Index

A

A (cytoflow.utility.logicle_scale.LogicleScale attribute) activate() (cytoflow.utility.minisom.MiniSom method) (cytoflowgui.export_task.ExportTaskPane method) (cytoflowgui.flow_task.FlowTaskPane method) activate_cytoflow_task() (cytoflowgui.export_task.ExportTask method) activate_view() (cytoflowgui.workflow_controller.WorkflowController method) activated() (cytoflowgui.export_task.ExportTask method) (cytoflowgui.flow_task.FlowTask method) activation_response() (cytoflow.utility.minisom.MiniSom method) add_channel (cytoflowgui.op_plugins.bead_calibration.BeadCalibrationHandler attribute) (cytoflowgui.op_plugins.bleedthrough_linear.BleedthroughLinearHandler attribute) (cytoflowgui.op_plugins.flowclean.FlowCleanHandler attribute) (cytoflowgui.op_plugins.pca.PCAHandler attribute) (cytoflowgui.op_plugins.register.RegistrationHandler attribute) (cytoflowgui.op_plugins.som.SOMHandler attribute) (cytoflowgui.op_plugins.tsne.tSNEHandler attribute) (cytoflowgui.view_plugins.parallel_coords.ParallelCoordinatesHandler attribute) (cytoflowgui.view_plugins.radviz.RadvizHandler attribute) add_channel() (cytoflow.experiment.Experiment method) add_condition() (cytoflow.experiment.Experiment method) add_control (cytoflowgui.op_plugins.color_translation.ColorTranslationHandler attribute) add_events() (cytoflow.experiment.Experiment method) add_events_multi() (cytoflow.experiment.Experiment method) add_function (cytoflowgui.op_plugins.multi_channel_stat.MultiChannelStatisticHandler attribute) add_gate (cytoflowgui.op_plugins.hierarchy.HierarchyHandler attribute) ADD_ITEMS (cytoflowgui.workflow.workflow.Msg attribute) add_operation() (cytoflowgui.workflow_controller.WorkflowController method) add_subset (cytoflowgui.op_plugins.category.CategoryHandler attribute) add_tubes (cytoflowgui.import_dialog.ExperimentDialogHandler attribute) add_variable (cytoflowgui.import_dialog.ExperimentDialogHandler attribute) all_conditions_set (cytoflowgui.import_dialog.Tube attribute) all_elbows (cytoflow.utility.kneed.KneeLocator property) all_elbows_y (cytoflow.utility.kneed.KneeLocator property) all_norm_elbows (cytoflow.utility.kneed.KneeLocator property) all_norm_elbows_y (cytoflow.utility.kneed.KneeLocator property) AlphaColormap (class in cytoflow.views.histogram_2d) always_use_default_layout (cytoflowgui.cytoflow_application.CytoflowApplication attribute) (cytoflowgui.preferences.CytoflowPreferences attribute) AnnotatingView (class in cytoflow.operations.base_op_views) application_error (cytoflowgui.cytoflow_application.CytoflowApplication attribute) application_log (cytoflowgui.cytoflow_application.CytoflowApplication attribute) application_warning (cytoflowgui.cytoflow_application.CytoflowApplication attribute) APPLY (cytoflowgui.workflow.Changed attribute) apply() (cytoflow.operations.autofluorescence.AutofluorescenceOp method) (cytoflow.operations.bead_calibration.BeadCalibrationOp method) (cytoflow.operations.binning.BinningOp method) (cytoflow.operations.bleedthrough_linear.BleedthroughLinearOp method) (cytoflow.operations.category.CategoryOp method) (cytoflow.operations.channel_stat.ChannelStatisticOp method) (cytoflow.operations.color_translation.ColorTranslationOp method) (cytoflow.operations.density.DensityGateOp method) (cytoflow.operations.flowclean.FlowCleanOp method) (cytoflow.operations.flowpeaks.FlowPeaksOp method) (cytoflow.operations.frame_stat.FrameStatisticOp method) (cytoflow.operations.gaussian.GaussianMixtureOp method) (cytoflow.operations.hierarchy.HierarchyOp method) (cytoflow.operations.i_operation.IOperation method) (cytoflow.operations.import_op.ImportOp method) (cytoflow.operations.kmeans.KMeansOp method) (cytoflow.operations.mst.ConditionSelectionOp method) (cytoflow.operations.mst.MSTOp method) (cytoflow.operations.pca.PCAOp method) (cytoflow.operations.polygon.PolygonOp method) (cytoflow.operations.quad.QuadOp method) (cytoflow.operations.range.RangeOp method) (cytoflow.operations.range2d.Range2DOp method) (cytoflow.operations.ratio.RatioOp method) (cytoflow.operations.register.RegistrationOp method) (cytoflow.operations.som.SOMOp method) (cytoflow.operations.threshold.ThresholdOp method) (cytoflow.operations.tsne.tSNEOp method) (cytoflow.operations.xform_stat.TransformStatisticOp method) (cytoflowgui.workflow.operations.autofluorescence.AutofluorescenceWorkflowOp method) (cytoflowgui.workflow.operations.bead_calibration.BeadCalibrationWorkflowOp method) (cytoflowgui.workflow.operations.bleedthrough_linear.BleedthroughLinearWorkflowOp method) (cytoflowgui.workflow.operations.channel_stat.ChannelStatisticWorkflowOp method) (cytoflowgui.workflow.operations.color_translation.ColorTranslationWorkflowOp method) (cytoflowgui.workflow.operations.density.DensityGateWorkflowOp method) (cytoflowgui.workflow.operations.flowclean.FlowCleanWorkflowOp method) (cytoflowgui.workflow.operations.flowpeaks.FlowPeaksWorkflowOp method) (cytoflowgui.workflow.operations.gaussian_1d.GaussianMixture1DWorkflowOp method) (cytoflowgui.workflow.operations.gaussian_2d.GaussianMixture2DWorkflowOp method) (cytoflowgui.workflow.operations.import_op.ImportWorkflowOp method) (cytoflowgui.workflow.operations.kmeans.KMeansWorkflowOp method) (cytoflowgui.workflow.operations.merge_stat.MergeStatisticsWorkflowOp method) (cytoflowgui.workflow.operations.multi_channel_stat.MultiChannelStatisticWorkflowOp method) (cytoflowgui.workflow.operations.pca.PCAWorkflowOp method) (cytoflowgui.workflow.operations.som.SOMWorkflowOp method) (cytoflowgui.workflow.operations.tasbe.TasbeWorkflowOp method) (cytoflowgui.workflow.operations.tsne.tSNEWorkflowOp method) (cytoflowgui.workflow.operations.xform_stat.TransformStatisticWorkflowOp method) (cytoflowgui.workflow.workflow_item.WorkflowItem method)

APPLY_CALLED (cytoflowgui.workflow.workflow.Msg attribute) area_under_cdf() (cytoflow.utility.consensus.ConsensusClustering method) autodetect_name_metadata() (in module cytoflow.operations.import_op) AUTOFLUORESCENCE (cytoflowgui.workflow.operations.tasbe.Progress attribute) AutofluorescenceDiagnosticView (class in cytoflow.operations.autofluorescence) AutofluorescenceHandler (class in cytoflowgui.op_plugins.autofluorescence) AutofluorescenceOp (class in cytoflow.operations.autofluorescence) AutofluorescencePlugin (class in cytoflowgui.op_plugins.autofluorescence) AutofluorescenceViewHandler (class in cytoflowgui.op_plugins.autofluorescence) AutofluorescenceWorkflowOp (class in cytoflowgui.workflow.operations.autofluorescence) AutofluorescenceWorkflowView (class in cytoflowgui.workflow.operations.autofluorescence)

B

b (cytoflow.utility.hlog_scale.HlogScale attribute) background_color (cytoflowgui.editors.color_text_editor.ColorTextEditor attribute) BarChartHandler (class in cytoflowgui.view_plugins.bar_chart) BarChartParamsHandler (class in cytoflowgui.view_plugins.bar_chart) BarChartPlotParams (class in cytoflowgui.workflow.views.bar_chart) BarChartPlugin (class in cytoflowgui.view_plugins.bar_chart) BarChartView (class in cytoflow.views.bar_chart) BarChartWorkflowView (class in cytoflowgui.workflow.views.bar_chart) base (cytoflow.views.export_fcs.ExportFCS attribute) Base1DStatisticsView (class in cytoflow.views.base_views) Base1DView (class in cytoflow.views.base_views) Base2DStatisticsView (class in cytoflow.views.base_views) Base2DView (class in cytoflow.views.base_views) BaseDataView (class in cytoflow.views.base_views) BaseNDView (class in cytoflow.views.base_views) BasePlotParams (class in cytoflowgui.workflow.views.view_base) BaseStatisticsView (class in cytoflow.views.base_views) BaseView (class in cytoflow.views.base_views) bead_brightness_cutoff (cytoflow.operations.bead_calibration.BeadCalibrationOp attribute) bead_brightness_threshold (cytoflow.operations.bead_calibration.BeadCalibrationOp attribute) BEAD_CALIBRATION (cytoflowgui.workflow.operations.tasbe.Progress attribute) bead_histogram_bins (cytoflow.operations.bead_calibration.BeadCalibrationOp attribute) bead_peak_quantile (cytoflow.operations.bead_calibration.BeadCalibrationOp attribute) BeadCalibrationDiagnostic (class in cytoflow.operations.bead_calibration) BeadCalibrationHandler (class in cytoflowgui.op_plugins.bead_calibration) BeadCalibrationOp (class in cytoflow.operations.bead_calibration) BeadCalibrationPlugin (class in cytoflowgui.op_plugins.bead_calibration) BeadCalibrationViewHandler (class in cytoflowgui.op_plugins.bead_calibration) BeadCalibrationWorkflowOp (class in cytoflowgui.workflow.operations.bead_calibration) BeadCalibrationWorkflowView (class in cytoflowgui.workflow.operations.bead_calibration) BEADS (cytoflow.operations.bead_calibration.BeadCalibrationOp attribute) beads (cytoflow.operations.bead_calibration.BeadCalibrationOp attribute) beads_file (cytoflow.operations.bead_calibration.BeadCalibrationOp attribute) beads_name_choices (cytoflowgui.op_plugins.bead_calibration.BeadCalibrationHandler attribute) (cytoflowgui.op_plugins.tasbe.TasbeHandler attribute) beads_units (cytoflowgui.op_plugins.bead_calibration.BeadCalibrationHandler attribute) (cytoflowgui.op_plugins.tasbe.TasbeHandler attribute) BeadUnit (class in cytoflowgui.workflow.operations.tasbe) best_k() (cytoflow.utility.consensus.ConsensusClustering method) bin_width (cytoflow.operations.binning.BinningOp attribute) BinningHandler (class in cytoflowgui.op_plugins.binning) BinningOp (class in cytoflow.operations.binning) BinningPlugin (class in cytoflowgui.op_plugins.binning) BinningView (class in cytoflow.operations.binning) BinningViewHandler (class in cytoflowgui.op_plugins.binning) BinningWorkflowOp (class in cytoflowgui.workflow.operations.binning)

BinningWorkflowView (class in cytoflowgui.workflow.operations.binning) bins (cytoflow.operations.density.DensityGateOp attribute) blank_file (cytoflow.operations.autofluorescence.AutofluorescenceOp attribute) blank_file_conditions (cytoflow.operations.autofluorescence.AutofluorescenceOp attribute) BLEEDTHROUGH (cytoflowgui.workflow.operations.tasbe.Progress attribute) BleedthroughControl (class in cytoflowgui.workflow.operations.tasbe) BleedthroughControlHandler (class in cytoflowgui.op_plugins.tasbe) BleedthroughLinearDiagnostic (class in cytoflow.operations.bleedthrough_linear) BleedthroughLinearHandler (class in cytoflowgui.op_plugins.bleedthrough_linear) BleedthroughLinearOp (class in cytoflow.operations.bleedthrough_linear) BleedthroughLinearPlugin (class in cytoflowgui.op_plugins.bleedthrough_linear) BleedthroughLinearViewHandler (class in cytoflowgui.op_plugins.bleedthrough_linear) BleedthroughLinearWorkflowOp (class in cytoflowgui.workflow.operations.bleedthrough_linear) BleedthroughLinearWorkflowView (class in cytoflowgui.workflow.operations.bleedthrough_linear) BLIT (cytoflowgui.matplotlib_backend_local.Msg attribute) (cytoflowgui.matplotlib_backend_remote.Msg attribute) blit() (cytoflowgui.matplotlib_backend_remote.FigureCanvasAggRemote method) BoolSubset (class in cytoflowgui.workflow.subset) BoolSubsetHandler (class in cytoflowgui.subset_controllers) bootstrap() (in module cytoflow.utility.algorithms) browser_pane (cytoflowgui.flow_task.FlowTask attribute) bw (cytoflow.operations.register.RegistrationOp attribute) by (cytoflow.operations.base_op_views.ByView attribute) (cytoflow.operations.channel_stat.ChannelStatisticOp attribute) (cytoflow.operations.density.DensityGateOp attribute) (cytoflow.operations.density.DensityGateView attribute) (cytoflow.operations.flowpeaks.FlowPeaks1DView attribute) (cytoflow.operations.flowpeaks.FlowPeaks2DDensityView attribute) (cytoflow.operations.flowpeaks.FlowPeaks2DView attribute) (cytoflow.operations.flowpeaks.FlowPeaksOp attribute) (cytoflow.operations.frame_stat.FrameStatisticOp attribute) (cytoflow.operations.gaussian.GaussianMixture1DView attribute) (cytoflow.operations.gaussian.GaussianMixture2DView attribute) (cytoflow.operations.gaussian.GaussianMixtureOp attribute) (cytoflow.operations.kmeans.KMeans1DView attribute) (cytoflow.operations.kmeans.KMeans2DView attribute) (cytoflow.operations.kmeans.KMeansOp attribute) (cytoflow.operations.pca.PCAOp attribute) (cytoflow.operations.register.RegistrationOp attribute) (cytoflow.operations.som.SOMOp attribute) (cytoflow.operations.tsne.tSNEOp attribute) (cytoflow.operations.xform_stat.TransformStatisticOp attribute) (cytoflow.views.export_fcs.ExportFCS attribute) By1DView (class in cytoflow.operations.base_op_views) By2DView (class in cytoflow.operations.base_op_views) ByView (class in cytoflow.operations.base_op_views)

