture2DPlugin.get_icon()
• cytoflowgui.op_plugins.hierarchy
• GateHandler
  • GateHandler.values
• HierarchyHandler
  • HierarchyHandler.add_gate
  • HierarchyHandler.remove_gate
  • HierarchyHandler.conditions
• HierarchyPlugin
  • HierarchyPlugin.operation_id
  • HierarchyPlugin.view_id
  • HierarchyPlugin.short_name
  • HierarchyPlugin.menu_group
  • HierarchyPlugin.get_operation()
  • HierarchyPlugin.get_handler()
  • HierarchyPlugin.get_icon()
• cytoflowgui.op_plugins.i_op_plugin
• IOperationPlugin
  • IOperationPlugin.id
  • IOperationPlugin.operation_id
  • IOperationPlugin.name
  • IOperationPlugin.short_name
  • IOperationPlugin.get_operation()
  • IOperationPlugin.get_handler()
  • IOperationPlugin.get_icon()
  • IOperationPlugin.get_help()
• OpPluginManager
• cytoflowgui.op_plugins.import_op
• ChannelHandler
• ImportHandler
  • ImportHandler.setup_event
  • ImportHandler.reset_channels_event
  • ImportHandler.samples
  • ImportHandler.dialog_model
• ImportPlugin
  • ImportPlugin.operation_id
  • ImportPlugin.view_id
  • ImportPlugin.short_name
  • ImportPlugin.menu_group
  • ImportPlugin.get_operation()
  • ImportPlugin.get_handler()
  • ImportPlugin.get_icon()
• cytoflowgui.op_plugins.kmeans
• KMeansHandler
• KMeansViewHandler
• KMeansPlugin
  • KMeansPlugin.operation_id
  • KMeansPlugin.view_id
  • KMeansPlugin.short_name
  • KMeansPlugin.menu_group
  • KMeansPlugin.get_operation()
  • KMeansPlugin.get_handler()
  • KMeansPlugin.get_icon()
• cytoflowgui.op_plugins.merge_stat
• MergeStatisticsHandler
• MergeStatisticsPlugin
  • MergeStatisticsPlugin.operation_id
  • MergeStatisticsPlugin.view_id
  • MergeStatisticsPlugin.short_name
  • MergeStatisticsPlugin.menu_group
  • MergeStatisticsPlugin.get_operation()
  • MergeStatisticsPlugin.get_handler()
  • MergeStatisticsPlugin.get_icon()
• cytoflowgui.op_plugins.mst
• MSTOpHandler
• MSTPlugin
  • MSTPlugin.operation_id
  • MSTPlugin.view_id
  • MSTPlugin.short_name
  • MSTPlugin.menu_group
  • MSTPlugin.get_operation()
  • MSTPlugin.get_handler()
  • MSTPlugin.get_icon()
• cytoflowgui.op_plugins.multi_channel_stat
• FunctionHandler
• MultiChannelStatisticHandler
  • MultiChannelStatisticHandler.add_function
  • MultiChannelStatisticHandler.remove_function
  • MultiChannelStatisticHandler.channels
• MultiChannelStatisticPlugin
  • MultiChannelStatisticPlugin.operation_id
  • MultiChannelStatisticPlugin.view_id
  • MultiChannelStatisticPlugin.short_name
  • MultiChannelStatisticPlugin.menu_group
  • MultiChannelStatisticPlugin.get_operation()
  • MultiChannelStatisticPlugin.get_handler()
  • MultiChannelStatisticPlugin.get_icon()
• cytoflowgui.op_plugins.op_plugin_base
• OpHandler
  • OpHandler.context
• PluginHelpMixin
  • PluginHelpMixin.get_help()
• cytoflowgui.op_plugins.pca
• ChannelHandler
• PCAHandler
  • PCAHandler.add_channel
  • PCAHandler.remove_channel
  • PCAHandler.channels
• PCAPlugin
  • PCAPlugin.operation_id
  • PCAPlugin.view_id
  • PCAPlugin.short_name
  • PCAPlugin.menu_group
  • PCAPlugin.get_operation()
  • PCAPlugin.get_handler()
  • PCAPlugin.get_icon()
• cytoflowgui.op_plugins.polygon
• PolygonViewParamsHandler
• PolygonHandler
• PolygonViewHandler
• PolygonPlugin
  • PolygonPlugin.operation_id
  • PolygonPlugin.view_id
  • PolygonPlugin.short_name
  • PolygonPlugin.menu_group
  • PolygonPlugin.get_operation()
  • PolygonPlugin.get_handler()
  • PolygonPlugin.get_icon()
• cytoflowgui.op_plugins.quad
• QuadHandler
• QuadViewHandler
