cytoflowgui.workflow.operations.color_translation#

class cytoflowgui.workflow.operations.color_translation.Control[source]#: Bases: HasTraits

class cytoflowgui.workflow.operations.color_translation.ColorTranslationWorkflowOp[source]#

Bases: WorkflowOperation, ColorTranslationOp

default_view(**kwargs)[source]#

Returns a diagnostic plot to see if the bleedthrough spline estimation is working.

Returns:: A diagnostic view, call ColorTranslationDiagnostic.plot to see the diagnostic plots
Return type:: IView

estimate(experiment)[source]#

Estimate the mapping from the two-channel controls

Parameters:

experiment (Experiment) – The Experiment used to check the voltages, etc. of the control tubes. Also the source of the operation history that is replayed on the control tubes.
subset (Str) – A Python expression used to subset the controls before estimating the color translation parameters.

apply(experiment)[source]#

Applies the color translation to an experiment

Parameters:

experiment (Experiment) – the old_experiment to which this op is applied

Returns:

a new experiment with the color translation applied. The corrected channels also have the following new metadata:

channel_translation : Str Which channel was this one translated to?

channel_translation_fn : Callable (pandas.Series –> pandas.Series) The function that translated this channel

Return type:

Experiment

should_clear_estimate(changed, payload)[source]#

clear_estimate()[source]#

get_notebook_code(idx)[source]#

class cytoflowgui.workflow.operations.color_translation.ColorTranslationWorkflowView[source]#

Bases: WorkflowView, ColorTranslationDiagnostic

should_plot(changed, payload)[source]#

Should the owning WorkflowItem refresh the plot when certain things change? changed can be: - Changed.VIEW – the view’s parameters changed - Changed.RESULT – this WorkflowItem’s result changed - Changed.PREV_RESULT – the previous WorkflowItem’s result changed - Changed.ESTIMATE_RESULT – the results of calling “estimate” changed

If should_plot is called from a notification handler, the payload is the handler event parameter.

get_notebook_code(idx)[source]#