C

CallbackHandler (class in cytoflowgui.utility.logging) CallingMessageRecord (class in cytoflowgui.utility.event_tracer) canvas (cytoflowgui.cytoflow_application.CytoflowApplication attribute) (cytoflowgui.export_task.ExportTaskPane attribute) (cytoflowgui.flow_task.FlowTaskPane attribute) cartesian() (in module cytoflow.utility.util_functions) CategoryHandler (class in cytoflowgui.op_plugins.category) CategoryOp (class in cytoflow.operations.category) CategoryOpSubset (class in cytoflowgui.workflow.operations.category) CategoryOpSubsetHandler (class in cytoflowgui.op_plugins.category) CategoryPlugin (class in cytoflowgui.op_plugins.category) CategorySubset (class in cytoflowgui.workflow.subset) CategorySubsetHandler (class in cytoflowgui.subset_controllers) CategoryWorkflowOp (class in cytoflowgui.workflow.operations.category) cdf() (cytoflow.utility.consensus.ConsensusClustering method) CFloatOrNone (class in cytoflow.utility.custom_traits) CHANGE_CURRENT_VIEW (cytoflowgui.workflow.workflow.Msg attribute) change_in_area_under_cdf() (cytoflow.utility.consensus.ConsensusClustering method) Changed (class in cytoflowgui.workflow) changed (cytoflowgui.workflow.operations.operation_base.IWorkflowOperation attribute) (cytoflowgui.workflow.views.view_base.IWorkflowView attribute) ChangedStr (class in cytoflow.utility.custom_traits) ChangeEventRecorder (class in cytoflowgui.utility.event_tracer) ChangeMessageRecord (class in cytoflowgui.utility.event_tracer) Channel (class in cytoflowgui.workflow.operations.bleedthrough_linear) (class in cytoflowgui.workflow.operations.flowclean) (class in cytoflowgui.workflow.operations.import_op) (class in cytoflowgui.workflow.operations.pca) (class in cytoflowgui.workflow.operations.register) (class in cytoflowgui.workflow.operations.som) (class in cytoflowgui.workflow.operations.tsne) (class in cytoflowgui.workflow.views.radviz) (class in cytoflowgui.workflow.views.view_base) channel (cytoflow.operations.base_op_views.Op1DView attribute) (cytoflow.operations.binning.BinningOp attribute) (cytoflow.operations.binning.BinningView attribute) (cytoflow.operations.channel_stat.ChannelStatisticOp attribute) (cytoflow.operations.flowpeaks.FlowPeaks1DView attribute) (cytoflow.operations.gaussian.GaussianMixture1DView attribute) (cytoflow.operations.kmeans.KMeans1DView attribute) (cytoflow.operations.range.RangeOp attribute) (cytoflow.operations.range.RangeSelection attribute) (cytoflow.operations.threshold.ThresholdOp attribute) (cytoflow.operations.threshold.ThresholdSelection attribute) (cytoflow.utility.logicle_scale.LogicleScale attribute) (cytoflow.utility.scale.IScale attribute) (cytoflow.views.base_views.Base1DView attribute) (cytoflow.views.histogram.HistogramView attribute) (cytoflow.views.kde_1d.Kde1DView attribute) (cytoflow.views.violin.ViolinPlotView attribute) (cytoflowgui.experiment_pane_model.ChannelNode attribute) ChannelHandler (class in cytoflowgui.op_plugins.bleedthrough_linear) (class in cytoflowgui.op_plugins.flowclean) (class in cytoflowgui.op_plugins.import_op) (class in cytoflowgui.op_plugins.pca) (class in cytoflowgui.op_plugins.register) (class in cytoflowgui.op_plugins.som) (class in cytoflowgui.op_plugins.tsne) (class in cytoflowgui.view_plugins.parallel_coords) (class in cytoflowgui.view_plugins.radviz) ChannelNode (class in cytoflowgui.experiment_pane_model) channels (cytoflow.experiment.Experiment attribute) (cytoflow.operations.autofluorescence.AutofluorescenceOp attribute) (cytoflow.operations.flowclean.FlowCleanOp attribute) (cytoflow.operations.flowpeaks.FlowPeaksOp attribute) (cytoflow.operations.gaussian.GaussianMixtureOp attribute) (cytoflow.operations.import_op.ImportOp attribute) (cytoflow.operations.kmeans.KMeansOp attribute) (cytoflow.operations.pca.PCAOp attribute) (cytoflow.operations.register.RegistrationOp attribute) (cytoflow.operations.som.SOMOp attribute) (cytoflow.operations.tsne.tSNEOp attribute) (cytoflow.views.base_views.BaseNDView attribute) (cytoflow.views.parallel_coords.ParallelCoordinatesView attribute) (cytoflow.views.radviz.RadvizView attribute) (cytoflowgui.op_plugins.bead_calibration.BeadCalibrationHandler attribute) (cytoflowgui.op_plugins.bleedthrough_linear.BleedthroughLinearHandler attribute) (cytoflowgui.op_plugins.color_translation.ColorTranslationHandler attribute) (cytoflowgui.op_plugins.flowclean.FlowCleanHandler attribute) (cytoflowgui.op_plugins.multi_channel_stat.MultiChannelStatisticHandler attribute) (cytoflowgui.op_plugins.pca.PCAHandler attribute) (cytoflowgui.op_plugins.register.RegistrationHandler attribute) (cytoflowgui.op_plugins.som.SOMHandler attribute) (cytoflowgui.op_plugins.tsne.tSNEHandler attribute) (cytoflowgui.view_plugins.parallel_coords.ParallelCoordinatesHandler attribute) (cytoflowgui.view_plugins.radviz.RadvizHandler attribute) (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) (cytoflowgui.workflow_controller.WorkflowItemHandler attribute) ChannelsNode (class in cytoflowgui.experiment_pane_model) ChannelStatisticHandler (class in cytoflowgui.op_plugins.channel_stat) ChannelStatisticOp (class in cytoflow.operations.channel_stat) ChannelStatisticPlugin (class in cytoflowgui.op_plugins.channel_stat) ChannelStatisticWorkflowOp (class in cytoflowgui.workflow.operations.channel_stat) check_tube() (in module cytoflow.operations.import_op) ci() (in module cytoflow.utility.algorithms) CIntOrNone (class in cytoflow.utility.custom_traits) class_name (cytoflowgui.utility.event_tracer.ChangeMessageRecord attribute) clear_estimate() (cytoflowgui.workflow.operations.autofluorescence.AutofluorescenceWorkflowOp method) (cytoflowgui.workflow.operations.bead_calibration.BeadCalibrationWorkflowOp method) (cytoflowgui.workflow.operations.binning.BinningWorkflowOp method) (cytoflowgui.workflow.operations.bleedthrough_linear.BleedthroughLinearWorkflowOp method) (cytoflowgui.workflow.operations.channel_stat.ChannelStatisticWorkflowOp method) (cytoflowgui.workflow.operations.color_translation.ColorTranslationWorkflowOp method) (cytoflowgui.workflow.operations.density.DensityGateWorkflowOp method) (cytoflowgui.workflow.operations.flowclean.FlowCleanWorkflowOp method) (cytoflowgui.workflow.operations.flowpeaks.FlowPeaksWorkflowOp method) (cytoflowgui.workflow.operations.gaussian_1d.GaussianMixture1DWorkflowOp method) (cytoflowgui.workflow.operations.gaussian_2d.GaussianMixture2DWorkflowOp method) (cytoflowgui.workflow.operations.import_op.ImportWorkflowOp method) (cytoflowgui.workflow.operations.kmeans.KMeansWorkflowOp method) (cytoflowgui.workflow.operations.merge_stat.MergeStatisticsWorkflowOp method) (cytoflowgui.workflow.operations.mst.MSTWorkflowSelectionView method) (cytoflowgui.workflow.operations.multi_channel_stat.MultiChannelStatisticWorkflowOp method) (cytoflowgui.workflow.operations.operation_base.IWorkflowOperation method) (cytoflowgui.workflow.operations.operation_base.WorkflowOperation method) (cytoflowgui.workflow.operations.pca.PCAWorkflowOp method) (cytoflowgui.workflow.operations.polygon.PolygonSelectionView method) (cytoflowgui.workflow.operations.quad.QuadSelectionView method) (cytoflowgui.workflow.operations.quad.QuadWorkflowOp method) (cytoflowgui.workflow.operations.range.RangeSelectionView method) (cytoflowgui.workflow.operations.range2d.Range2DSelectionView method) (cytoflowgui.workflow.operations.ratio.RatioWorkflowOp method) (cytoflowgui.workflow.operations.register.RegistrationWorkflowOp method) (cytoflowgui.workflow.operations.som.SOMWorkflowOp method) (cytoflowgui.workflow.operations.tasbe.TasbeWorkflowOp method) (cytoflowgui.workflow.operations.threshold.ThresholdWorkflowOp method) (cytoflowgui.workflow.operations.tsne.tSNEWorkflowOp method) (cytoflowgui.workflow.operations.xform_stat.TransformStatisticWorkflowOp method) clip() (cytoflow.utility.hlog_scale.HlogScale method) (cytoflow.utility.linear_scale.LinearScale method) (cytoflow.utility.log_scale.LogScale method) (cytoflow.utility.logicle_scale.LogicleScale method) (cytoflow.utility.scale.IScale method) clone() (cytoflow.experiment.Experiment method) closable (cytoflowgui.experiment_pane.ExperimentBrowserDockPane attribute) (cytoflowgui.export_task.ExportPane attribute) (cytoflowgui.view_pane.PlotParamsPane attribute) close() (cytoflowgui.editors.vertical_notebook.VerticalNotebook method) (cytoflowgui.import_dialog.ExperimentDialogHandler method) (cytoflowgui.utility.event_tracer.MultiThreadChangeEventRecorder method) closed() (cytoflowgui.import_dialog.ExperimentDialogHandler method) cluster() (in module cytoflow.utility.consensus) cluster_range_ (cytoflow.utility.consensus.ConsensusClustering property) COLOR_TRANSLATION (cytoflowgui.workflow.operations.tasbe.Progress attribute) ColorTextEditor (class in cytoflowgui.editors.color_text_editor) ColorTranslationDiagnostic (class in cytoflow.operations.color_translation) ColorTranslationHandler (class in cytoflowgui.op_plugins.color_translation) ColorTranslationOp (class in cytoflow.operations.color_translation) ColorTranslationPlugin (class in cytoflowgui.op_plugins.color_translation) ColorTranslationViewHandler (class in cytoflowgui.op_plugins.color_translation) ColorTranslationWorkflowOp (class in cytoflowgui.workflow.operations.color_translation) ColorTranslationWorkflowView (class in cytoflowgui.workflow.operations.color_translation) column_facet (cytoflow.views.table.TableView attribute) compute_connectivity_matrix() (in module cytoflow.utility.consensus) compute_consensus_matrix() (in module cytoflow.utility.consensus) compute_identity_matrix() (in module cytoflow.utility.consensus) condition (cytoflow.operations.mst.ConditionSelectionOp attribute) (cytoflow.operations.mst.MSTOp attribute) (cytoflow.utility.logicle_scale.LogicleScale attribute) (cytoflow.utility.scale.IScale attribute) (cytoflowgui.experiment_pane_model.ConditionNode attribute) condition_values (cytoflow.operations.mst.ConditionSelectionOp attribute) (cytoflow.operations.mst.MSTOp attribute) ConditionNode (class in cytoflowgui.experiment_pane_model) conditions (cytoflow.experiment.Experiment attribute) (cytoflow.operations.import_op.ImportOp attribute) (cytoflow.operations.import_op.Tube attribute) (cytoflowgui.editors.subset_list_editor.SubsetListEditor attribute) (cytoflowgui.import_dialog.Tube attribute) (cytoflowgui.op_plugins.hierarchy.HierarchyHandler attribute) (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) (cytoflowgui.workflow_controller.WorkflowItemHandler attribute) conditions_equal() (cytoflow.operations.import_op.Tube method) conditions_hash() (cytoflowgui.import_dialog.Tube method) conditions_names (cytoflowgui.workflow_controller.WorkflowItemHandler attribute) ConditionSelectionOp (class in cytoflow.operations.mst) ConditionsNode (class in cytoflowgui.experiment_pane_model) consensus_cluster (cytoflow.operations.som.SOMOp attribute) consensus_k() (cytoflow.utility.consensus.ConsensusClustering method) ConsensusCluster (class in cytoflow.utility.consensus_cluster) ConsensusClustering (class in cytoflow.utility.consensus) context (cytoflowgui.op_plugins.op_plugin_base.OpHandler attribute) (cytoflowgui.view_plugins.view_plugin_base.ViewHandler attribute) Control (class in cytoflowgui.workflow.operations.color_translation) control_conditions (cytoflow.operations.bleedthrough_linear.BleedthroughLinearOp attribute) (cytoflow.operations.color_translation.ColorTranslationOp attribute) ControlHandler (class in cytoflowgui.op_plugins.color_translation) controller (cytoflowgui.cytoflow_application.CytoflowApplication attribute) controls (cytoflow.operations.bleedthrough_linear.BleedthroughLinearOp attribute) (cytoflow.operations.color_translation.ColorTranslationOp attribute) convert_map_to_euclidean() (cytoflow.utility.minisom.MiniSom method) ConvertingBool (class in cytoflowgui.import_dialog) counter (cytoflowgui.import_dialog.ExperimentDialogModel attribute) cov2corr() (in module cytoflow.utility.util_functions) create() (cytoflowgui.export_task.ExportTaskPane method) (cytoflowgui.flow_task.FlowTaskPane method) create_central_pane() (cytoflowgui.export_task.ExportTask method) (cytoflowgui.flow_task.FlowTask method) create_contents() (cytoflowgui.experiment_pane.ExperimentBrowserDockPane method) (cytoflowgui.export_task.ExportPane method) (cytoflowgui.help_pane.HelpDockPane method) (cytoflowgui.view_pane.PlotParamsPane method) (cytoflowgui.view_pane.ViewDockPane method) (cytoflowgui.workflow_pane.WorkflowDockPane method) create_control() (cytoflowgui.editors.vertical_notebook.VerticalNotebook method) create_dock_panes() (cytoflowgui.export_task.ExportTask method) (cytoflowgui.flow_task.FlowTask method) create_page() (cytoflowgui.editors.vertical_notebook.VerticalNotebook method) current_plot (cytoflowgui.workflow.views.view_base.WorkflowView attribute) current_view (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) custom_editor() (cytoflowgui.editors.instance_handler_editor.InstanceHandlerEditor method) custom_editor_class (cytoflowgui.editors.instance_handler_editor.InstanceHandlerEditor attribute) cytoflow module cytoflow.experiment module cytoflow.operations module cytoflow.operations.autofluorescence module cytoflow.operations.base_op_views module cytoflow.operations.bead_calibration module cytoflow.operations.binning module cytoflow.operations.bleedthrough_linear module cytoflow.operations.category module cytoflow.operations.centroid module cytoflow.operations.channel_stat module cytoflow.operations.color_translation module cytoflow.operations.density module cytoflow.operations.flowclean module cytoflow.operations.flowpeaks module cytoflow.operations.frame_stat module cytoflow.operations.gaussian module cytoflow.operations.hierarchy module cytoflow.operations.i_operation module cytoflow.operations.import_op module cytoflow.operations.kmeans module cytoflow.operations.mst module cytoflow.operations.pca module cytoflow.operations.polygon module cytoflow.operations.quad module cytoflow.operations.range module cytoflow.operations.range2d module cytoflow.operations.ratio module cytoflow.operations.register module cytoflow.operations.som module cytoflow.operations.threshold module cytoflow.operations.tsne module cytoflow.operations.xform_stat module cytoflow.scripts module cytoflow.scripts.channel_voltages module cytoflow.scripts.fcs_metadata module cytoflow.scripts.parse_beads module cytoflow.scripts.split_fcs module cytoflow.utility module cytoflow.utility.algorithms module cytoflow.utility.consensus module cytoflow.utility.consensus_cluster module cytoflow.utility.custom_traits module cytoflow.utility.cytoflow_errors module cytoflow.utility.docstring module cytoflow.utility.fcswrite module cytoflow.utility.hlog_scale module cytoflow.utility.kneed module cytoflow.utility.linear_scale module cytoflow.utility.log_scale module cytoflow.utility.logging_ext module cytoflow.utility.logicle_scale module cytoflow.utility.minisom module cytoflow.utility.scale module cytoflow.utility.util_functions module cytoflow.views module cytoflow.views.bar_chart module cytoflow.views.base_views module

cytoflow.views.densityplot module cytoflow.views.export_fcs module cytoflow.views.histogram module cytoflow.views.histogram_2d module cytoflow.views.i_selectionview module cytoflow.views.i_view module cytoflow.views.kde_1d module cytoflow.views.kde_2d module cytoflow.views.long_table module cytoflow.views.matrix module cytoflow.views.mst module cytoflow.views.parallel_coords module cytoflow.views.radviz module cytoflow.views.scatterplot module cytoflow.views.stats_1d module cytoflow.views.stats_2d module cytoflow.views.table module cytoflow.views.violin module cytoflow_class_repr() (in module cytoflowgui.workflow.serialization) CytoflowApplication (class in cytoflowgui.cytoflow_application) CytoflowError cytoflowgui module cytoflowgui.cytoflow_application module cytoflowgui.editors module cytoflowgui.editors.color_text_editor module cytoflowgui.editors.ext_enum_editor module cytoflowgui.editors.instance_handler_editor module cytoflowgui.editors.range_slider module cytoflowgui.editors.subset_list_editor module cytoflowgui.editors.tab_list_editor module cytoflowgui.editors.toggle_button module cytoflowgui.editors.value_bounds_editor module cytoflowgui.editors.vertical_list_editor module cytoflowgui.editors.vertical_notebook module cytoflowgui.editors.vertical_notebook_editor module cytoflowgui.experiment_pane module cytoflowgui.experiment_pane_model module cytoflowgui.export_task module cytoflowgui.flow_task module cytoflowgui.help_pane module cytoflowgui.import_dialog module cytoflowgui.matplotlib_backend_local module cytoflowgui.matplotlib_backend_remote module cytoflowgui.op_plugins module cytoflowgui.op_plugins.autofluorescence module cytoflowgui.op_plugins.bead_calibration module cytoflowgui.op_plugins.binning module cytoflowgui.op_plugins.bleedthrough_linear module cytoflowgui.op_plugins.category module cytoflowgui.op_plugins.channel_stat module cytoflowgui.op_plugins.color_translation module cytoflowgui.op_plugins.density module cytoflowgui.op_plugins.flowclean module cytoflowgui.op_plugins.flowpeaks module cytoflowgui.op_plugins.gaussian_1d module cytoflowgui.op_plugins.gaussian_2d module cytoflowgui.op_plugins.hierarchy module cytoflowgui.op_plugins.i_op_plugin module cytoflowgui.op_plugins.import_op module cytoflowgui.op_plugins.kmeans module cytoflowgui.op_plugins.merge_stat module cytoflowgui.op_plugins.mst module cytoflowgui.op_plugins.multi_channel_stat module cytoflowgui.op_plugins.op_plugin_base module cytoflowgui.op_plugins.pca module cytoflowgui.op_plugins.polygon module cytoflowgui.op_plugins.quad module cytoflowgui.op_plugins.range module cytoflowgui.op_plugins.range2d module cytoflowgui.op_plugins.ratio module cytoflowgui.op_plugins.register module cytoflowgui.op_plugins.som module cytoflowgui.op_plugins.tasbe module cytoflowgui.op_plugins.threshold module cytoflowgui.op_plugins.tsne module cytoflowgui.op_plugins.xform_stat module cytoflowgui.preferences module cytoflowgui.run module cytoflowgui.subset_controllers module cytoflowgui.util module cytoflowgui.utility module cytoflowgui.utility.event_tracer module cytoflowgui.utility.logging module cytoflowgui.view_pane module cytoflowgui.view_plugins module cytoflowgui.view_plugins.bar_chart module cytoflowgui.view_plugins.density module cytoflowgui.view_plugins.export_fcs module cytoflowgui.view_plugins.histogram module cytoflowgui.view_plugins.histogram_2d module cytoflowgui.view_plugins.i_view_plugin module cytoflowgui.view_plugins.kde_1d module cytoflowgui.view_plugins.kde_2d module cytoflowgui.view_plugins.long_table module cytoflowgui.view_plugins.matrix module cytoflowgui.view_plugins.mst module cytoflowgui.view_plugins.parallel_coords module cytoflowgui.view_plugins.radviz module cytoflowgui.view_plugins.scatterplot module cytoflowgui.view_plugins.stats_1d module cytoflowgui.view_plugins.stats_2d module cytoflowgui.view_plugins.table module cytoflowgui.view_plugins.view_plugin_base module cytoflowgui.view_plugins.violin module cytoflowgui.workflow module cytoflowgui.workflow.operations module cytoflowgui.workflow.operations.autofluorescence module cytoflowgui.workflow.operations.bead_calibration module cytoflowgui.workflow.operations.binning module cytoflowgui.workflow.operations.bleedthrough_linear module cytoflowgui.workflow.operations.category module cytoflowgui.workflow.operations.channel_stat module cytoflowgui.workflow.operations.color_translation module cytoflowgui.workflow.operations.density module cytoflowgui.workflow.operations.flowclean module cytoflowgui.workflow.operations.flowpeaks module cytoflowgui.workflow.operations.gaussian_1d module cytoflowgui.workflow.operations.gaussian_2d module cytoflowgui.workflow.operations.hierarchy module cytoflowgui.workflow.operations.import_op module cytoflowgui.workflow.operations.kmeans module cytoflowgui.workflow.operations.merge_stat module cytoflowgui.workflow.operations.mst module cytoflowgui.workflow.operations.multi_channel_stat module cytoflowgui.workflow.operations.operation_base module cytoflowgui.workflow.operations.pca module cytoflowgui.workflow.operations.polygon module cytoflowgui.workflow.operations.quad module cytoflowgui.workflow.operations.range module cytoflowgui.workflow.operations.range2d module cytoflowgui.workflow.operations.ratio module cytoflowgui.workflow.operations.register module cytoflowgui.workflow.operations.som module cytoflowgui.workflow.operations.tasbe module cytoflowgui.workflow.operations.threshold module cytoflowgui.workflow.operations.tsne module cytoflowgui.workflow.operations.xform_stat module cytoflowgui.workflow.serialization module cytoflowgui.workflow.subset module cytoflowgui.workflow.views module cytoflowgui.workflow.views.bar_chart module cytoflowgui.workflow.views.density module cytoflowgui.workflow.views.export_fcs module cytoflowgui.workflow.views.histogram module cytoflowgui.workflow.views.histogram_2d module cytoflowgui.workflow.views.kde_1d module cytoflowgui.workflow.views.kde_2d module cytoflowgui.workflow.views.long_table module cytoflowgui.workflow.views.matrix module cytoflowgui.workflow.views.mst module cytoflowgui.workflow.views.parallel_coords module cytoflowgui.workflow.views.radviz module cytoflowgui.workflow.views.scatterplot module cytoflowgui.workflow.views.stats_1d module cytoflowgui.workflow.views.stats_2d module cytoflowgui.workflow.views.table module cytoflowgui.workflow.views.view_base module cytoflowgui.workflow.views.violin module cytoflowgui.workflow.workflow module cytoflowgui.workflow.workflow_item module cytoflowgui.workflow_controller module cytoflowgui.workflow_pane module CytoflowOpError CytoflowOpWarning CytoflowPreferences (class in cytoflowgui.preferences) CytoflowPreferencesPane (class in cytoflowgui.preferences) CytoflowViewError CytoflowViewWarning CytoflowWarning

D

data (cytoflow.experiment.Experiment attribute) (cytoflow.utility.scale.IScale attribute) (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute) Data1DPlotParams (class in cytoflowgui.workflow.views.view_base) Data2DPlotParams (class in cytoflowgui.workflow.views.view_base) data_set (cytoflow.operations.import_op.ImportOp attribute) DataPlotParams (class in cytoflowgui.workflow.views.view_base) debug (cytoflowgui.cytoflow_application.CytoflowApplication attribute) default (cytoflow.operations.category.CategoryOp attribute) (cytoflow.operations.hierarchy.HierarchyOp attribute) default_layout (cytoflowgui.cytoflow_application.CytoflowApplication attribute) default_traits_view() (cytoflowgui.export_task.ExportPane method) default_view (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) default_view() (cytoflow.operations.autofluorescence.AutofluorescenceOp method) (cytoflow.operations.bead_calibration.BeadCalibrationOp method) (cytoflow.operations.binning.BinningOp method) (cytoflow.operations.bleedthrough_linear.BleedthroughLinearOp method) (cytoflow.operations.color_translation.ColorTranslationOp method) (cytoflow.operations.density.DensityGateOp method) (cytoflow.operations.flowclean.FlowCleanOp method) (cytoflow.operations.flowpeaks.FlowPeaksOp method) (cytoflow.operations.gaussian.GaussianMixtureOp method) (cytoflow.operations.i_operation.IOperation method) (cytoflow.operations.kmeans.KMeansOp method) (cytoflow.operations.mst.MSTOp method) (cytoflow.operations.polygon.PolygonOp method) (cytoflow.operations.quad.QuadOp method) (cytoflow.operations.range.RangeOp method) (cytoflow.operations.range2d.Range2DOp method) (cytoflow.operations.register.RegistrationOp method) (cytoflow.operations.som.SOMOp method) (cytoflow.operations.threshold.ThresholdOp method) (cytoflowgui.workflow.operations.autofluorescence.AutofluorescenceWorkflowOp method) (cytoflowgui.workflow.operations.bead_calibration.BeadCalibrationWorkflowOp method) (cytoflowgui.workflow.operations.binning.BinningWorkflowOp method) (cytoflowgui.workflow.operations.bleedthrough_linear.BleedthroughLinearWorkflowOp method) (cytoflowgui.workflow.operations.color_translation.ColorTranslationWorkflowOp method) (cytoflowgui.workflow.operations.density.DensityGateWorkflowOp method) (cytoflowgui.workflow.operations.flowclean.FlowCleanWorkflowOp method) (cytoflowgui.workflow.operations.flowpeaks.FlowPeaksWorkflowOp method) (cytoflowgui.workflow.operations.gaussian_1d.GaussianMixture1DWorkflowOp method) (cytoflowgui.workflow.operations.gaussian_2d.GaussianMixture2DWorkflowOp method) (cytoflowgui.workflow.operations.kmeans.KMeansWorkflowOp method) (cytoflowgui.workflow.operations.mst.MSTWorkflowOp method) (cytoflowgui.workflow.operations.polygon.PolygonWorkflowOp method) (cytoflowgui.workflow.operations.quad.QuadWorkflowOp method) (cytoflowgui.workflow.operations.range.RangeWorkflowOp method) (cytoflowgui.workflow.operations.range2d.Range2DWorkflowOp method) (cytoflowgui.workflow.operations.register.RegistrationWorkflowOp method) (cytoflowgui.workflow.operations.som.SOMWorkflowOp method) (cytoflowgui.workflow.operations.tasbe.TasbeWorkflowOp method) (cytoflowgui.workflow.operations.threshold.ThresholdWorkflowOp method)