• QuadPlugin
  • QuadPlugin.operation_id
  • QuadPlugin.view_id
  • QuadPlugin.short_name
  • QuadPlugin.menu_group
  • QuadPlugin.get_operation()
  • QuadPlugin.get_handler()
  • QuadPlugin.get_icon()
• cytoflowgui.op_plugins.range
• RangeHandler
• RangeViewHandler
• RangePlugin
  • RangePlugin.operation_id
  • RangePlugin.view_id
  • RangePlugin.short_name
  • RangePlugin.menu_group
  • RangePlugin.get_operation()
  • RangePlugin.get_handler()
  • RangePlugin.get_icon()
• cytoflowgui.op_plugins.range2d
• Range2DViewParamsHandler
• Range2DHandler
• Range2DViewHandler
• Range2DPlugin
  • Range2DPlugin.operation_id
  • Range2DPlugin.view_id
  • Range2DPlugin.short_name
  • Range2DPlugin.menu_group
  • Range2DPlugin.get_operation()
  • Range2DPlugin.get_handler()
  • Range2DPlugin.get_icon()
• cytoflowgui.op_plugins.ratio
• RatioHandler
• RatioPlugin
  • RatioPlugin.operation_id
  • RatioPlugin.view_id
  • RatioPlugin.short_name
  • RatioPlugin.menu_group
  • RatioPlugin.get_operation()
  • RatioPlugin.get_handler()
  • RatioPlugin.get_icon()
• cytoflowgui.op_plugins.register
• ChannelHandler
• RegistrationHandler
  • RegistrationHandler.add_channel
  • RegistrationHandler.remove_channel
  • RegistrationHandler.channels
• RegistrationDiagnosticViewHandler
• RegistrationPlugin
  • RegistrationPlugin.operation_id
  • RegistrationPlugin.view_id
  • RegistrationPlugin.short_name
  • RegistrationPlugin.menu_group
  • RegistrationPlugin.get_operation()
  • RegistrationPlugin.get_handler()
  • RegistrationPlugin.get_icon()
• cytoflowgui.op_plugins.som
• ChannelHandler
• SOMHandler
  • SOMHandler.add_channel
  • SOMHandler.remove_channel
  • SOMHandler.show_advanced
  • SOMHandler.channels
• SOMViewHandler
• SOMPlugin
  • SOMPlugin.operation_id
  • SOMPlugin.view_id
  • SOMPlugin.short_name
  • SOMPlugin.menu_group
  • SOMPlugin.get_operation()
  • SOMPlugin.get_handler()
  • SOMPlugin.get_icon()
• cytoflowgui.op_plugins.tasbe
• BleedthroughControlHandler
• TranslationControlHandler
• UnitHandler
• TasbeHandler
  • TasbeHandler.beads_name_choices
  • TasbeHandler.beads_units
• TasbeViewHandler
• TasbePlugin
  • TasbePlugin.operation_id
  • TasbePlugin.view_id
  • TasbePlugin.short_name
  • TasbePlugin.menu_group
  • TasbePlugin.get_operation()
  • TasbePlugin.get_handler()
  • TasbePlugin.get_icon()
• cytoflowgui.op_plugins.threshold
• ThresholdHandler
• ThresholdViewHandler
• ThresholdPlugin
  • ThresholdPlugin.operation_id
  • ThresholdPlugin.view_id
  • ThresholdPlugin.short_name
  • ThresholdPlugin.menu_group
  • ThresholdPlugin.get_operation()
  • ThresholdPlugin.get_handler()
  • ThresholdPlugin.get_icon()
• cytoflowgui.op_plugins.tsne
• ChannelHandler
• tSNEHandler
  • tSNEHandler.add_channel
  • tSNEHandler.remove_channel
  • tSNEHandler.channels
• tSNEPlugin
  • tSNEPlugin.operation_id
  • tSNEPlugin.view_id
  • tSNEPlugin.short_name
  • tSNEPlugin.menu_group
  • tSNEPlugin.get_operation()
  • tSNEPlugin.get_handler()
  • tSNEPlugin.get_icon()
• cytoflowgui.op_plugins.xform_stat
• TransformStatisticHandler
  • TransformStatisticHandler.indices
  • TransformStatisticHandler.levels
  • TransformStatisticHandler.features
• TransformStatisticPlugin
  • TransformStatisticPlugin.operation_id
  • TransformStatisticPlugin.view_id
  • TransformStatisticPlugin.short_name
  • TransformStatisticPlugin.menu_group
  • TransformStatisticPlugin.get_operation()
  • TransformStatisticPlugin.get_handler()
  • TransformStatisticPlugin.get_icon()