DefaultFileDialog (class in cytoflowgui.util) deletable (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute) (cytoflowgui.workflow_controller.WorkflowItemHandler attribute) deletable_object (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute) deletable_object_trait (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute) delete (cytoflowgui.editors.vertical_notebook.VerticalNotebook attribute) (cytoflowgui.editors.vertical_notebook_editor.VerticalNotebookEditor attribute) denominator (cytoflow.operations.ratio.RatioOp attribute) density_cutoff (cytoflow.operations.flowclean.FlowCleanOp attribute) DensityGateHandler (class in cytoflowgui.op_plugins.density) DensityGateOp (class in cytoflow.operations.density) DensityGatePlugin (class in cytoflowgui.op_plugins.density) DensityGateView (class in cytoflow.operations.density) DensityGateViewHandler (class in cytoflowgui.op_plugins.density) DensityGateWorkflowOp (class in cytoflowgui.workflow.operations.density) DensityGateWorkflowView (class in cytoflowgui.workflow.operations.density) DensityHandler (class in cytoflowgui.view_plugins.density) DensityParamsHandler (class in cytoflowgui.view_plugins.density) DensityPlotParams (class in cytoflowgui.workflow.views.density) DensityPlugin (class in cytoflowgui.view_plugins.density) DensityPolygonSelectionView (class in cytoflow.operations.polygon) DensityPolygonSelectionWorkflowView (class in cytoflowgui.workflow.operations.polygon) DensityQuadSelectionView (class in cytoflow.operations.quad) DensityRangeSelection2DView (class in cytoflow.operations.range2d) DensityRangeSelection2DWorkflowView (class in cytoflowgui.workflow.operations.range2d) DensityView (class in cytoflow.views.densityplot) DensityWorkflowView (class in cytoflowgui.workflow.views.density) Deprecated (class in cytoflow.utility.custom_traits) description (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute) description_object (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute) description_object_trait (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute) detect_worst_channels_range (cytoflow.operations.flowclean.FlowCleanOp attribute) detect_worst_channels_sd (cytoflow.operations.flowclean.FlowCleanOp attribute) dialog_model (cytoflowgui.op_plugins.import_op.ImportHandler attribute) dispose() (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage method) distance (cytoflow.operations.som.SOMOp attribute) distance_map() (cytoflow.utility.minisom.MiniSom method) distortion_measure() (cytoflow.utility.minisom.MiniSom method) do_estimate (cytoflowgui.workflow.operations.operation_base.IWorkflowOperation attribute) dock_area (cytoflowgui.experiment_pane.ExperimentBrowserDockPane attribute) (cytoflowgui.export_task.ExportPane attribute) (cytoflowgui.view_pane.PlotParamsPane attribute) dont_clean (cytoflow.operations.flowclean.FlowCleanOp attribute) dpi (cytoflowgui.export_task.ExportTask attribute) DPI (cytoflowgui.matplotlib_backend_remote.Msg attribute) DRAW (cytoflowgui.matplotlib_backend_local.Msg attribute) (cytoflowgui.matplotlib_backend_remote.Msg attribute) draw() (cytoflowgui.matplotlib_backend_remote.FigureCanvasAggRemote method) dummy_experiment (cytoflowgui.import_dialog.ExperimentDialogModel attribute)

E

edit_traits() (cytoflowgui.workflow.workflow_item.WorkflowItem method) editor (cytoflowgui.editors.vertical_notebook.VerticalNotebook attribute) elbow (cytoflow.utility.kneed.KneeLocator property) elbow_y (cytoflow.utility.kneed.KneeLocator property) emit() (cytoflowgui.utility.logging.CallbackHandler method) empty_del() (in module cytoflow) enum_conditions_and_files() (cytoflowgui.workflow.views.export_fcs.ExportFCSWorkflowView method) enum_files() (cytoflow.views.export_fcs.ExportFCS method) enum_plots() (cytoflow.operations.base_op_views.ByView method) (cytoflow.operations.flowclean.FlowCleanDiagnostic method) (cytoflow.operations.register.RegistrationDiagnosticView method) (cytoflow.views.bar_chart.BarChartView method) (cytoflow.views.base_views.BaseStatisticsView method) (cytoflow.views.matrix.MatrixView method) (cytoflow.views.mst.MSTView method) (cytoflowgui.workflow.operations.kmeans.KMeansWorkflowView method) (cytoflowgui.workflow.operations.tasbe.TasbeWorkflowView method) (cytoflowgui.workflow.views.view_base.WorkflowByView method) (cytoflowgui.workflow.views.view_base.WorkflowFacetView method) (cytoflowgui.workflow.views.view_base.WorkflowView method) error() (cytoflow.utility.custom_traits.ChangedStr method) error_high (cytoflow.views.bar_chart.BarChartView attribute) (cytoflow.views.base_views.Base1DStatisticsView attribute) (cytoflow.views.stats_1d.Stats1DView attribute) error_low (cytoflow.views.bar_chart.BarChartView attribute) (cytoflow.views.base_views.Base1DStatisticsView attribute) (cytoflow.views.stats_1d.Stats1DView attribute) ESTIMATE (cytoflowgui.workflow.Changed attribute) (cytoflowgui.workflow.workflow.Msg attribute) estimate() (cytoflow.operations.autofluorescence.AutofluorescenceOp method) (cytoflow.operations.bead_calibration.BeadCalibrationOp method) (cytoflow.operations.bleedthrough_linear.BleedthroughLinearOp method) (cytoflow.operations.color_translation.ColorTranslationOp method) (cytoflow.operations.density.DensityGateOp method) (cytoflow.operations.flowclean.FlowCleanOp method) (cytoflow.operations.flowpeaks.FlowPeaksOp method) (cytoflow.operations.gaussian.GaussianMixtureOp method) (cytoflow.operations.i_operation.IOperation method) (cytoflow.operations.kmeans.KMeansOp method) (cytoflow.operations.pca.PCAOp method) (cytoflow.operations.register.RegistrationOp method) (cytoflow.operations.som.SOMOp method) (cytoflow.operations.tsne.tSNEOp method) (cytoflowgui.workflow.operations.autofluorescence.AutofluorescenceWorkflowOp method) (cytoflowgui.workflow.operations.bead_calibration.BeadCalibrationWorkflowOp method) (cytoflowgui.workflow.operations.bleedthrough_linear.BleedthroughLinearWorkflowOp method) (cytoflowgui.workflow.operations.color_translation.ColorTranslationWorkflowOp method) (cytoflowgui.workflow.operations.flowclean.FlowCleanWorkflowOp method) (cytoflowgui.workflow.operations.flowpeaks.FlowPeaksWorkflowOp method) (cytoflowgui.workflow.operations.gaussian_1d.GaussianMixture1DWorkflowOp method) (cytoflowgui.workflow.operations.gaussian_2d.GaussianMixture2DWorkflowOp method) (cytoflowgui.workflow.operations.import_op.ImportWorkflowOp method) (cytoflowgui.workflow.operations.kmeans.KMeansWorkflowOp method) (cytoflowgui.workflow.operations.pca.PCAWorkflowOp method) (cytoflowgui.workflow.operations.register.RegistrationWorkflowOp method) (cytoflowgui.workflow.operations.som.SOMWorkflowOp method) (cytoflowgui.workflow.operations.tasbe.TasbeWorkflowOp method) (cytoflowgui.workflow.operations.tsne.tSNEWorkflowOp method) (cytoflowgui.workflow.workflow_item.WorkflowItem method)

estimate_error (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) ESTIMATE_RESULT (cytoflowgui.workflow.Changed attribute) estimate_warning (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) EVAL (cytoflowgui.workflow.workflow.Msg attribute) eval_bool() (in module cytoflowgui.import_dialog) evaluate() (cytoflowgui.import_dialog.ConvertingBool method) events (cytoflow.operations.import_op.ImportOp attribute) exception (cytoflowgui.utility.event_tracer.ExitMessageRecord attribute) EXEC (cytoflowgui.workflow.workflow.Msg attribute) ExitMessageRecord (class in cytoflowgui.utility.event_tracer) expand_class_attributes() (in module cytoflow.utility.docstring) expand_method_parameters() (in module cytoflow.utility.docstring) Experiment (class in cytoflow.experiment) experiment (cytoflow.utility.logicle_scale.LogicleScale attribute) (cytoflow.utility.scale.IScale attribute) experiment_view() (cytoflowgui.workflow_controller.WorkflowController method) (cytoflowgui.workflow_controller.WorkflowItemHandler method) ExperimentBrowserDockPane (class in cytoflowgui.experiment_pane) ExperimentColumn (class in cytoflowgui.import_dialog) ExperimentDialogHandler (class in cytoflowgui.import_dialog) ExperimentDialogModel (class in cytoflowgui.import_dialog) export (cytoflowgui.view_plugins.export_fcs.ExportFCSHandler attribute) (cytoflowgui.view_plugins.long_table.LongTableHandler attribute) (cytoflowgui.view_plugins.table.TableHandler attribute) export() (cytoflow.views.export_fcs.ExportFCS method) (cytoflow.views.long_table.LongTableView method) (cytoflow.views.table.TableView method) export_pane (cytoflowgui.export_task.ExportTask attribute) ExportFCS (class in cytoflow.views.export_fcs) ExportFCSHandler (class in cytoflowgui.view_plugins.export_fcs) ExportFCSPlugin (class in cytoflowgui.view_plugins.export_fcs) ExportFCSWorkflowView (class in cytoflowgui.workflow.views.export_fcs) ExportFigurePlugin (class in cytoflowgui.export_task) ExportPane (class in cytoflowgui.export_task) ExportTask (class in cytoflowgui.export_task) ExportTaskPane (class in cytoflowgui.export_task) ExtendableEnumEditor (class in cytoflowgui.editors.ext_enum_editor) extra_items (cytoflowgui.editors.ext_enum_editor.ExtendableEnumEditor attribute)

F

facets (cytoflow.operations.base_op_views.ByView attribute) (cytoflow.operations.density.DensityGateView attribute) (cytoflow.operations.flowpeaks.FlowPeaks1DView attribute) (cytoflow.operations.flowpeaks.FlowPeaks2DDensityView attribute) (cytoflow.operations.flowpeaks.FlowPeaks2DView attribute) (cytoflow.operations.gaussian.GaussianMixture1DView attribute) (cytoflow.operations.gaussian.GaussianMixture2DView attribute) (cytoflow.operations.kmeans.KMeans1DView attribute) (cytoflow.operations.kmeans.KMeans2DView attribute) fast_norm() (in module cytoflow.utility.minisom) feature (cytoflow.operations.mst.MSTSelectionView attribute) (cytoflow.operations.xform_stat.TransformStatisticOp attribute) (cytoflow.views.bar_chart.BarChartView attribute) (cytoflow.views.base_views.Base1DStatisticsView attribute) (cytoflow.views.matrix.MatrixView attribute) (cytoflow.views.mst.MSTView attribute) (cytoflow.views.stats_1d.Stats1DView attribute) features (cytoflowgui.op_plugins.xform_stat.TransformStatisticHandler attribute) (cytoflowgui.view_plugins.bar_chart.BarChartHandler attribute) (cytoflowgui.view_plugins.matrix.MatrixHandler attribute) (cytoflowgui.view_plugins.mst.MSTHandler attribute) (cytoflowgui.view_plugins.stats_1d.Stats1DHandler attribute) (cytoflowgui.view_plugins.stats_2d.Stats2DHandler attribute) (cytoflowgui.view_plugins.table.TableHandler attribute) FigureCanvas (in module cytoflowgui.matplotlib_backend_remote) FigureCanvasAggRemote (class in cytoflowgui.matplotlib_backend_remote) FigureCanvasQTAggLocal (class in cytoflowgui.matplotlib_backend_local) file (cytoflow.operations.import_op.Tube attribute) (cytoflowgui.import_dialog.Tube attribute) filename (cytoflowgui.cytoflow_application.CytoflowApplication attribute) (cytoflowgui.flow_task.FlowTask attribute) fill (cytoflow.views.table.TableView attribute) (cytoflowgui.workflow.operations.channel_stat.ChannelStatisticWorkflowOp attribute) (cytoflowgui.workflow.operations.multi_channel_stat.MultiChannelStatisticWorkflowOp attribute) (cytoflowgui.workflow.operations.xform_stat.TransformStatisticWorkflowOp attribute) filter() (cytoflow.utility.logging_ext.MplFilter method) filter_unpicklable() (in module cytoflowgui.workflow.workflow) find_knee() (cytoflow.utility.kneed.KneeLocator method) find_outliers (cytoflow.operations.flowpeaks.FlowPeaksOp attribute) find_section() (in module cytoflow.utility.docstring) fit() (cytoflow.utility.consensus.ConsensusClustering method) (cytoflow.utility.consensus_cluster.ConsensusCluster method)

floatable (cytoflowgui.experiment_pane.ExperimentBrowserDockPane attribute) (cytoflowgui.export_task.ExportPane attribute) (cytoflowgui.view_pane.PlotParamsPane attribute) FloatOrNone (class in cytoflow.utility.custom_traits) FlowCleanDiagnostic (class in cytoflow.operations.flowclean) FlowCleanHandler (class in cytoflowgui.op_plugins.flowclean) FlowCleanOp (class in cytoflow.operations.flowclean) FlowCleanPlugin (class in cytoflowgui.op_plugins.flowclean) FlowCleanViewHandler (class in cytoflowgui.op_plugins.flowclean) FlowCleanWorkflowOp (class in cytoflowgui.workflow.operations.flowclean) FlowCleanWorkflowView (class in cytoflowgui.workflow.operations.flowclean) FlowPeaks1DView (class in cytoflow.operations.flowpeaks) FlowPeaks2DDensityView (class in cytoflow.operations.flowpeaks) FlowPeaks2DView (class in cytoflow.operations.flowpeaks) FlowPeaksHandler (class in cytoflowgui.op_plugins.flowpeaks) FlowPeaksOp (class in cytoflow.operations.flowpeaks) FlowPeaksPlugin (class in cytoflowgui.op_plugins.flowpeaks) FlowPeaksViewHandler (class in cytoflowgui.op_plugins.flowpeaks) FlowPeaksWorkflowOp (class in cytoflowgui.workflow.operations.flowpeaks) FlowPeaksWorkflowView (class in cytoflowgui.workflow.operations.flowpeaks) FlowTask (class in cytoflowgui.flow_task) FlowTaskPane (class in cytoflowgui.flow_task) FlowTaskPlugin (class in cytoflowgui.flow_task) force_clean (cytoflow.operations.flowclean.FlowCleanOp attribute) force_linear (cytoflow.operations.bead_calibration.BeadCalibrationOp attribute) foreground_color (cytoflowgui.editors.color_text_editor.ColorTextEditor attribute) format_value() (cytoflowgui.experiment_pane_model.StringNode method) FrameStatisticOp (class in cytoflow.operations.frame_stat) friend_id (cytoflow.views.histogram_2d.Histogram2DView attribute) friendly_id (cytoflow.operations.i_operation.IOperation attribute) (cytoflow.views.i_view.IView attribute) (cytoflowgui.workflow.operations.flowpeaks.FlowPeaksWorkflowView attribute) (cytoflowgui.workflow.operations.kmeans.KMeansWorkflowView attribute) (cytoflowgui.workflow.operations.tasbe.TasbeWorkflowView attribute) (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) (cytoflowgui.workflow_controller.WorkflowItemHandler attribute) Function (class in cytoflowgui.workflow.operations.multi_channel_stat) function (cytoflow.operations.channel_stat.ChannelStatisticOp attribute) (cytoflow.operations.frame_stat.FrameStatisticOp attribute) (cytoflow.operations.xform_stat.TransformStatisticOp attribute) FunctionHandler (class in cytoflowgui.op_plugins.multi_channel_stat)

G

GateHandler (class in cytoflowgui.op_plugins.hierarchy) gates (cytoflow.operations.hierarchy.HierarchyOp attribute) GaussianMixture1DHandler (class in cytoflowgui.op_plugins.gaussian_1d) GaussianMixture1DPlugin (class in cytoflowgui.op_plugins.gaussian_1d) GaussianMixture1DView (class in cytoflow.operations.gaussian) GaussianMixture1DViewHandler (class in cytoflowgui.op_plugins.gaussian_1d) GaussianMixture1DWorkflowOp (class in cytoflowgui.workflow.operations.gaussian_1d) GaussianMixture1DWorkflowView (class in cytoflowgui.workflow.operations.gaussian_1d) GaussianMixture2DHandler (class in cytoflowgui.op_plugins.gaussian_2d) GaussianMixture2DPlugin (class in cytoflowgui.op_plugins.gaussian_2d) GaussianMixture2DView (class in cytoflow.operations.gaussian) GaussianMixture2DViewHandler (class in cytoflowgui.op_plugins.gaussian_2d) GaussianMixture2DWorkflowOp (class in cytoflowgui.workflow.operations.gaussian_2d) GaussianMixture2DWorkflowView (class in cytoflowgui.workflow.operations.gaussian_2d) GaussianMixtureOp (class in cytoflow.operations.gaussian) geom_mean() (in module cytoflow.utility.util_functions) geom_sd() (in module cytoflow.utility.util_functions) geom_sd_range() (in module cytoflow.utility.util_functions) geom_sem() (in module cytoflow.utility.util_functions) geom_sem_range() (in module cytoflow.utility.util_functions) geomean_95ci() (in module cytoflowgui.workflow.operations.channel_stat) (in module cytoflowgui.workflow.operations.xform_stat) get() (cytoflow.utility.custom_traits.Deprecated method) (cytoflow.utility.custom_traits.Removed method) get_cell_color() (cytoflowgui.import_dialog.ExperimentColumn method) get_change_event_collector() (cytoflowgui.utility.event_tracer.MultiThreadRecordContainer method) get_class_attributes() (in module cytoflow.utility.docstring) get_default_scale() (in module cytoflow.utility.scale) get_default_value() (cytoflow.utility.custom_traits.ScaleEnum method) get_euclidean_coordinates() (cytoflow.utility.minisom.MiniSom method) get_handler() (cytoflowgui.op_plugins.autofluorescence.AutofluorescencePlugin method) (cytoflowgui.op_plugins.bead_calibration.BeadCalibrationPlugin method) (cytoflowgui.op_plugins.binning.BinningPlugin method) (cytoflowgui.op_plugins.bleedthrough_linear.BleedthroughLinearPlugin method) (cytoflowgui.op_plugins.category.CategoryPlugin method) (cytoflowgui.op_plugins.channel_stat.ChannelStatisticPlugin method) (cytoflowgui.op_plugins.color_translation.ColorTranslationPlugin method) (cytoflowgui.op_plugins.density.DensityGatePlugin method) (cytoflowgui.op_plugins.flowclean.FlowCleanPlugin method) (cytoflowgui.op_plugins.flowpeaks.FlowPeaksPlugin method) (cytoflowgui.op_plugins.gaussian_1d.GaussianMixture1DPlugin method) (cytoflowgui.op_plugins.gaussian_2d.GaussianMixture2DPlugin method) (cytoflowgui.op_plugins.hierarchy.HierarchyPlugin method) (cytoflowgui.op_plugins.i_op_plugin.IOperationPlugin method) (cytoflowgui.op_plugins.import_op.ImportPlugin method) (cytoflowgui.op_plugins.kmeans.KMeansPlugin method) (cytoflowgui.op_plugins.merge_stat.MergeStatisticsPlugin method) (cytoflowgui.op_plugins.mst.MSTPlugin method) (cytoflowgui.op_plugins.multi_channel_stat.MultiChannelStatisticPlugin method) (cytoflowgui.op_plugins.pca.PCAPlugin method) (cytoflowgui.op_plugins.polygon.PolygonPlugin method) (cytoflowgui.op_plugins.quad.QuadPlugin method) (cytoflowgui.op_plugins.range.RangePlugin method) (cytoflowgui.op_plugins.range2d.Range2DPlugin method) (cytoflowgui.op_plugins.ratio.RatioPlugin method) (cytoflowgui.op_plugins.register.RegistrationPlugin method) (cytoflowgui.op_plugins.som.SOMPlugin method) (cytoflowgui.op_plugins.tasbe.TasbePlugin method) (cytoflowgui.op_plugins.threshold.ThresholdPlugin method) (cytoflowgui.op_plugins.tsne.tSNEPlugin method) (cytoflowgui.op_plugins.xform_stat.TransformStatisticPlugin method) (cytoflowgui.view_plugins.bar_chart.BarChartPlugin method) (cytoflowgui.view_plugins.density.DensityPlugin method) (cytoflowgui.view_plugins.export_fcs.ExportFCSPlugin method) (cytoflowgui.view_plugins.histogram.HistogramPlugin method) (cytoflowgui.view_plugins.histogram_2d.Histogram2DPlugin method) (cytoflowgui.view_plugins.i_view_plugin.IViewPlugin method) (cytoflowgui.view_plugins.kde_1d.Kde1DPlugin method) (cytoflowgui.view_plugins.kde_2d.Kde2DPlugin method) (cytoflowgui.view_plugins.long_table.LongTablePlugin method) (cytoflowgui.view_plugins.matrix.MatrixPlugin method) (cytoflowgui.view_plugins.mst.MSTPlugin method) (cytoflowgui.view_plugins.parallel_coords.ParallelCoordinatesPlugin method) (cytoflowgui.view_plugins.radviz.RadvizPlugin method) (cytoflowgui.view_plugins.scatterplot.ScatterplotPlugin method) (cytoflowgui.view_plugins.stats_1d.Stats1DPlugin method) (cytoflowgui.view_plugins.stats_2d.Stats2DPlugin method) (cytoflowgui.view_plugins.table.TablePlugin method) (cytoflowgui.view_plugins.violin.ViolinPlotPlugin method) get_help() (cytoflowgui.op_plugins.i_op_plugin.IOperationPlugin method) (cytoflowgui.op_plugins.op_plugin_base.PluginHelpMixin method) (cytoflowgui.view_plugins.i_view_plugin.IViewPlugin method) (cytoflowgui.view_plugins.view_plugin_base.PluginHelpMixin method) get_icon() (cytoflowgui.op_plugins.autofluorescence.AutofluorescencePlugin method) (cytoflowgui.op_plugins.bead_calibration.BeadCalibrationPlugin method) (cytoflowgui.op_plugins.binning.BinningPlugin method) (cytoflowgui.op_plugins.bleedthrough_linear.BleedthroughLinearPlugin method) (cytoflowgui.op_plugins.category.CategoryPlugin method) (cytoflowgui.op_plugins.channel_stat.ChannelStatisticPlugin method) (cytoflowgui.op_plugins.color_translation.ColorTranslationPlugin method) (cytoflowgui.op_plugins.density.DensityGatePlugin method) (cytoflowgui.op_plugins.flowclean.FlowCleanPlugin method) (cytoflowgui.op_plugins.flowpeaks.FlowPeaksPlugin method) (cytoflowgui.op_plugins.gaussian_1d.GaussianMixture1DPlugin method) (cytoflowgui.op_plugins.gaussian_2d.GaussianMixture2DPlugin method) (cytoflowgui.op_plugins.hierarchy.HierarchyPlugin method) (cytoflowgui.op_plugins.i_op_plugin.IOperationPlugin method) (cytoflowgui.op_plugins.import_op.ImportPlugin method) (cytoflowgui.op_plugins.kmeans.KMeansPlugin method) (cytoflowgui.op_plugins.merge_stat.MergeStatisticsPlugin method) (cytoflowgui.op_plugins.mst.MSTPlugin method) (cytoflowgui.op_plugins.multi_channel_stat.MultiChannelStatisticPlugin method) (cytoflowgui.op_plugins.pca.PCAPlugin method) (cytoflowgui.op_plugins.polygon.PolygonPlugin method) (cytoflowgui.op_plugins.quad.QuadPlugin method) (cytoflowgui.op_plugins.range.RangePlugin method) (cytoflowgui.op_plugins.range2d.Range2DPlugin method) (cytoflowgui.op_plugins.ratio.RatioPlugin method) (cytoflowgui.op_plugins.register.RegistrationPlugin method) (cytoflowgui.op_plugins.som.SOMPlugin method) (cytoflowgui.op_plugins.tasbe.TasbePlugin method) (cytoflowgui.op_plugins.threshold.ThresholdPlugin method) (cytoflowgui.op_plugins.tsne.tSNEPlugin method) (cytoflowgui.op_plugins.xform_stat.TransformStatisticPlugin method) (cytoflowgui.view_plugins.bar_chart.BarChartPlugin method) (cytoflowgui.view_plugins.density.DensityPlugin method) (cytoflowgui.view_plugins.export_fcs.ExportFCSPlugin method) (cytoflowgui.view_plugins.histogram.HistogramPlugin method) (cytoflowgui.view_plugins.histogram_2d.Histogram2DPlugin method) (cytoflowgui.view_plugins.i_view_plugin.IViewPlugin method) (cytoflowgui.view_plugins.kde_1d.Kde1DPlugin method) (cytoflowgui.view_plugins.kde_2d.Kde2DPlugin method) (cytoflowgui.view_plugins.long_table.LongTablePlugin method) (cytoflowgui.view_plugins.matrix.MatrixPlugin method) (cytoflowgui.view_plugins.mst.MSTPlugin method) (cytoflowgui.view_plugins.parallel_coords.ParallelCoordinatesPlugin method) (cytoflowgui.view_plugins.radviz.RadvizPlugin method) (cytoflowgui.view_plugins.scatterplot.ScatterplotPlugin method) (cytoflowgui.view_plugins.stats_1d.Stats1DPlugin method) (cytoflowgui.view_plugins.stats_2d.Stats2DPlugin method) (cytoflowgui.view_plugins.table.TablePlugin method) (cytoflowgui.view_plugins.violin.ViolinPlotPlugin method)

get_method_parameters() (in module cytoflow.utility.docstring) get_mpl_params() (cytoflow.utility.hlog_scale.HlogScale method) (cytoflow.utility.linear_scale.LinearScale method) (cytoflow.utility.log_scale.LogScale method) (cytoflow.utility.logicle_scale.LogicleScale method) get_notebook_code() (cytoflowgui.workflow.operations.autofluorescence.AutofluorescenceWorkflowOp method) (cytoflowgui.workflow.operations.autofluorescence.AutofluorescenceWorkflowView method) (cytoflowgui.workflow.operations.bead_calibration.BeadCalibrationWorkflowOp method) (cytoflowgui.workflow.operations.bead_calibration.BeadCalibrationWorkflowView method) (cytoflowgui.workflow.operations.binning.BinningWorkflowOp method) (cytoflowgui.workflow.operations.binning.BinningWorkflowView method) (cytoflowgui.workflow.operations.bleedthrough_linear.BleedthroughLinearWorkflowOp method) (cytoflowgui.workflow.operations.bleedthrough_linear.BleedthroughLinearWorkflowView method) (cytoflowgui.workflow.operations.category.CategoryWorkflowOp method) (cytoflowgui.workflow.operations.channel_stat.ChannelStatisticWorkflowOp method) (cytoflowgui.workflow.operations.color_translation.ColorTranslationWorkflowOp method) (cytoflowgui.workflow.operations.color_translation.ColorTranslationWorkflowView method) (cytoflowgui.workflow.operations.density.DensityGateWorkflowOp method) (cytoflowgui.workflow.operations.density.DensityGateWorkflowView method) (cytoflowgui.workflow.operations.flowclean.FlowCleanWorkflowOp method) (cytoflowgui.workflow.operations.flowclean.FlowCleanWorkflowView method) (cytoflowgui.workflow.operations.flowpeaks.FlowPeaksWorkflowOp method) (cytoflowgui.workflow.operations.flowpeaks.FlowPeaksWorkflowView method) (cytoflowgui.workflow.operations.gaussian_1d.GaussianMixture1DWorkflowOp method) (cytoflowgui.workflow.operations.gaussian_1d.GaussianMixture1DWorkflowView method) (cytoflowgui.workflow.operations.gaussian_2d.GaussianMixture2DWorkflowOp method) (cytoflowgui.workflow.operations.gaussian_2d.GaussianMixture2DWorkflowView method) (cytoflowgui.workflow.operations.hierarchy.HierarchyWorkflowOp method) (cytoflowgui.workflow.operations.import_op.ImportWorkflowOp method) (cytoflowgui.workflow.operations.kmeans.KMeansWorkflowOp method) (cytoflowgui.workflow.operations.kmeans.KMeansWorkflowView method) (cytoflowgui.workflow.operations.merge_stat.MergeStatisticsWorkflowOp method) (cytoflowgui.workflow.operations.mst.MSTWorkflowOp method) (cytoflowgui.workflow.operations.mst.MSTWorkflowSelectionView method) (cytoflowgui.workflow.operations.multi_channel_stat.MultiChannelStatisticWorkflowOp method) (cytoflowgui.workflow.operations.operation_base.IWorkflowOperation method) (cytoflowgui.workflow.operations.operation_base.WorkflowOperation method) (cytoflowgui.workflow.operations.pca.PCAWorkflowOp method) (cytoflowgui.workflow.operations.polygon.PolygonSelectionView method) (cytoflowgui.workflow.operations.polygon.PolygonWorkflowOp method) (cytoflowgui.workflow.operations.quad.QuadSelectionView method) (cytoflowgui.workflow.operations.quad.QuadWorkflowOp method) (cytoflowgui.workflow.operations.range.RangeSelectionView method) (cytoflowgui.workflow.operations.range.RangeWorkflowOp method) (cytoflowgui.workflow.operations.range2d.Range2DSelectionView method) (cytoflowgui.workflow.operations.range2d.Range2DWorkflowOp method) (cytoflowgui.workflow.operations.ratio.RatioWorkflowOp method) (cytoflowgui.workflow.operations.register.RegistrationDiagnosticWorkflowView method) (cytoflowgui.workflow.operations.register.RegistrationWorkflowOp method) (cytoflowgui.workflow.operations.som.SOMWorkflowOp method) (cytoflowgui.workflow.operations.som.SOMWorkflowView method) (cytoflowgui.workflow.operations.tasbe.TasbeWorkflowOp method) (cytoflowgui.workflow.operations.tasbe.TasbeWorkflowView method) (cytoflowgui.workflow.operations.threshold.ThresholdSelectionView method) (cytoflowgui.workflow.operations.threshold.ThresholdWorkflowOp method) (cytoflowgui.workflow.operations.tsne.tSNEWorkflowOp method) (cytoflowgui.workflow.operations.xform_stat.TransformStatisticWorkflowOp method) (cytoflowgui.workflow.views.bar_chart.BarChartWorkflowView method) (cytoflowgui.workflow.views.density.DensityWorkflowView method) (cytoflowgui.workflow.views.export_fcs.ExportFCSWorkflowView method) (cytoflowgui.workflow.views.histogram.HistogramWorkflowView method) (cytoflowgui.workflow.views.histogram_2d.Histogram2DWorkflowView method) (cytoflowgui.workflow.views.kde_1d.Kde1DWorkflowView method) (cytoflowgui.workflow.views.kde_2d.Kde2DWorkflowView method) (cytoflowgui.workflow.views.long_table.LongTableWorkflowView method) (cytoflowgui.workflow.views.matrix.MatrixWorkflowView method) (cytoflowgui.workflow.views.mst.MSTWorkflowView method) (cytoflowgui.workflow.views.parallel_coords.ParallelCoordinatesWorkflowView method) (cytoflowgui.workflow.views.radviz.RadvizWorkflowView method) (cytoflowgui.workflow.views.scatterplot.ScatterplotWorkflowView method) (cytoflowgui.workflow.views.stats_1d.Stats1DWorkflowView method) (cytoflowgui.workflow.views.stats_2d.Stats2DWorkflowView method) (cytoflowgui.workflow.views.table.TableWorkflowView method) (cytoflowgui.workflow.views.view_base.IWorkflowView method) (cytoflowgui.workflow.views.view_base.WorkflowView method) (cytoflowgui.workflow.views.violin.ViolinPlotWorkflowView method) get_operation() (cytoflowgui.op_plugins.autofluorescence.AutofluorescencePlugin method) (cytoflowgui.op_plugins.bead_calibration.BeadCalibrationPlugin method) (cytoflowgui.op_plugins.binning.BinningPlugin method) (cytoflowgui.op_plugins.bleedthrough_linear.BleedthroughLinearPlugin method) (cytoflowgui.op_plugins.category.CategoryPlugin method) (cytoflowgui.op_plugins.channel_stat.ChannelStatisticPlugin method) (cytoflowgui.op_plugins.color_translation.ColorTranslationPlugin method) (cytoflowgui.op_plugins.density.DensityGatePlugin method) (cytoflowgui.op_plugins.flowclean.FlowCleanPlugin method) (cytoflowgui.op_plugins.flowpeaks.FlowPeaksPlugin method) (cytoflowgui.op_plugins.gaussian_1d.GaussianMixture1DPlugin method) (cytoflowgui.op_plugins.gaussian_2d.GaussianMixture2DPlugin method) (cytoflowgui.op_plugins.hierarchy.HierarchyPlugin method) (cytoflowgui.op_plugins.i_op_plugin.IOperationPlugin method) (cytoflowgui.op_plugins.import_op.ImportPlugin method) (cytoflowgui.op_plugins.kmeans.KMeansPlugin method) (cytoflowgui.op_plugins.merge_stat.MergeStatisticsPlugin method) (cytoflowgui.op_plugins.mst.MSTPlugin method) (cytoflowgui.op_plugins.multi_channel_stat.MultiChannelStatisticPlugin method) (cytoflowgui.op_plugins.pca.PCAPlugin method) (cytoflowgui.op_plugins.polygon.PolygonPlugin method) (cytoflowgui.op_plugins.quad.QuadPlugin method) (cytoflowgui.op_plugins.range.RangePlugin method) (cytoflowgui.op_plugins.range2d.Range2DPlugin method) (cytoflowgui.op_plugins.ratio.RatioPlugin method) (cytoflowgui.op_plugins.register.RegistrationPlugin method) (cytoflowgui.op_plugins.som.SOMPlugin method) (cytoflowgui.op_plugins.tasbe.TasbePlugin method) (cytoflowgui.op_plugins.threshold.ThresholdPlugin method) (cytoflowgui.op_plugins.tsne.tSNEPlugin method) (cytoflowgui.op_plugins.xform_stat.TransformStatisticPlugin method) get_plugin() (cytoflowgui.view_plugins.i_view_plugin.IViewPlugin method) get_transform() (cytoflow.utility.hlog_scale.MatplotlibHlogScale method) (cytoflow.utility.logicle_scale.MatplotlibLogicleScale method) get_view() (cytoflowgui.view_plugins.bar_chart.BarChartPlugin method) (cytoflowgui.view_plugins.density.DensityPlugin method) (cytoflowgui.view_plugins.export_fcs.ExportFCSPlugin method) (cytoflowgui.view_plugins.histogram.HistogramPlugin method) (cytoflowgui.view_plugins.histogram_2d.Histogram2DPlugin method) (cytoflowgui.view_plugins.i_view_plugin.IViewPlugin method) (cytoflowgui.view_plugins.kde_1d.Kde1DPlugin method) (cytoflowgui.view_plugins.kde_2d.Kde2DPlugin method) (cytoflowgui.view_plugins.long_table.LongTablePlugin method) (cytoflowgui.view_plugins.matrix.MatrixPlugin method) (cytoflowgui.view_plugins.mst.MSTPlugin method) (cytoflowgui.view_plugins.parallel_coords.ParallelCoordinatesPlugin method) (cytoflowgui.view_plugins.radviz.RadvizPlugin method) (cytoflowgui.view_plugins.scatterplot.ScatterplotPlugin method) (cytoflowgui.view_plugins.stats_1d.Stats1DPlugin method) (cytoflowgui.view_plugins.stats_2d.Stats2DPlugin method) (cytoflowgui.view_plugins.table.TablePlugin method) (cytoflowgui.view_plugins.violin.ViolinPlotPlugin method) get_weights() (cytoflow.utility.minisom.MiniSom method) gridsize (cytoflow.operations.register.RegistrationOp attribute) gui_handler_callback() (in module cytoflowgui.cytoflow_application)

H

h (cytoflow.operations.flowpeaks.FlowPeaksOp attribute) h0 (cytoflow.operations.flowpeaks.FlowPeaksOp attribute) handler (cytoflowgui.experiment_pane.ExperimentBrowserDockPane attribute) (cytoflowgui.export_task.ExportTask attribute) (cytoflowgui.export_task.ExportTaskPane attribute) (cytoflowgui.flow_task.FlowTask attribute) (cytoflowgui.flow_task.FlowTaskPane attribute) (cytoflowgui.utility.event_tracer.CallingMessageRecord attribute) (cytoflowgui.utility.event_tracer.ExitMessageRecord attribute) (cytoflowgui.view_pane.PlotParamsPane attribute) (cytoflowgui.view_pane.ViewDockPane attribute) (cytoflowgui.workflow_pane.WorkflowDockPane attribute) handler_factory (cytoflowgui.editors.instance_handler_editor.InstanceHandlerEditor attribute) (cytoflowgui.editors.vertical_notebook_editor.VerticalNotebookEditor attribute) handler_factory() (cytoflowgui.workflow_controller.WorkflowController method) has_inverse (cytoflow.utility.hlog_scale.MatplotlibHlogScale.HlogTransform attribute) (cytoflow.utility.hlog_scale.MatplotlibHlogScale.InvertedLogicleTransform attribute) (cytoflow.utility.logicle_scale.MatplotlibLogicleScale.InvertedLogicleTransform attribute) (cytoflow.utility.logicle_scale.MatplotlibLogicleScale.LogicleTransform attribute) height (cytoflow.operations.som.SOMOp attribute) (cytoflowgui.export_task.ExportTask attribute) help_id (cytoflowgui.help_pane.HelpDockPane attribute) help_pane (cytoflowgui.flow_task.FlowTask attribute) HelpDockPane (class in cytoflowgui.help_pane) HierarchyGate (class in cytoflowgui.workflow.operations.hierarchy) HierarchyHandler (class in cytoflowgui.op_plugins.hierarchy) HierarchyOp (class in cytoflow.operations.hierarchy) HierarchyPlugin (class in cytoflowgui.op_plugins.hierarchy) HierarchyWorkflowOp (class in cytoflowgui.workflow.operations.hierarchy) high (cytoflow.operations.range.RangeOp attribute) high() (cytoflowgui.editors.range_slider.RangeSlider method) hint_height (cytoflowgui.util.HintedMainWindow attribute) (cytoflowgui.util.HintedWidget attribute) hint_width (cytoflowgui.util.HintedMainWindow attribute) (cytoflowgui.util.HintedWidget attribute) HintedMainWindow (class in cytoflowgui.util) HintedWidget (class in cytoflowgui.util) hist() (cytoflow.utility.consensus.ConsensusClustering method) Histogram2DHandler (class in cytoflowgui.view_plugins.histogram_2d) Histogram2DParamsHandler (class in cytoflowgui.view_plugins.histogram_2d) Histogram2DPlotParams (class in cytoflowgui.workflow.views.histogram_2d) Histogram2DPlugin (class in cytoflowgui.view_plugins.histogram_2d) Histogram2DView (class in cytoflow.views.histogram_2d) Histogram2DWorkflowView (class in cytoflowgui.workflow.views.histogram_2d) HistogramHandler (class in cytoflowgui.view_plugins.histogram) HistogramParamsHandler (class in cytoflowgui.view_plugins.histogram) HistogramPlotParams (class in cytoflowgui.workflow.views.histogram) HistogramPlugin (class in cytoflowgui.view_plugins.histogram) HistogramView (class in cytoflow.views.histogram) HistogramWorkflowView (class in cytoflowgui.workflow.views.histogram) history (cytoflow.experiment.Experiment attribute) hlog() (in module cytoflow.utility.hlog_scale) hlog_inv() (in module cytoflow.utility.hlog_scale) HlogMajorLocator (class in cytoflow.utility.hlog_scale) HlogMinorLocator (class in cytoflow.utility.hlog_scale) HlogScale (class in cytoflow.utility.hlog_scale) html (cytoflowgui.help_pane.HelpDockPane attribute) huechannel (cytoflow.operations.flowpeaks.FlowPeaks2DView attribute) (cytoflow.operations.gaussian.GaussianMixture2DView attribute) (cytoflow.operations.kmeans.KMeans2DView attribute) (cytoflow.operations.polygon.ScatterplotPolygonSelectionView attribute) (cytoflow.operations.quad.ScatterplotQuadSelectionView attribute) (cytoflow.operations.range2d.ScatterplotRangeSelection2DView attribute) (cytoflow.views.scatterplot.ScatterplotView attribute)

huefacet (cytoflow.operations.binning.BinningView attribute) (cytoflow.operations.density.DensityGateView attribute) (cytoflow.operations.flowpeaks.FlowPeaks1DView attribute) (cytoflow.operations.flowpeaks.FlowPeaks2DDensityView attribute) (cytoflow.operations.flowpeaks.FlowPeaks2DView attribute) (cytoflow.operations.gaussian.GaussianMixture1DView attribute) (cytoflow.operations.gaussian.GaussianMixture2DView attribute) (cytoflow.operations.kmeans.KMeans1DView attribute) (cytoflow.operations.kmeans.KMeans2DView attribute) (cytoflow.operations.polygon.DensityPolygonSelectionView attribute) (cytoflow.operations.polygon.ScatterplotPolygonSelectionView attribute) (cytoflow.operations.quad.DensityQuadSelectionView attribute) (cytoflow.operations.quad.ScatterplotQuadSelectionView attribute) (cytoflow.operations.range.RangeSelection attribute) (cytoflow.operations.range2d.DensityRangeSelection2DView attribute) (cytoflow.operations.range2d.ScatterplotRangeSelection2DView attribute) (cytoflow.operations.threshold.ThresholdSelection attribute) (cytoflow.views.bar_chart.BarChartView attribute) (cytoflow.views.base_views.BaseStatisticsView attribute) (cytoflow.views.base_views.BaseView attribute) (cytoflow.views.densityplot.DensityView attribute) (cytoflow.views.histogram.HistogramView attribute) (cytoflow.views.histogram_2d.Histogram2DView attribute) (cytoflow.views.kde_1d.Kde1DView attribute) (cytoflow.views.kde_2d.Kde2DView attribute) (cytoflow.views.parallel_coords.ParallelCoordinatesView attribute) (cytoflow.views.radviz.RadvizView attribute) (cytoflow.views.scatterplot.ScatterplotView attribute) (cytoflow.views.stats_1d.Stats1DView attribute) (cytoflow.views.stats_2d.Stats2DView attribute) (cytoflow.views.violin.ViolinPlotView attribute) huescale (cytoflow.operations.binning.BinningView attribute) (cytoflow.operations.density.DensityGateView attribute) (cytoflow.operations.flowpeaks.FlowPeaks1DView attribute) (cytoflow.operations.flowpeaks.FlowPeaks2DDensityView attribute) (cytoflow.operations.flowpeaks.FlowPeaks2DView attribute) (cytoflow.operations.gaussian.GaussianMixture1DView attribute) (cytoflow.operations.gaussian.GaussianMixture2DView attribute) (cytoflow.operations.kmeans.KMeans1DView attribute) (cytoflow.operations.kmeans.KMeans2DView attribute) (cytoflow.operations.polygon.DensityPolygonSelectionView attribute) (cytoflow.operations.polygon.ScatterplotPolygonSelectionView attribute) (cytoflow.operations.quad.DensityQuadSelectionView attribute) (cytoflow.operations.quad.ScatterplotQuadSelectionView attribute) (cytoflow.operations.range.RangeSelection attribute) (cytoflow.operations.range2d.DensityRangeSelection2DView attribute) (cytoflow.operations.range2d.ScatterplotRangeSelection2DView attribute) (cytoflow.operations.threshold.ThresholdSelection attribute) (cytoflow.views.bar_chart.BarChartView attribute) (cytoflow.views.base_views.BaseView attribute) (cytoflow.views.densityplot.DensityView attribute) (cytoflow.views.histogram.HistogramView attribute) (cytoflow.views.histogram_2d.Histogram2DView attribute) (cytoflow.views.kde_1d.Kde1DView attribute) (cytoflow.views.kde_2d.Kde2DView attribute) (cytoflow.views.parallel_coords.ParallelCoordinatesView attribute) (cytoflow.views.radviz.RadvizView attribute) (cytoflow.views.scatterplot.ScatterplotView attribute) (cytoflow.views.stats_1d.Stats1DView attribute) (cytoflow.views.stats_2d.Stats2DView attribute) (cytoflow.views.violin.ViolinPlotView attribute)

I

icon (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute) (cytoflowgui.workflow_controller.WorkflowItemHandler attribute) icon_object (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute) icon_object_trait (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute) id (cytoflow.operations.i_operation.IOperation attribute) (cytoflow.views.histogram_2d.Histogram2DView attribute) (cytoflow.views.i_view.IView attribute) (cytoflowgui.cytoflow_application.CytoflowApplication attribute) (cytoflowgui.experiment_pane.ExperimentBrowserDockPane attribute) (cytoflowgui.export_task.ExportPane attribute) (cytoflowgui.export_task.ExportTaskPane attribute) (cytoflowgui.flow_task.FlowTask attribute) (cytoflowgui.flow_task.FlowTaskPane attribute) (cytoflowgui.help_pane.HelpDockPane attribute) (cytoflowgui.op_plugins.i_op_plugin.IOperationPlugin attribute) (cytoflowgui.view_pane.PlotParamsPane attribute) (cytoflowgui.view_pane.ViewDockPane attribute) (cytoflowgui.view_plugins.i_view_plugin.IViewPlugin attribute) (cytoflowgui.workflow.operations.flowpeaks.FlowPeaksWorkflowView attribute) (cytoflowgui.workflow.operations.kmeans.KMeansWorkflowView attribute) (cytoflowgui.workflow.operations.tasbe.TasbeWorkflowView attribute) (cytoflowgui.workflow_pane.WorkflowDockPane attribute) ignore_incomplete_groups (cytoflow.operations.xform_stat.TransformStatisticOp attribute) ignore_v (cytoflow.operations.import_op.ImportOp attribute) import_csv (cytoflowgui.import_dialog.ExperimentDialogHandler attribute) import_op (cytoflowgui.import_dialog.ExperimentDialogHandler attribute) ImportHandler (class in cytoflowgui.op_plugins.import_op) ImportOp (class in cytoflow.operations.import_op) ImportPlugin (class in cytoflowgui.op_plugins.import_op) ImportWorkflowOp (class in cytoflowgui.workflow.operations.import_op) indent (cytoflowgui.utility.event_tracer.CallingMessageRecord attribute) (cytoflowgui.utility.event_tracer.ChangeMessageRecord attribute) (cytoflowgui.utility.event_tracer.ExitMessageRecord attribute) index (cytoflowgui.import_dialog.Tube attribute) indices (cytoflowgui.op_plugins.xform_stat.TransformStatisticHandler attribute) (cytoflowgui.view_plugins.bar_chart.BarChartHandler attribute) (cytoflowgui.view_plugins.matrix.MatrixHandler attribute) (cytoflowgui.view_plugins.mst.MSTHandler attribute) (cytoflowgui.view_plugins.stats_1d.Stats1DHandler attribute) (cytoflowgui.view_plugins.stats_2d.Stats2DHandler attribute) (cytoflowgui.view_plugins.table.TableHandler attribute) info_text (cytoflow.utility.custom_traits.CFloatOrNone attribute) (cytoflow.utility.custom_traits.CIntOrNone attribute) (cytoflow.utility.custom_traits.FloatOrNone attribute) (cytoflow.utility.custom_traits.IntOrNone attribute) (cytoflow.utility.custom_traits.PositiveCFloat attribute) (cytoflow.utility.custom_traits.PositiveCInt attribute) (cytoflow.utility.custom_traits.PositiveFloat attribute) (cytoflow.utility.custom_traits.PositiveInt attribute) (cytoflow.utility.custom_traits.ScaleEnum attribute) (cytoflowgui.workflow.operations.import_op.ValidPythonIdentifier attribute)

init() (cytoflowgui.import_dialog.ExperimentDialogHandler method) (cytoflowgui.import_dialog.ExperimentDialogModel method) initialized() (cytoflowgui.flow_task.FlowTask method) input_dims (cytoflow.utility.hlog_scale.MatplotlibHlogScale.HlogTransform attribute) (cytoflow.utility.hlog_scale.MatplotlibHlogScale.InvertedLogicleTransform attribute) (cytoflow.utility.logicle_scale.MatplotlibLogicleScale.InvertedLogicleTransform attribute) (cytoflow.utility.logicle_scale.MatplotlibLogicleScale.LogicleTransform attribute) InstanceHandlerEditor (class in cytoflowgui.editors.instance_handler_editor) interactive (cytoflow.operations.polygon.DensityPolygonSelectionView attribute) (cytoflow.operations.polygon.ScatterplotPolygonSelectionView attribute) (cytoflow.operations.quad.DensityQuadSelectionView attribute) (cytoflow.operations.quad.ScatterplotQuadSelectionView attribute) (cytoflow.operations.range.RangeSelection attribute) (cytoflow.operations.range2d.DensityRangeSelection2DView attribute) (cytoflow.operations.range2d.ScatterplotRangeSelection2DView attribute) (cytoflow.operations.threshold.ThresholdSelection attribute) (cytoflow.views.i_selectionview.ISelectionView attribute) IntOrNone (class in cytoflow.utility.custom_traits) inverse() (cytoflow.utility.hlog_scale.HlogScale method) (cytoflow.utility.linear_scale.LinearScale method) (cytoflow.utility.log_scale.LogScale method) (cytoflow.utility.logicle_scale.LogicleScale method) (cytoflow.utility.scale.IScale method) inverted() (cytoflow.utility.hlog_scale.MatplotlibHlogScale.HlogTransform method) (cytoflow.utility.hlog_scale.MatplotlibHlogScale.InvertedLogicleTransform method) (cytoflow.utility.logicle_scale.MatplotlibLogicleScale.InvertedLogicleTransform method) (cytoflow.utility.logicle_scale.MatplotlibLogicleScale.LogicleTransform method) IOperation (class in cytoflow.operations.i_operation) IOperationPlugin (class in cytoflowgui.op_plugins.i_op_plugin) iqr() (in module cytoflow.utility.util_functions) is_inside_sm() (in module cytoflow.utility.algorithms) is_numeric() (in module cytoflow.utility.util_functions) is_open (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute) is_separable (cytoflow.utility.hlog_scale.MatplotlibHlogScale.HlogTransform attribute) (cytoflow.utility.hlog_scale.MatplotlibHlogScale.InvertedLogicleTransform attribute) (cytoflow.utility.logicle_scale.MatplotlibLogicleScale.InvertedLogicleTransform attribute) (cytoflow.utility.logicle_scale.MatplotlibLogicleScale.LogicleTransform attribute) is_tube_unique() (cytoflowgui.import_dialog.ExperimentDialogModel method) IScale (class in cytoflow.utility.scale) ISelectionView (class in cytoflow.views.i_selectionview) ISubset (class in cytoflowgui.workflow.subset) IterByWrapper (class in cytoflow.utility) IView (class in cytoflow.views.i_view) IViewPlugin (class in cytoflowgui.view_plugins.i_view_plugin) IWorkflowOperation (class in cytoflowgui.workflow.operations.operation_base) IWorkflowView (class in cytoflowgui.workflow.views.view_base)

K

Kde1DHandler (class in cytoflowgui.view_plugins.kde_1d) Kde1DParamsHandler (class in cytoflowgui.view_plugins.kde_1d) Kde1DPlotParams (class in cytoflowgui.workflow.views.kde_1d) Kde1DPlugin (class in cytoflowgui.view_plugins.kde_1d) Kde1DView (class in cytoflow.views.kde_1d) Kde1DWorkflowView (class in cytoflowgui.workflow.views.kde_1d) Kde2DHandler (class in cytoflowgui.view_plugins.kde_2d) Kde2DParamsHandler (class in cytoflowgui.view_plugins.kde_2d) Kde2DPlotParams (class in cytoflowgui.workflow.views.kde_2d) Kde2DPlugin (class in cytoflowgui.view_plugins.kde_2d) Kde2DView (class in cytoflow.views.kde_2d) Kde2DWorkflowView (class in cytoflowgui.workflow.views.kde_2d) keep (cytoflow.operations.density.DensityGateOp attribute)

kernel (cytoflow.operations.register.RegistrationOp attribute) keywords (cytoflow.views.export_fcs.ExportFCS attribute) klass (cytoflowgui.editors.color_text_editor.ColorTextEditor attribute) (cytoflowgui.editors.toggle_button.ToggleButtonEditor attribute) (cytoflowgui.editors.vertical_notebook_editor.VerticalNotebookEditor attribute) KMeans1DView (class in cytoflow.operations.kmeans) KMeans2DView (class in cytoflow.operations.kmeans) KMeansHandler (class in cytoflowgui.op_plugins.kmeans) KMeansOp (class in cytoflow.operations.kmeans) KMeansPlugin (class in cytoflowgui.op_plugins.kmeans) KMeansViewHandler (class in cytoflowgui.op_plugins.kmeans) KMeansWorkflowOp (class in cytoflowgui.workflow.operations.kmeans) KMeansWorkflowView (class in cytoflowgui.workflow.operations.kmeans) KneeLocator (class in cytoflow.utility.kneed)

L

label (cytoflowgui.editors.toggle_button.ToggleButtonEditor attribute) (cytoflowgui.experiment_pane_model.ChannelsNode attribute) (cytoflowgui.experiment_pane_model.ConditionsNode attribute) (cytoflowgui.experiment_pane_model.StatisticsNode attribute) (cytoflowgui.experiment_pane_model.StringNode attribute) (cytoflowgui.experiment_pane_model.WorkflowItemNode attribute) label_value (cytoflowgui.editors.toggle_button.ToggleButtonEditor attribute) labels_map() (cytoflow.utility.minisom.MiniSom method) last_view_plotted (cytoflowgui.workflow.workflow.RemoteWorkflow attribute) layout (cytoflowgui.export_task.ExportTaskPane attribute) (cytoflowgui.flow_task.FlowTaskPane attribute) learning_rate (cytoflow.operations.som.SOMOp attribute) leaveEvent() (cytoflowgui.matplotlib_backend_local.FigureCanvasQTAggLocal method) levels (cytoflowgui.op_plugins.xform_stat.TransformStatisticHandler attribute) (cytoflowgui.view_plugins.bar_chart.BarChartHandler attribute) (cytoflowgui.view_plugins.long_table.LongTableHandler attribute) (cytoflowgui.view_plugins.matrix.MatrixHandler attribute) (cytoflowgui.view_plugins.mst.MSTHandler attribute) (cytoflowgui.view_plugins.stats_1d.Stats1DHandler attribute) (cytoflowgui.view_plugins.stats_2d.Stats2DHandler attribute) (cytoflowgui.view_plugins.table.TableHandler attribute) linear_model (cytoflow.operations.color_translation.ColorTranslationOp attribute) LinearScale (class in cytoflow.utility.linear_scale) listen_for_local() (cytoflowgui.matplotlib_backend_remote.FigureCanvasAggRemote method) listen_for_remote() (cytoflowgui.matplotlib_backend_local.FigureCanvasQTAggLocal method)

load_yaml() (in module cytoflowgui.workflow.serialization) LocalWorkflow (class in cytoflowgui.workflow.workflow) locations (cytoflow.operations.mst.MSTSelectionView attribute) (cytoflow.views.mst.MSTView attribute) locations_features (cytoflow.operations.mst.MSTSelectionView attribute) (cytoflow.views.mst.MSTView attribute) (cytoflowgui.view_plugins.mst.MSTHandler attribute) locations_level (cytoflow.operations.mst.MSTSelectionView attribute) (cytoflow.views.mst.MSTView attribute) locations_levels (cytoflowgui.view_plugins.mst.MSTHandler attribute) lock (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) log_excepthook() (in module cytoflowgui.run) log_exception() (in module cytoflowgui.matplotlib_backend_local) (in module cytoflowgui.matplotlib_backend_remote) (in module cytoflowgui.utility.logging) log_notification_handler() (in module cytoflowgui.run) LogicleMajorLocator (class in cytoflow.utility.logicle_scale) LogicleMinorLocator (class in cytoflow.utility.logicle_scale) LogicleScale (class in cytoflow.utility.logicle_scale) LogScale (class in cytoflow.utility.log_scale) LongTableHandler (class in cytoflowgui.view_plugins.long_table) LongTablePlugin (class in cytoflowgui.view_plugins.long_table) LongTableView (class in cytoflow.views.long_table) LongTableWorkflowView (class in cytoflowgui.workflow.views.long_table) low (cytoflow.operations.range.RangeOp attribute) low() (cytoflowgui.editors.range_slider.RangeSlider method)

M

M (cytoflow.utility.logicle_scale.LogicleScale attribute) main() (in module cytoflow.scripts.channel_voltages) (in module cytoflow.scripts.fcs_metadata) (in module cytoflow.scripts.parse_beads) (in module cytoflow.scripts.split_fcs) matplotlib_events (cytoflowgui.workflow.workflow.RemoteWorkflow attribute) (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) MatplotlibHlogScale (class in cytoflow.utility.hlog_scale) MatplotlibHlogScale.HlogTransform (class in cytoflow.utility.hlog_scale) MatplotlibHlogScale.InvertedLogicleTransform (class in cytoflow.utility.hlog_scale) MatplotlibLogicleScale (class in cytoflow.utility.logicle_scale) MatplotlibLogicleScale.InvertedLogicleTransform (class in cytoflow.utility.logicle_scale) MatplotlibLogicleScale.LogicleTransform (class in cytoflow.utility.logicle_scale) MatrixHandler (class in cytoflowgui.view_plugins.matrix) MatrixParamsHandler (class in cytoflowgui.view_plugins.matrix) MatrixPlotParams (class in cytoflowgui.workflow.views.matrix) MatrixPlugin (class in cytoflowgui.view_plugins.matrix) MatrixView (class in cytoflow.views.matrix) MatrixWorkflowView (class in cytoflowgui.workflow.views.matrix) max_clusters (cytoflow.operations.som.SOMOp attribute) max_discontinuity (cytoflow.operations.flowclean.FlowCleanOp attribute) max_drift (cytoflow.operations.flowclean.FlowCleanOp attribute) max_mean_drift (cytoflow.operations.flowclean.FlowCleanOp attribute) max_quantile (cytoflow.operations.density.DensityGateOp attribute) mean_95ci() (in module cytoflowgui.workflow.operations.channel_stat) (in module cytoflowgui.workflow.operations.xform_stat) measures (cytoflow.operations.flowclean.FlowCleanOp attribute) menu_bar (cytoflowgui.export_task.ExportTask attribute) (cytoflowgui.flow_task.FlowTask attribute) menu_group (cytoflowgui.op_plugins.autofluorescence.AutofluorescencePlugin attribute) (cytoflowgui.op_plugins.bead_calibration.BeadCalibrationPlugin attribute) (cytoflowgui.op_plugins.binning.BinningPlugin attribute) (cytoflowgui.op_plugins.bleedthrough_linear.BleedthroughLinearPlugin attribute) (cytoflowgui.op_plugins.category.CategoryPlugin attribute) (cytoflowgui.op_plugins.channel_stat.ChannelStatisticPlugin attribute) (cytoflowgui.op_plugins.color_translation.ColorTranslationPlugin attribute) (cytoflowgui.op_plugins.density.DensityGatePlugin attribute) (cytoflowgui.op_plugins.flowclean.FlowCleanPlugin attribute) (cytoflowgui.op_plugins.flowpeaks.FlowPeaksPlugin attribute) (cytoflowgui.op_plugins.gaussian_1d.GaussianMixture1DPlugin attribute) (cytoflowgui.op_plugins.gaussian_2d.GaussianMixture2DPlugin attribute) (cytoflowgui.op_plugins.hierarchy.HierarchyPlugin attribute) (cytoflowgui.op_plugins.import_op.ImportPlugin attribute) (cytoflowgui.op_plugins.kmeans.KMeansPlugin attribute) (cytoflowgui.op_plugins.merge_stat.MergeStatisticsPlugin attribute) (cytoflowgui.op_plugins.mst.MSTPlugin attribute) (cytoflowgui.op_plugins.multi_channel_stat.MultiChannelStatisticPlugin attribute) (cytoflowgui.op_plugins.pca.PCAPlugin attribute) (cytoflowgui.op_plugins.polygon.PolygonPlugin attribute) (cytoflowgui.op_plugins.quad.QuadPlugin attribute) (cytoflowgui.op_plugins.range.RangePlugin attribute) (cytoflowgui.op_plugins.range2d.Range2DPlugin attribute) (cytoflowgui.op_plugins.ratio.RatioPlugin attribute) (cytoflowgui.op_plugins.register.RegistrationPlugin attribute) (cytoflowgui.op_plugins.som.SOMPlugin attribute) (cytoflowgui.op_plugins.tasbe.TasbePlugin attribute) (cytoflowgui.op_plugins.threshold.ThresholdPlugin attribute) (cytoflowgui.op_plugins.tsne.tSNEPlugin attribute) (cytoflowgui.op_plugins.xform_stat.TransformStatisticPlugin attribute) merge_dist (cytoflow.operations.flowpeaks.FlowPeaksOp attribute) MergeStatisticsHandler (class in cytoflowgui.op_plugins.merge_stat) MergeStatisticsPlugin (class in cytoflowgui.op_plugins.merge_stat) MergeStatisticsWorkflowOp (class in cytoflowgui.workflow.operations.merge_stat) message_q (cytoflowgui.workflow.workflow.LocalWorkflow attribute) (cytoflowgui.workflow.workflow.RemoteWorkflow attribute) metadata (cytoflow.experiment.Experiment attribute) (cytoflowgui.editors.subset_list_editor.SubsetListEditor attribute) (cytoflowgui.import_dialog.Tube attribute) (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) metric (cytoflow.operations.mst.MSTSelectionView attribute) (cytoflow.operations.tsne.tSNEOp attribute) (cytoflow.views.mst.MSTView attribute) min_clusters (cytoflow.operations.som.SOMOp attribute) min_quantile (cytoflow.operations.density.DensityGateOp attribute) min_size (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute) MiniSom (class in cytoflow.utility.minisom) mixture_model (cytoflow.operations.color_translation.ColorTranslationOp attribute) model (cytoflowgui.cytoflow_application.CytoflowApplication attribute) (cytoflowgui.export_task.ExportTask attribute) (cytoflowgui.export_task.ExportTaskPane attribute) (cytoflowgui.flow_task.FlowTask attribute) (cytoflowgui.flow_task.FlowTaskPane attribute) (cytoflowgui.import_dialog.TubeTrait attribute) model_factory (cytoflowgui.preferences.CytoflowPreferencesPane attribute) modified (cytoflowgui.workflow.workflow.LocalWorkflow attribute) module cytoflow cytoflow.experiment cytoflow.operations cytoflow.operations.autofluorescence cytoflow.operations.base_op_views cytoflow.operations.bead_calibration cytoflow.operations.binning cytoflow.operations.bleedthrough_linear cytoflow.operations.category cytoflow.operations.centroid cytoflow.operations.channel_stat cytoflow.operations.color_translation cytoflow.operations.density cytoflow.operations.flowclean cytoflow.operations.flowpeaks cytoflow.operations.frame_stat cytoflow.operations.gaussian cytoflow.operations.hierarchy cytoflow.operations.i_operation cytoflow.operations.import_op cytoflow.operations.kmeans cytoflow.operations.mst cytoflow.operations.pca cytoflow.operations.polygon cytoflow.operations.quad cytoflow.operations.range cytoflow.operations.range2d cytoflow.operations.ratio cytoflow.operations.register cytoflow.operations.som cytoflow.operations.threshold cytoflow.operations.tsne cytoflow.operations.xform_stat cytoflow.scripts cytoflow.scripts.channel_voltages cytoflow.scripts.fcs_metadata cytoflow.scripts.parse_beads cytoflow.scripts.split_fcs cytoflow.utility cytoflow.utility.algorithms cytoflow.utility.consensus cytoflow.utility.consensus_cluster cytoflow.utility.custom_traits cytoflow.utility.cytoflow_errors cytoflow.utility.docstring cytoflow.utility.fcswrite cytoflow.utility.hlog_scale cytoflow.utility.kneed cytoflow.utility.linear_scale cytoflow.utility.log_scale cytoflow.utility.logging_ext cytoflow.utility.logicle_scale cytoflow.utility.minisom cytoflow.utility.scale cytoflow.utility.util_functions cytoflow.views cytoflow.views.bar_chart cytoflow.views.base_views cytoflow.views.densityplot cytoflow.views.export_fcs cytoflow.views.histogram cytoflow.views.histogram_2d cytoflow.views.i_selectionview cytoflow.views.i_view cytoflow.views.kde_1d cytoflow.views.kde_2d cytoflow.views.long_table cytoflow.views.matrix cytoflow.views.mst cytoflow.views.parallel_coords cytoflow.views.radviz cytoflow.views.scatterplot cytoflow.views.stats_1d cytoflow.views.stats_2d cytoflow.views.table cytoflow.views.violin cytoflowgui cytoflowgui.cytoflow_application cytoflowgui.editors cytoflowgui.editors.color_text_editor cytoflowgui.editors.ext_enum_editor cytoflowgui.editors.instance_handler_editor cytoflowgui.editors.range_slider cytoflowgui.editors.subset_list_editor cytoflowgui.editors.tab_list_editor cytoflowgui.editors.toggle_button cytoflowgui.editors.value_bounds_editor cytoflowgui.editors.vertical_list_editor cytoflowgui.editors.vertical_notebook cytoflowgui.editors.vertical_notebook_editor cytoflowgui.experiment_pane cytoflowgui.experiment_pane_model cytoflowgui.export_task cytoflowgui.flow_task cytoflowgui.help_pane cytoflowgui.import_dialog cytoflowgui.matplotlib_backend_local cytoflowgui.matplotlib_backend_remote cytoflowgui.op_plugins cytoflowgui.op_plugins.autofluorescence cytoflowgui.op_plugins.bead_calibration cytoflowgui.op_plugins.binning cytoflowgui.op_plugins.bleedthrough_linear cytoflowgui.op_plugins.category cytoflowgui.op_plugins.channel_stat cytoflowgui.op_plugins.color_translation cytoflowgui.op_plugins.density cytoflowgui.op_plugins.flowclean cytoflowgui.op_plugins.flowpeaks cytoflowgui.op_plugins.gaussian_1d cytoflowgui.op_plugins.gaussian_2d cytoflowgui.op_plugins.hierarchy cytoflowgui.op_plugins.i_op_plugin cytoflowgui.op_plugins.import_op cytoflowgui.op_plugins.kmeans cytoflowgui.op_plugins.merge_stat cytoflowgui.op_plugins.mst cytoflowgui.op_plugins.multi_channel_stat cytoflowgui.op_plugins.op_plugin_base cytoflowgui.op_plugins.pca cytoflowgui.op_plugins.polygon cytoflowgui.op_plugins.quad cytoflowgui.op_plugins.range cytoflowgui.op_plugins.range2d cytoflowgui.op_plugins.ratio cytoflowgui.op_plugins.register cytoflowgui.op_plugins.som cytoflowgui.op_plugins.tasbe cytoflowgui.op_plugins.threshold cytoflowgui.op_plugins.tsne cytoflowgui.op_plugins.xform_stat cytoflowgui.preferences cytoflowgui.run cytoflowgui.subset_controllers cytoflowgui.util cytoflowgui.utility cytoflowgui.utility.event_tracer cytoflowgui.utility.logging cytoflowgui.view_pane cytoflowgui.view_plugins cytoflowgui.view_plugins.bar_chart cytoflowgui.view_plugins.density cytoflowgui.view_plugins.export_fcs cytoflowgui.view_plugins.histogram cytoflowgui.view_plugins.histogram_2d cytoflowgui.view_plugins.i_view_plugin cytoflowgui.view_plugins.kde_1d cytoflowgui.view_plugins.kde_2d cytoflowgui.view_plugins.long_table cytoflowgui.view_plugins.matrix cytoflowgui.view_plugins.mst cytoflowgui.view_plugins.parallel_coords cytoflowgui.view_plugins.radviz cytoflowgui.view_plugins.scatterplot cytoflowgui.view_plugins.stats_1d cytoflowgui.view_plugins.stats_2d cytoflowgui.view_plugins.table cytoflowgui.view_plugins.view_plugin_base cytoflowgui.view_plugins.violin cytoflowgui.workflow cytoflowgui.workflow.operations cytoflowgui.workflow.operations.autofluorescence cytoflowgui.workflow.operations.bead_calibration cytoflowgui.workflow.operations.binning cytoflowgui.workflow.operations.bleedthrough_linear cytoflowgui.workflow.operations.category cytoflowgui.workflow.operations.channel_stat cytoflowgui.workflow.operations.color_translation cytoflowgui.workflow.operations.density cytoflowgui.workflow.operations.flowclean cytoflowgui.workflow.operations.flowpeaks cytoflowgui.workflow.operations.gaussian_1d cytoflowgui.workflow.operations.gaussian_2d cytoflowgui.workflow.operations.hierarchy cytoflowgui.workflow.operations.import_op cytoflowgui.workflow.operations.kmeans cytoflowgui.workflow.operations.merge_stat cytoflowgui.workflow.operations.mst cytoflowgui.workflow.operations.multi_channel_stat cytoflowgui.workflow.operations.operation_base cytoflowgui.workflow.operations.pca cytoflowgui.workflow.operations.polygon cytoflowgui.workflow.operations.quad cytoflowgui.workflow.operations.range cytoflowgui.workflow.operations.range2d cytoflowgui.workflow.operations.ratio cytoflowgui.workflow.operations.register cytoflowgui.workflow.operations.som cytoflowgui.workflow.operations.tasbe cytoflowgui.workflow.operations.threshold cytoflowgui.workflow.operations.tsne cytoflowgui.workflow.operations.xform_stat cytoflowgui.workflow.serialization cytoflowgui.workflow.subset cytoflowgui.workflow.views cytoflowgui.workflow.views.bar_chart cytoflowgui.workflow.views.density cytoflowgui.workflow.views.export_fcs cytoflowgui.workflow.views.histogram cytoflowgui.workflow.views.histogram_2d cytoflowgui.workflow.views.kde_1d cytoflowgui.workflow.views.kde_2d cytoflowgui.workflow.views.long_table cytoflowgui.workflow.views.matrix cytoflowgui.workflow.views.mst cytoflowgui.workflow.views.parallel_coords cytoflowgui.workflow.views.radviz cytoflowgui.workflow.views.scatterplot cytoflowgui.workflow.views.stats_1d cytoflowgui.workflow.views.stats_2d cytoflowgui.workflow.views.table cytoflowgui.workflow.views.view_base cytoflowgui.workflow.views.violin cytoflowgui.workflow.workflow cytoflowgui.workflow.workflow_item cytoflowgui.workflow_controller cytoflowgui.workflow_pane

monitor_remote_process() (in module cytoflowgui.run) MOUSE_DOUBLE_CLICK_EVENT (cytoflowgui.matplotlib_backend_local.Msg attribute) (cytoflowgui.matplotlib_backend_remote.Msg attribute) MOUSE_MOVE_EVENT (cytoflowgui.matplotlib_backend_local.Msg attribute) (cytoflowgui.matplotlib_backend_remote.Msg attribute) MOUSE_PRESS_EVENT (cytoflowgui.matplotlib_backend_local.Msg attribute) (cytoflowgui.matplotlib_backend_remote.Msg attribute) MOUSE_RELEASE_EVENT (cytoflowgui.matplotlib_backend_local.Msg attribute) (cytoflowgui.matplotlib_backend_remote.Msg attribute) mouseDoubleClickEvent() (cytoflowgui.matplotlib_backend_local.FigureCanvasQTAggLocal method) mouseMoveEvent() (cytoflowgui.editors.range_slider.RangeSlider method) (cytoflowgui.matplotlib_backend_local.FigureCanvasQTAggLocal method) mousePressEvent() (cytoflowgui.editors.range_slider.RangeSlider method) (cytoflowgui.matplotlib_backend_local.FigureCanvasQTAggLocal method) mouseReleaseEvent() (cytoflowgui.editors.range_slider.RangeSlider method) (cytoflowgui.matplotlib_backend_local.FigureCanvasQTAggLocal method) movable (cytoflowgui.experiment_pane.ExperimentBrowserDockPane attribute) (cytoflowgui.export_task.ExportPane attribute) (cytoflowgui.view_pane.PlotParamsPane attribute) MplFilter (class in cytoflow.utility.logging_ext) Msg (class in cytoflowgui.matplotlib_backend_local) (class in cytoflowgui.matplotlib_backend_remote) (class in cytoflowgui.workflow.workflow) MSTHandler (class in cytoflowgui.view_plugins.mst) MSTOp (class in cytoflow.operations.mst) MSTOpHandler (class in cytoflowgui.op_plugins.mst) MSTParamsHandler (class in cytoflowgui.view_plugins.mst) MSTPlotParams (class in cytoflowgui.workflow.views.mst) MSTPlugin (class in cytoflowgui.op_plugins.mst) (class in cytoflowgui.view_plugins.mst) MSTSelectionView (class in cytoflow.operations.mst) MSTView (class in cytoflow.views.mst) MSTWorkflowOp (class in cytoflowgui.workflow.operations.mst) MSTWorkflowSelectionView (class in cytoflowgui.workflow.operations.mst) MSTWorkflowView (class in cytoflowgui.workflow.views.mst) MultiChannelStatisticHandler (class in cytoflowgui.op_plugins.multi_channel_stat) MultiChannelStatisticPlugin (class in cytoflowgui.op_plugins.multi_channel_stat) MultiChannelStatisticWorkflowOp (class in cytoflowgui.workflow.operations.multi_channel_stat) multiple_open (cytoflowgui.editors.vertical_notebook.VerticalNotebook attribute) (cytoflowgui.editors.vertical_notebook_editor.VerticalNotebookEditor attribute) MultiThreadChangeEventRecorder (class in cytoflowgui.utility.event_tracer) MultiThreadRecordContainer (class in cytoflowgui.utility.event_tracer) mutable (cytoflowgui.editors.subset_list_editor.SubsetListEditor attribute)

N

n_resamples (cytoflow.operations.som.SOMOp attribute) name (cytoflow.operations.binning.BinningOp attribute) (cytoflow.operations.category.CategoryOp attribute) (cytoflow.operations.channel_stat.ChannelStatisticOp attribute) (cytoflow.operations.color_translation.ColorTranslationDiagnostic attribute) (cytoflow.operations.density.DensityGateOp attribute) (cytoflow.operations.flowclean.FlowCleanOp attribute) (cytoflow.operations.flowpeaks.FlowPeaksOp attribute) (cytoflow.operations.frame_stat.FrameStatisticOp attribute) (cytoflow.operations.gaussian.GaussianMixtureOp attribute) (cytoflow.operations.hierarchy.HierarchyOp attribute) (cytoflow.operations.i_operation.IOperation attribute) (cytoflow.operations.kmeans.KMeansOp attribute) (cytoflow.operations.mst.ConditionSelectionOp attribute) (cytoflow.operations.mst.MSTOp attribute) (cytoflow.operations.pca.PCAOp attribute) (cytoflow.operations.polygon.PolygonOp attribute) (cytoflow.operations.quad.QuadOp attribute) (cytoflow.operations.range.RangeOp attribute) (cytoflow.operations.range2d.Range2DOp attribute) (cytoflow.operations.ratio.RatioOp attribute) (cytoflow.operations.som.SOMOp attribute) (cytoflow.operations.threshold.ThresholdOp attribute) (cytoflow.operations.tsne.tSNEOp attribute) (cytoflow.operations.xform_stat.TransformStatisticOp attribute) (cytoflow.utility.hlog_scale.HlogScale attribute) (cytoflow.utility.hlog_scale.MatplotlibHlogScale attribute) (cytoflow.utility.linear_scale.LinearScale attribute) (cytoflow.utility.log_scale.LogScale attribute) (cytoflow.utility.logicle_scale.LogicleScale attribute) (cytoflow.utility.logicle_scale.MatplotlibLogicleScale attribute) (cytoflow.utility.scale.IScale attribute) (cytoflowgui.cytoflow_application.CytoflowApplication attribute) (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute) (cytoflowgui.experiment_pane.ExperimentBrowserDockPane attribute) (cytoflowgui.experiment_pane_model.StringNode attribute) (cytoflowgui.export_task.ExportPane attribute) (cytoflowgui.export_task.ExportTaskPane attribute) (cytoflowgui.flow_task.FlowTask attribute) (cytoflowgui.flow_task.FlowTaskPane attribute) (cytoflowgui.help_pane.HelpDockPane attribute) (cytoflowgui.import_dialog.TubeTrait attribute) (cytoflowgui.op_plugins.i_op_plugin.IOperationPlugin attribute) (cytoflowgui.utility.event_tracer.ChangeMessageRecord attribute) (cytoflowgui.view_pane.PlotParamsPane attribute) (cytoflowgui.view_pane.ViewDockPane attribute) (cytoflowgui.view_plugins.i_view_plugin.IViewPlugin attribute) (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) (cytoflowgui.workflow_controller.WorkflowItemHandler attribute) (cytoflowgui.workflow_pane.WorkflowDockPane attribute)

name_metadata (cytoflow.operations.import_op.ImportOp attribute) name_object (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute) name_object_trait (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute) new (cytoflowgui.utility.event_tracer.ChangeMessageRecord attribute) new_figure_manager() (in module cytoflowgui.matplotlib_backend_remote) NEW_WORKFLOW (cytoflowgui.workflow.workflow.Msg attribute) next_wi (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) NO_MODEL (cytoflowgui.workflow.operations.tasbe.Progress attribute) norm() (cytoflow.utility.hlog_scale.HlogScale method) (cytoflow.utility.linear_scale.LinearScale method) (cytoflow.utility.log_scale.LogScale method) (cytoflow.utility.logicle_scale.LogicleScale method) (cytoflow.utility.scale.IScale method) norm_elbow (cytoflow.utility.kneed.KneeLocator property) norm_elbow_y (cytoflow.utility.kneed.KneeLocator property) not_false() (in module cytoflowgui.import_dialog) not_true() (in module cytoflowgui.import_dialog) NullView (class in cytoflow.operations.base_op_views) num_clusters (cytoflow.operations.kmeans.KMeansOp attribute) num_components (cytoflow.operations.gaussian.GaussianMixtureOp attribute) (cytoflow.operations.pca.PCAOp attribute) num_hist_bins() (in module cytoflow.utility.util_functions) num_iterations (cytoflow.operations.som.SOMOp attribute) numerator (cytoflow.operations.ratio.RatioOp attribute) numeric_indices (cytoflowgui.view_plugins.stats_1d.Stats1DHandler attribute) (cytoflowgui.view_plugins.stats_2d.Stats2DHandler attribute)

O

old (cytoflowgui.utility.event_tracer.ChangeMessageRecord attribute) on_about() (cytoflowgui.flow_task.FlowTask method) on_docs() (cytoflowgui.flow_task.FlowTask method) on_export() (cytoflowgui.export_task.ExportTask method) (cytoflowgui.flow_task.FlowTask method) on_new() (cytoflowgui.flow_task.FlowTask method) on_notebook() (cytoflowgui.flow_task.FlowTask method) on_open() (cytoflowgui.flow_task.FlowTask method) on_prefs() (cytoflowgui.flow_task.FlowTask method) on_problem() (cytoflowgui.flow_task.FlowTask method) on_save() (cytoflowgui.flow_task.FlowTask method) on_save_as() (cytoflowgui.flow_task.FlowTask method) on_toggle_browser() (cytoflowgui.flow_task.FlowTask method) on_toggle_help() (cytoflowgui.flow_task.FlowTask method) on_toggle_plot_params() (cytoflowgui.flow_task.FlowTask method) on_toggle_view() (cytoflowgui.flow_task.FlowTask method) on_toggle_workflow() (cytoflowgui.flow_task.FlowTask method) op (cytoflow.operations.autofluorescence.AutofluorescenceDiagnosticView attribute) (cytoflow.operations.base_op_views.OpView attribute) (cytoflow.operations.bead_calibration.BeadCalibrationDiagnostic attribute) (cytoflow.operations.binning.BinningView attribute) (cytoflow.operations.bleedthrough_linear.BleedthroughLinearDiagnostic attribute) (cytoflow.operations.color_translation.ColorTranslationDiagnostic attribute) (cytoflow.operations.density.DensityGateView attribute) (cytoflow.operations.flowclean.FlowCleanDiagnostic attribute) (cytoflow.operations.flowpeaks.FlowPeaks1DView attribute) (cytoflow.operations.flowpeaks.FlowPeaks2DDensityView attribute) (cytoflow.operations.flowpeaks.FlowPeaks2DView attribute) (cytoflow.operations.gaussian.GaussianMixture1DView attribute) (cytoflow.operations.gaussian.GaussianMixture2DView attribute) (cytoflow.operations.kmeans.KMeans1DView attribute) (cytoflow.operations.kmeans.KMeans2DView attribute) (cytoflow.operations.mst.MSTSelectionView attribute) (cytoflow.operations.polygon.DensityPolygonSelectionView attribute) (cytoflow.operations.polygon.ScatterplotPolygonSelectionView attribute) (cytoflow.operations.quad.DensityQuadSelectionView attribute) (cytoflow.operations.quad.ScatterplotQuadSelectionView attribute) (cytoflow.operations.range.RangeSelection attribute) (cytoflow.operations.range2d.DensityRangeSelection2DView attribute) (cytoflow.operations.range2d.ScatterplotRangeSelection2DView attribute) (cytoflow.operations.register.RegistrationDiagnosticView attribute) (cytoflow.operations.som.SOMDiagnosticView attribute) (cytoflow.operations.threshold.ThresholdSelection attribute) Op1DView (class in cytoflow.operations.base_op_views) Op2DView (class in cytoflow.operations.base_op_views) op_error (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) op_error_trait (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) op_plugins (cytoflowgui.flow_task.FlowTask attribute) (cytoflowgui.help_pane.HelpDockPane attribute) (cytoflowgui.workflow_controller.WorkflowController attribute) (cytoflowgui.workflow_controller.WorkflowItemHandler attribute)

OP_STATUS (cytoflowgui.workflow.Changed attribute) op_warning (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) op_warning_trait (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) open() (cytoflowgui.editors.vertical_notebook.VerticalNotebook method) open_file() (cytoflowgui.flow_task.FlowTask method) operation (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) operation_id (cytoflowgui.op_plugins.autofluorescence.AutofluorescencePlugin attribute) (cytoflowgui.op_plugins.bead_calibration.BeadCalibrationPlugin attribute) (cytoflowgui.op_plugins.binning.BinningPlugin attribute) (cytoflowgui.op_plugins.bleedthrough_linear.BleedthroughLinearPlugin attribute) (cytoflowgui.op_plugins.category.CategoryPlugin attribute) (cytoflowgui.op_plugins.channel_stat.ChannelStatisticPlugin attribute) (cytoflowgui.op_plugins.color_translation.ColorTranslationPlugin attribute) (cytoflowgui.op_plugins.density.DensityGatePlugin attribute) (cytoflowgui.op_plugins.flowclean.FlowCleanPlugin attribute) (cytoflowgui.op_plugins.flowpeaks.FlowPeaksPlugin attribute) (cytoflowgui.op_plugins.gaussian_1d.GaussianMixture1DPlugin attribute) (cytoflowgui.op_plugins.gaussian_2d.GaussianMixture2DPlugin attribute) (cytoflowgui.op_plugins.hierarchy.HierarchyPlugin attribute) (cytoflowgui.op_plugins.i_op_plugin.IOperationPlugin attribute) (cytoflowgui.op_plugins.import_op.ImportPlugin attribute) (cytoflowgui.op_plugins.kmeans.KMeansPlugin attribute) (cytoflowgui.op_plugins.merge_stat.MergeStatisticsPlugin attribute) (cytoflowgui.op_plugins.mst.MSTPlugin attribute) (cytoflowgui.op_plugins.multi_channel_stat.MultiChannelStatisticPlugin attribute) (cytoflowgui.op_plugins.pca.PCAPlugin attribute) (cytoflowgui.op_plugins.polygon.PolygonPlugin attribute) (cytoflowgui.op_plugins.quad.QuadPlugin attribute) (cytoflowgui.op_plugins.range.RangePlugin attribute) (cytoflowgui.op_plugins.range2d.Range2DPlugin attribute) (cytoflowgui.op_plugins.ratio.RatioPlugin attribute) (cytoflowgui.op_plugins.register.RegistrationPlugin attribute) (cytoflowgui.op_plugins.som.SOMPlugin attribute) (cytoflowgui.op_plugins.tasbe.TasbePlugin attribute) (cytoflowgui.op_plugins.threshold.ThresholdPlugin attribute) (cytoflowgui.op_plugins.tsne.tSNEPlugin attribute) (cytoflowgui.op_plugins.xform_stat.TransformStatisticPlugin attribute) operation_traits_view() (cytoflowgui.workflow_controller.WorkflowItemHandler method) OpHandler (class in cytoflowgui.op_plugins.op_plugin_base) OpPluginManager (class in cytoflowgui.op_plugins.i_op_plugin) OpView (class in cytoflow.operations.base_op_views) output_dims (cytoflow.utility.hlog_scale.MatplotlibHlogScale.HlogTransform attribute) (cytoflow.utility.hlog_scale.MatplotlibHlogScale.InvertedLogicleTransform attribute) (cytoflow.utility.logicle_scale.MatplotlibLogicleScale.InvertedLogicleTransform attribute) (cytoflow.utility.logicle_scale.MatplotlibLogicleScale.LogicleTransform attribute)

P

page_deletable (cytoflowgui.editors.vertical_notebook_editor.VerticalNotebookEditor attribute) page_description (cytoflowgui.editors.vertical_notebook_editor.VerticalNotebookEditor attribute) page_icon (cytoflowgui.editors.vertical_notebook_editor.VerticalNotebookEditor attribute) page_name (cytoflowgui.editors.vertical_notebook_editor.VerticalNotebookEditor attribute) pages (cytoflowgui.editors.vertical_notebook.VerticalNotebook attribute) paintEvent() (cytoflowgui.editors.range_slider.RangeSlider method) (cytoflowgui.matplotlib_backend_local.FigureCanvasQTAggLocal method) ParallelCoordinatesHandler (class in cytoflowgui.view_plugins.parallel_coords) ParallelCoordinatesParamsHandler (class in cytoflowgui.view_plugins.parallel_coords) ParallelCoordinatesPlotParams (class in cytoflowgui.workflow.views.parallel_coords) ParallelCoordinatesPlugin (class in cytoflowgui.view_plugins.parallel_coords) ParallelCoordinatesView (class in cytoflow.views.parallel_coords) ParallelCoordinatesWorkflowView (class in cytoflowgui.workflow.views.parallel_coords) params_pane (cytoflowgui.export_task.ExportTask attribute) parent (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute) (cytoflowgui.import_dialog.Tube attribute) parse_tube() (in module cytoflow.operations.import_op) path (cytoflow.views.export_fcs.ExportFCS attribute) pca_weights_init() (cytoflow.utility.minisom.MiniSom method) PCAHandler (class in cytoflowgui.op_plugins.pca) PCAOp (class in cytoflow.operations.pca) PCAPlugin (class in cytoflowgui.op_plugins.pca) PCAWorkflowOp (class in cytoflowgui.workflow.operations.pca) percentiles() (in module cytoflow.utility.algorithms) perplexity (cytoflow.operations.tsne.tSNEOp attribute) plot() (cytoflow.operations.autofluorescence.AutofluorescenceDiagnosticView method) (cytoflow.operations.base_op_views.AnnotatingView method) (cytoflow.operations.base_op_views.ByView method) (cytoflow.operations.bead_calibration.BeadCalibrationDiagnostic method) (cytoflow.operations.binning.BinningView method) (cytoflow.operations.bleedthrough_linear.BleedthroughLinearDiagnostic method) (cytoflow.operations.color_translation.ColorTranslationDiagnostic method) (cytoflow.operations.density.DensityGateView method) (cytoflow.operations.flowclean.FlowCleanDiagnostic method) (cytoflow.operations.flowpeaks.FlowPeaks1DView method) (cytoflow.operations.flowpeaks.FlowPeaks2DDensityView method) (cytoflow.operations.flowpeaks.FlowPeaks2DView method) (cytoflow.operations.gaussian.GaussianMixture1DView method) (cytoflow.operations.gaussian.GaussianMixture2DView method) (cytoflow.operations.kmeans.KMeans1DView method) (cytoflow.operations.kmeans.KMeans2DView method) (cytoflow.operations.mst.MSTSelectionView method) (cytoflow.operations.polygon.DensityPolygonSelectionView method) (cytoflow.operations.polygon.ScatterplotPolygonSelectionView method) (cytoflow.operations.quad.DensityQuadSelectionView method) (cytoflow.operations.quad.ScatterplotQuadSelectionView method) (cytoflow.operations.range.RangeSelection method) (cytoflow.operations.register.RegistrationDiagnosticView method) (cytoflow.operations.som.SOMDiagnosticView method) (cytoflow.operations.threshold.ThresholdSelection method) (cytoflow.views.bar_chart.BarChartView method) (cytoflow.views.base_views.Base1DStatisticsView method) (cytoflow.views.base_views.Base1DView method) (cytoflow.views.base_views.Base2DStatisticsView method) (cytoflow.views.base_views.Base2DView method) (cytoflow.views.base_views.BaseDataView method) (cytoflow.views.base_views.BaseNDView method) (cytoflow.views.base_views.BaseStatisticsView method) (cytoflow.views.base_views.BaseView method) (cytoflow.views.densityplot.DensityView method) (cytoflow.views.histogram.HistogramView method) (cytoflow.views.histogram_2d.Histogram2DView method) (cytoflow.views.i_view.IView method) (cytoflow.views.kde_1d.Kde1DView method) (cytoflow.views.kde_2d.Kde2DView method) (cytoflow.views.long_table.LongTableView method) (cytoflow.views.matrix.MatrixView method) (cytoflow.views.mst.MSTView method) (cytoflow.views.parallel_coords.ParallelCoordinatesView method) (cytoflow.views.radviz.RadvizView method) (cytoflow.views.scatterplot.ScatterplotView method) (cytoflow.views.stats_1d.Stats1DView method) (cytoflow.views.stats_2d.Stats2DView method) (cytoflow.views.table.TableView method) (cytoflow.views.violin.ViolinPlotView method) (cytoflowgui.workflow.operations.flowclean.FlowCleanWorkflowView method) (cytoflowgui.workflow.operations.flowpeaks.FlowPeaksWorkflowView method) (cytoflowgui.workflow.operations.gaussian_1d.GaussianMixture1DWorkflowView method) (cytoflowgui.workflow.operations.gaussian_2d.GaussianMixture2DWorkflowView method) (cytoflowgui.workflow.operations.kmeans.KMeansWorkflowView method) (cytoflowgui.workflow.operations.polygon.PolygonSelectionView method) (cytoflowgui.workflow.operations.range2d.Range2DSelectionView method) (cytoflowgui.workflow.operations.tasbe.TasbeWorkflowView method) (cytoflowgui.workflow.views.export_fcs.ExportFCSWorkflowView method) (cytoflowgui.workflow.views.long_table.LongTableWorkflowView method) (cytoflowgui.workflow.views.matrix.MatrixWorkflowView method) (cytoflowgui.workflow.views.mst.MSTWorkflowView method) (cytoflowgui.workflow.views.table.TableWorkflowView method) (cytoflowgui.workflow.views.view_base.WorkflowByView method) (cytoflowgui.workflow.views.view_base.WorkflowFacetView method) (cytoflowgui.workflow.workflow_item.WorkflowItem method)

plot_auc_cdf() (cytoflow.utility.consensus.ConsensusClustering method) PLOT_CALLED (cytoflowgui.workflow.workflow.Msg attribute) plot_cdf() (cytoflow.utility.consensus.ConsensusClustering method) plot_change_area_under_cdf() (cytoflow.utility.consensus.ConsensusClustering method) plot_clustermap() (cytoflow.utility.consensus.ConsensusClustering method) plot_hist() (cytoflow.utility.consensus.ConsensusClustering method) plot_knee() (cytoflow.utility.kneed.KneeLocator method) plot_knee_normalized() (cytoflow.utility.kneed.KneeLocator method) plot_lock (cytoflowgui.workflow.workflow.RemoteWorkflow attribute) (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) plot_names (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) plot_names_label (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) plot_params_pane (cytoflowgui.flow_task.FlowTask attribute) plotfacet (cytoflowgui.workflow.views.view_base.WorkflowFacetView attribute) PlotParamsPane (class in cytoflowgui.view_pane) PluginHelpMixin (class in cytoflowgui.op_plugins.op_plugin_base) (class in cytoflowgui.view_plugins.view_plugin_base) plugins (cytoflowgui.workflow_pane.WorkflowDockPane attribute) poly_area() (in module cytoflow.operations.gaussian) polygon_contains() (in module cytoflow.utility.algorithms) PolygonHandler (class in cytoflowgui.op_plugins.polygon) PolygonOp (class in cytoflow.operations.polygon) PolygonPlotParams (class in cytoflowgui.workflow.operations.polygon) PolygonPlugin (class in cytoflowgui.op_plugins.polygon) PolygonSelectionView (class in cytoflowgui.workflow.operations.polygon) PolygonViewHandler (class in cytoflowgui.op_plugins.polygon) PolygonViewParamsHandler (class in cytoflowgui.op_plugins.polygon) PolygonWorkflowOp (class in cytoflowgui.workflow.operations.polygon) PositiveCFloat (class in cytoflow.utility.custom_traits) PositiveCInt (class in cytoflow.utility.custom_traits) PositiveFloat (class in cytoflow.utility.custom_traits) PositiveInt (class in cytoflow.utility.custom_traits) post_tracer() (cytoflowgui.utility.event_tracer.ChangeEventRecorder method) (cytoflowgui.utility.event_tracer.MultiThreadChangeEventRecorder method) posteriors (cytoflow.operations.gaussian.GaussianMixtureOp attribute) pre_tracer() (cytoflowgui.utility.event_tracer.ChangeEventRecorder method) (cytoflowgui.utility.event_tracer.MultiThreadChangeEventRecorder method) predict() (cytoflow.utility.consensus_cluster.ConsensusCluster method) predict_data() (cytoflow.utility.consensus_cluster.ConsensusCluster method) PREFERENCES (cytoflowgui.flow_task.FlowTaskPlugin attribute) preferences_helper (cytoflowgui.cytoflow_application.CytoflowApplication attribute) PREFERENCES_PANES (cytoflowgui.flow_task.FlowTaskPlugin attribute) preferences_path (cytoflowgui.preferences.CytoflowPreferences attribute) PREV_RESULT (cytoflowgui.workflow.Changed attribute) previous_channels (cytoflowgui.workflow_controller.WorkflowItemHandler attribute) previous_conditions (cytoflowgui.op_plugins.category.CategoryOpSubsetHandler attribute) (cytoflowgui.workflow_controller.WorkflowItemHandler attribute) previous_conditions_names (cytoflowgui.workflow_controller.WorkflowItemHandler attribute) previous_statistics_names (cytoflowgui.workflow_controller.WorkflowItemHandler attribute) previous_wi (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) PRINT (cytoflowgui.matplotlib_backend_local.Msg attribute) (cytoflowgui.matplotlib_backend_remote.Msg attribute) print_figure() (cytoflowgui.matplotlib_backend_local.FigureCanvasQTAggLocal method) Progress (class in cytoflowgui.workflow.operations.tasbe)

Q

QuadHandler (class in cytoflowgui.op_plugins.quad) QuadOp (class in cytoflow.operations.quad) QuadPlugin (class in cytoflowgui.op_plugins.quad) QuadSelectionView (class in cytoflowgui.workflow.operations.quad) QuadViewHandler (class in cytoflowgui.op_plugins.quad)

QuadWorkflowOp (class in cytoflowgui.workflow.operations.quad) quantization() (cytoflow.utility.minisom.MiniSom method) quantization_error() (cytoflow.utility.minisom.MiniSom method) quantization_history() (cytoflow.utility.minisom.MiniSom method) query() (cytoflow.experiment.Experiment method)

R

r (cytoflow.utility.logicle_scale.LogicleScale attribute) RadvizHandler (class in cytoflowgui.view_plugins.radviz) RadvizParamsHandler (class in cytoflowgui.view_plugins.radviz) RadvizPlotParams (class in cytoflowgui.workflow.views.radviz) RadvizPlugin (class in cytoflowgui.view_plugins.radviz) RadvizView (class in cytoflow.views.radviz) RadvizWorkflowView (class in cytoflowgui.workflow.views.radviz) random_string() (in module cytoflow.utility.util_functions) random_weights_init() (cytoflow.utility.minisom.MiniSom method) Range2DHandler (class in cytoflowgui.op_plugins.range2d) Range2DOp (class in cytoflow.operations.range2d) Range2DPlotParams (class in cytoflowgui.workflow.operations.range2d) Range2DPlugin (class in cytoflowgui.op_plugins.range2d) Range2DSelectionView (class in cytoflowgui.workflow.operations.range2d) Range2DViewHandler (class in cytoflowgui.op_plugins.range2d) Range2DViewParamsHandler (class in cytoflowgui.op_plugins.range2d) Range2DWorkflowOp (class in cytoflowgui.workflow.operations.range2d) RangeHandler (class in cytoflowgui.op_plugins.range) RangeOp (class in cytoflow.operations.range) RangePlugin (class in cytoflowgui.op_plugins.range) RangeSelection (class in cytoflow.operations.range) RangeSelectionView (class in cytoflowgui.workflow.operations.range) RangeSlider (class in cytoflowgui.editors.range_slider) RangeSubset (class in cytoflowgui.workflow.subset) RangeSubsetHandler (class in cytoflowgui.subset_controllers) RangeViewHandler (class in cytoflowgui.op_plugins.range) RangeWorkflowOp (class in cytoflowgui.workflow.operations.range) RatioHandler (class in cytoflowgui.op_plugins.ratio) RatioOp (class in cytoflow.operations.ratio) RatioPlugin (class in cytoflowgui.op_plugins.ratio) RatioWorkflowOp (class in cytoflowgui.workflow.operations.ratio) record() (cytoflowgui.utility.event_tracer.RecordContainer method) record_events() (in module cytoflowgui.utility.event_tracer) RecordContainer (class in cytoflowgui.utility.event_tracer) recv_main() (cytoflowgui.workflow.workflow.LocalWorkflow method) (cytoflowgui.workflow.workflow.RemoteWorkflow method) recv_thread (cytoflowgui.workflow.workflow.LocalWorkflow attribute) (cytoflowgui.workflow.workflow.RemoteWorkflow attribute) register_deletable_listener() (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage method) register_description_listener() (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage method) register_icon_listener() (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage method) register_name_listener() (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage method) register_scale() (in module cytoflow.utility.scale) RegistrationDiagnosticView (class in cytoflow.operations.register)

RegistrationDiagnosticViewHandler (class in cytoflowgui.op_plugins.register) RegistrationDiagnosticWorkflowView (class in cytoflowgui.workflow.operations.register) RegistrationHandler (class in cytoflowgui.op_plugins.register) RegistrationOp (class in cytoflow.operations.register) RegistrationPlugin (class in cytoflowgui.op_plugins.register) RegistrationWorkflowOp (class in cytoflowgui.workflow.operations.register) remote_canvas_connection (cytoflowgui.cytoflow_application.CytoflowApplication attribute) remote_eval() (cytoflowgui.workflow.workflow.LocalWorkflow method) remote_exec() (cytoflowgui.workflow.workflow.LocalWorkflow method) remote_main() (in module cytoflowgui.run) remote_process (cytoflowgui.cytoflow_application.CytoflowApplication attribute) remote_workflow_connection (cytoflowgui.cytoflow_application.CytoflowApplication attribute) RemoteWorkflow (class in cytoflowgui.workflow.workflow) remove_channel (cytoflowgui.op_plugins.bead_calibration.BeadCalibrationHandler attribute) (cytoflowgui.op_plugins.bleedthrough_linear.BleedthroughLinearHandler attribute) (cytoflowgui.op_plugins.flowclean.FlowCleanHandler attribute) (cytoflowgui.op_plugins.pca.PCAHandler attribute) (cytoflowgui.op_plugins.register.RegistrationHandler attribute) (cytoflowgui.op_plugins.som.SOMHandler attribute) (cytoflowgui.op_plugins.tsne.tSNEHandler attribute) (cytoflowgui.view_plugins.parallel_coords.ParallelCoordinatesHandler attribute) (cytoflowgui.view_plugins.radviz.RadvizHandler attribute) remove_control (cytoflowgui.op_plugins.color_translation.ColorTranslationHandler attribute) remove_function (cytoflowgui.op_plugins.multi_channel_stat.MultiChannelStatisticHandler attribute) remove_gate (cytoflowgui.op_plugins.hierarchy.HierarchyHandler attribute) REMOVE_ITEMS (cytoflowgui.workflow.workflow.Msg attribute) remove_subset (cytoflowgui.op_plugins.category.CategoryHandler attribute) remove_tubes (cytoflowgui.import_dialog.ExperimentDialogHandler attribute) Removed (class in cytoflow.utility.custom_traits) resample() (in module cytoflow.utility.consensus) resample_frac (cytoflow.operations.som.SOMOp attribute) reset_channels() (cytoflowgui.workflow.operations.import_op.ImportWorkflowOp method) reset_channels_event (cytoflowgui.op_plugins.import_op.ImportHandler attribute) RESIZE_EVENT (cytoflowgui.matplotlib_backend_local.Msg attribute) (cytoflowgui.matplotlib_backend_remote.Msg attribute) resizeEvent() (cytoflowgui.matplotlib_backend_local.FigureCanvasQTAggLocal method) RESULT (cytoflowgui.workflow.Changed attribute) result (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) row_facet (cytoflow.views.table.TableView attribute) run() (cytoflowgui.cytoflow_application.CytoflowApplication method) (cytoflowgui.workflow.workflow.RemoteWorkflow method) RUN_ALL (cytoflowgui.workflow.workflow.Msg attribute) run_all() (cytoflowgui.workflow.workflow.LocalWorkflow method) run_gui() (in module cytoflowgui.run)

S

sample (cytoflow.operations.som.SOMOp attribute) (cytoflow.operations.tsne.tSNEOp attribute) samples (cytoflowgui.op_plugins.import_op.ImportHandler attribute) sanitize_identifier() (in module cytoflow.utility.util_functions) sanitize_metadata() (in module cytoflowgui.import_dialog) save_notebook() (cytoflowgui.flow_task.FlowTask method) save_to_directory() (cytoflowgui.utility.event_tracer.MultiThreadRecordContainer method) save_to_file() (cytoflowgui.utility.event_tracer.RecordContainer method) save_yaml() (in module cytoflowgui.workflow.serialization) scale (cytoflow.operations.base_op_views.Op1DView attribute) (cytoflow.operations.binning.BinningOp attribute) (cytoflow.operations.binning.BinningView attribute) (cytoflow.operations.flowclean.FlowCleanOp attribute) (cytoflow.operations.flowpeaks.FlowPeaks1DView attribute) (cytoflow.operations.flowpeaks.FlowPeaksOp attribute) (cytoflow.operations.gaussian.GaussianMixture1DView attribute) (cytoflow.operations.gaussian.GaussianMixtureOp attribute) (cytoflow.operations.kmeans.KMeans1DView attribute) (cytoflow.operations.kmeans.KMeansOp attribute) (cytoflow.operations.mst.MSTSelectionView attribute) (cytoflow.operations.pca.PCAOp attribute) (cytoflow.operations.range.RangeSelection attribute) (cytoflow.operations.register.RegistrationOp attribute) (cytoflow.operations.som.SOMOp attribute) (cytoflow.operations.threshold.ThresholdSelection attribute) (cytoflow.operations.tsne.tSNEOp attribute) (cytoflow.views.bar_chart.BarChartView attribute) (cytoflow.views.base_views.Base1DStatisticsView attribute) (cytoflow.views.base_views.Base1DView attribute) (cytoflow.views.base_views.BaseNDView attribute) (cytoflow.views.histogram.HistogramView attribute) (cytoflow.views.kde_1d.Kde1DView attribute) (cytoflow.views.matrix.MatrixView attribute) (cytoflow.views.mst.MSTView attribute) (cytoflow.views.parallel_coords.ParallelCoordinatesView attribute) (cytoflow.views.radviz.RadvizView attribute) (cytoflow.views.stats_1d.Stats1DView attribute) (cytoflow.views.violin.ViolinPlotView attribute) scale_factory() (in module cytoflow.utility.scale) ScaleEnum (class in cytoflow.utility.custom_traits) ScaleMixin (class in cytoflow.utility.scale) ScatterplotHandler (class in cytoflowgui.view_plugins.scatterplot) ScatterplotParamsHandler (class in cytoflowgui.view_plugins.scatterplot) ScatterplotPlotParams (class in cytoflowgui.workflow.views.scatterplot) ScatterplotPlugin (class in cytoflowgui.view_plugins.scatterplot) ScatterplotPolygonSelectionView (class in cytoflow.operations.polygon) ScatterplotPolygonSelectionWorkflowView (class in cytoflowgui.workflow.operations.polygon) ScatterplotQuadSelectionView (class in cytoflow.operations.quad) ScatterplotRangeSelection2DView (class in cytoflow.operations.range2d) ScatterPlotRangeSelection2DWorkflowView (class in cytoflowgui.workflow.operations.range2d) ScatterplotView (class in cytoflow.views.scatterplot) ScatterplotWorkflowView (class in cytoflowgui.workflow.views.scatterplot) segment_cutoff (cytoflow.operations.flowclean.FlowCleanOp attribute) segment_size (cytoflow.operations.flowclean.FlowCleanOp attribute) SELECT (cytoflowgui.workflow.workflow.Msg attribute) selected (cytoflowgui.editors.vertical_notebook_editor.VerticalNotebookEditor attribute) (cytoflowgui.workflow.workflow.LocalWorkflow attribute) (cytoflowgui.workflow.workflow.RemoteWorkflow attribute) selected_tubes (cytoflowgui.import_dialog.ExperimentDialogHandler attribute) selected_view_params_view() (cytoflowgui.workflow_controller.WorkflowController method) selected_view_plot_name_view() (cytoflowgui.workflow_controller.WorkflowController method) selected_view_traits_view() (cytoflowgui.workflow_controller.WorkflowController method) send_main() (cytoflowgui.workflow.workflow.LocalWorkflow method) (cytoflowgui.workflow.workflow.RemoteWorkflow method) send_thread (cytoflowgui.workflow.workflow.LocalWorkflow attribute) (cytoflowgui.workflow.workflow.RemoteWorkflow attribute) send_to_local() (cytoflowgui.matplotlib_backend_remote.FigureCanvasAggRemote method) send_to_remote() (cytoflowgui.matplotlib_backend_local.FigureCanvasQTAggLocal method) SentinelRecord (class in cytoflowgui.utility.event_tracer) set() (cytoflow.utility.custom_traits.Deprecated method) (cytoflow.utility.custom_traits.Removed method) set_default_locators_and_formatters() (cytoflow.utility.hlog_scale.MatplotlibHlogScale method) (cytoflow.utility.logicle_scale.MatplotlibLogicleScale method) set_default_scale() (in module cytoflow.utility.scale) set_from_fcs() (cytoflow.operations.bleedthrough_linear.BleedthroughLinearOp method) set_params() (cytoflow.utility.hlog_scale.HlogMajorLocator method) (cytoflow.utility.hlog_scale.HlogMinorLocator method) (cytoflow.utility.logicle_scale.LogicleMajorLocator method) (cytoflow.utility.logicle_scale.LogicleMinorLocator method) set_working() (cytoflowgui.matplotlib_backend_remote.FigureCanvasAggRemote method) setFixedHeight() (cytoflowgui.util.HintedMainWindow method) (cytoflowgui.util.HintedWidget method) setFixedWidth() (cytoflowgui.util.HintedMainWindow method) (cytoflowgui.util.HintedWidget method) setHigh() (cytoflowgui.editors.range_slider.RangeSlider method) setLow() (cytoflowgui.editors.range_slider.RangeSlider method) setUp() (cytoflow.utility.minisom.TestMinisom method) setup_event (cytoflowgui.op_plugins.import_op.ImportHandler attribute) short_name (cytoflowgui.op_plugins.autofluorescence.AutofluorescencePlugin attribute) (cytoflowgui.op_plugins.bead_calibration.BeadCalibrationPlugin attribute) (cytoflowgui.op_plugins.binning.BinningPlugin attribute) (cytoflowgui.op_plugins.bleedthrough_linear.BleedthroughLinearPlugin attribute) (cytoflowgui.op_plugins.category.CategoryPlugin attribute) (cytoflowgui.op_plugins.channel_stat.ChannelStatisticPlugin attribute) (cytoflowgui.op_plugins.color_translation.ColorTranslationPlugin attribute) (cytoflowgui.op_plugins.density.DensityGatePlugin attribute) (cytoflowgui.op_plugins.flowclean.FlowCleanPlugin attribute) (cytoflowgui.op_plugins.flowpeaks.FlowPeaksPlugin attribute) (cytoflowgui.op_plugins.gaussian_1d.GaussianMixture1DPlugin attribute) (cytoflowgui.op_plugins.gaussian_2d.GaussianMixture2DPlugin attribute) (cytoflowgui.op_plugins.hierarchy.HierarchyPlugin attribute) (cytoflowgui.op_plugins.i_op_plugin.IOperationPlugin attribute) (cytoflowgui.op_plugins.import_op.ImportPlugin attribute) (cytoflowgui.op_plugins.kmeans.KMeansPlugin attribute) (cytoflowgui.op_plugins.merge_stat.MergeStatisticsPlugin attribute) (cytoflowgui.op_plugins.mst.MSTPlugin attribute) (cytoflowgui.op_plugins.multi_channel_stat.MultiChannelStatisticPlugin attribute) (cytoflowgui.op_plugins.pca.PCAPlugin attribute) (cytoflowgui.op_plugins.polygon.PolygonPlugin attribute) (cytoflowgui.op_plugins.quad.QuadPlugin attribute) (cytoflowgui.op_plugins.range.RangePlugin attribute) (cytoflowgui.op_plugins.range2d.Range2DPlugin attribute) (cytoflowgui.op_plugins.ratio.RatioPlugin attribute) (cytoflowgui.op_plugins.register.RegistrationPlugin attribute) (cytoflowgui.op_plugins.som.SOMPlugin attribute) (cytoflowgui.op_plugins.tasbe.TasbePlugin attribute) (cytoflowgui.op_plugins.threshold.ThresholdPlugin attribute) (cytoflowgui.op_plugins.tsne.tSNEPlugin attribute) (cytoflowgui.op_plugins.xform_stat.TransformStatisticPlugin attribute) (cytoflowgui.view_plugins.bar_chart.BarChartPlugin attribute) (cytoflowgui.view_plugins.density.DensityPlugin attribute) (cytoflowgui.view_plugins.export_fcs.ExportFCSPlugin attribute) (cytoflowgui.view_plugins.histogram.HistogramPlugin attribute) (cytoflowgui.view_plugins.histogram_2d.Histogram2DPlugin attribute) (cytoflowgui.view_plugins.i_view_plugin.IViewPlugin attribute) (cytoflowgui.view_plugins.kde_1d.Kde1DPlugin attribute) (cytoflowgui.view_plugins.kde_2d.Kde2DPlugin attribute) (cytoflowgui.view_plugins.long_table.LongTablePlugin attribute) (cytoflowgui.view_plugins.matrix.MatrixPlugin attribute) (cytoflowgui.view_plugins.mst.MSTPlugin attribute) (cytoflowgui.view_plugins.parallel_coords.ParallelCoordinatesPlugin attribute) (cytoflowgui.view_plugins.radviz.RadvizPlugin attribute) (cytoflowgui.view_plugins.scatterplot.ScatterplotPlugin attribute) (cytoflowgui.view_plugins.stats_1d.Stats1DPlugin attribute) (cytoflowgui.view_plugins.stats_2d.Stats2DPlugin attribute) (cytoflowgui.view_plugins.table.TablePlugin attribute) (cytoflowgui.view_plugins.violin.ViolinPlotPlugin attribute) should_apply() (cytoflowgui.workflow.operations.autofluorescence.AutofluorescenceWorkflowOp method) (cytoflowgui.workflow.operations.operation_base.IWorkflowOperation method) (cytoflowgui.workflow.operations.operation_base.WorkflowOperation method) should_clear_estimate() (cytoflowgui.workflow.operations.autofluorescence.AutofluorescenceWorkflowOp method) (cytoflowgui.workflow.operations.bead_calibration.BeadCalibrationWorkflowOp method) (cytoflowgui.workflow.operations.bleedthrough_linear.BleedthroughLinearWorkflowOp method) (cytoflowgui.workflow.operations.color_translation.ColorTranslationWorkflowOp method) (cytoflowgui.workflow.operations.operation_base.IWorkflowOperation method) (cytoflowgui.workflow.operations.operation_base.WorkflowOperation method) (cytoflowgui.workflow.operations.register.RegistrationWorkflowOp method) (cytoflowgui.workflow.operations.tasbe.TasbeWorkflowOp method)

should_plot() (cytoflowgui.workflow.operations.autofluorescence.AutofluorescenceWorkflowView method) (cytoflowgui.workflow.operations.bead_calibration.BeadCalibrationWorkflowView method) (cytoflowgui.workflow.operations.bleedthrough_linear.BleedthroughLinearWorkflowView method) (cytoflowgui.workflow.operations.color_translation.ColorTranslationWorkflowView method) (cytoflowgui.workflow.operations.density.DensityGateWorkflowView method) (cytoflowgui.workflow.operations.som.SOMWorkflowView method) (cytoflowgui.workflow.operations.tasbe.TasbeWorkflowView method) (cytoflowgui.workflow.views.view_base.IWorkflowView method) (cytoflowgui.workflow.views.view_base.WorkflowView method) show() (in module cytoflowgui.matplotlib_backend_remote) show_advanced (cytoflowgui.op_plugins.density.DensityGateHandler attribute) (cytoflowgui.op_plugins.som.SOMHandler attribute) show_advanced_options (cytoflowgui.op_plugins.flowclean.FlowCleanHandler attribute) show_error() (cytoflowgui.cytoflow_application.CytoflowApplication method) show_toolbar_names() (cytoflowgui.flow_task.FlowTask method) (cytoflowgui.view_pane.ViewDockPane method) (cytoflowgui.workflow_pane.WorkflowDockPane method) show_warning() (cytoflowgui.cytoflow_application.CytoflowApplication method) shown_warnings (cytoflowgui.cytoflow_application.CytoflowApplication attribute) SHUTDOWN (cytoflowgui.workflow.workflow.Msg attribute) shutdown() (cytoflowgui.workflow.workflow.RemoteWorkflow method) shutdown_remote_process() (cytoflowgui.workflow.workflow.LocalWorkflow method) sigma (cytoflow.operations.density.DensityGateOp attribute) (cytoflow.operations.gaussian.GaussianMixtureOp attribute) (cytoflow.operations.som.SOMOp attribute) size_function (cytoflow.operations.mst.MSTSelectionView attribute) (cytoflow.views.matrix.MatrixView attribute) (cytoflow.views.mst.MSTView attribute) sizeHint() (cytoflowgui.util.HintedMainWindow method) (cytoflowgui.util.HintedWidget method) sliderOrderForMove() (cytoflowgui.editors.range_slider.RangeSlider method) sliderOrderForPaint() (cytoflowgui.editors.range_slider.RangeSlider method) SOMDiagnosticView (class in cytoflow.operations.som) SOMHandler (class in cytoflowgui.op_plugins.som) SOMOp (class in cytoflow.operations.som) SOMPlugin (class in cytoflowgui.op_plugins.som) SOMViewHandler (class in cytoflowgui.op_plugins.som) SOMWorkflowOp (class in cytoflowgui.workflow.operations.som) SOMWorkflowView (class in cytoflowgui.workflow.operations.som) source (cytoflowgui.utility.event_tracer.CallingMessageRecord attribute) Spillover (class in cytoflowgui.workflow.operations.bleedthrough_linear) spillover (cytoflow.operations.bleedthrough_linear.BleedthroughLinearOp attribute) start_remote_process() (in module cytoflowgui.run) statistic (cytoflow.operations.mst.MSTSelectionView attribute) (cytoflow.operations.xform_stat.TransformStatisticOp attribute) (cytoflow.utility.logicle_scale.LogicleScale attribute) (cytoflow.utility.scale.IScale attribute) (cytoflow.views.bar_chart.BarChartView attribute) (cytoflow.views.base_views.BaseStatisticsView attribute) (cytoflow.views.long_table.LongTableView attribute) (cytoflow.views.matrix.MatrixView attribute) (cytoflow.views.mst.MSTView attribute) (cytoflow.views.stats_1d.Stats1DView attribute) (cytoflow.views.stats_2d.Stats2DView attribute) (cytoflow.views.table.TableView attribute) (cytoflowgui.experiment_pane_model.StatisticNode attribute) StatisticNode (class in cytoflowgui.experiment_pane_model) statistics (cytoflow.experiment.Experiment attribute) Statistics (cytoflow.operations.flowpeaks.FlowPeaksOp attribute) (cytoflow.operations.gaussian.GaussianMixtureOp attribute) (cytoflow.operations.kmeans.KMeansOp attribute) (cytoflow.operations.pca.PCAOp attribute) (cytoflow.operations.som.SOMOp attribute) statistics (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) statistics_names (cytoflowgui.workflow_controller.WorkflowItemHandler attribute) StatisticsNode (class in cytoflowgui.experiment_pane_model) Stats1DHandler (class in cytoflowgui.view_plugins.stats_1d) Stats1DParamsHandler (class in cytoflowgui.view_plugins.stats_1d) Stats1DPlotParams (class in cytoflowgui.workflow.views.stats_1d) (class in cytoflowgui.workflow.views.view_base) Stats1DPlugin (class in cytoflowgui.view_plugins.stats_1d) Stats1DView (class in cytoflow.views.stats_1d) Stats1DWorkflowView (class in cytoflowgui.workflow.views.stats_1d) Stats2DHandler (class in cytoflowgui.view_plugins.stats_2d) Stats2DParamsHandler (class in cytoflowgui.view_plugins.stats_2d) Stats2DPlotParams (class in cytoflowgui.workflow.views.stats_2d) (class in cytoflowgui.workflow.views.view_base) Stats2DPlugin (class in cytoflowgui.view_plugins.stats_2d) Stats2DView (class in cytoflow.views.stats_2d) Stats2DWorkflowView (class in cytoflowgui.workflow.views.stats_2d) status (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) stop() (cytoflowgui.cytoflow_application.CytoflowApplication method) StringNode (class in cytoflowgui.experiment_pane_model) style (cytoflow.operations.mst.MSTSelectionView attribute) (cytoflow.views.matrix.MatrixView attribute) (cytoflow.views.mst.MSTView attribute) (cytoflowgui.editors.subset_list_editor.SubsetListEditor attribute) subcolumn_facet (cytoflow.views.table.TableView attribute) subrow_facet (cytoflow.views.table.TableView attribute) subset (cytoflow.operations.binning.BinningView attribute) (cytoflow.operations.bleedthrough_linear.BleedthroughLinearDiagnostic attribute) (cytoflow.operations.channel_stat.ChannelStatisticOp attribute) (cytoflow.operations.color_translation.ColorTranslationDiagnostic attribute) (cytoflow.operations.density.DensityGateView attribute) (cytoflow.operations.flowpeaks.FlowPeaks1DView attribute) (cytoflow.operations.flowpeaks.FlowPeaks2DDensityView attribute) (cytoflow.operations.flowpeaks.FlowPeaks2DView attribute) (cytoflow.operations.frame_stat.FrameStatisticOp attribute) (cytoflow.operations.gaussian.GaussianMixture1DView attribute) (cytoflow.operations.gaussian.GaussianMixture2DView attribute) (cytoflow.operations.kmeans.KMeans1DView attribute) (cytoflow.operations.kmeans.KMeans2DView attribute) (cytoflow.operations.mst.MSTSelectionView attribute) (cytoflow.operations.polygon.DensityPolygonSelectionView attribute) (cytoflow.operations.polygon.ScatterplotPolygonSelectionView attribute) (cytoflow.operations.quad.DensityQuadSelectionView attribute) (cytoflow.operations.quad.ScatterplotQuadSelectionView attribute) (cytoflow.operations.range.RangeSelection attribute) (cytoflow.operations.range2d.DensityRangeSelection2DView attribute) (cytoflow.operations.range2d.ScatterplotRangeSelection2DView attribute) (cytoflow.operations.register.RegistrationOp attribute) (cytoflow.operations.threshold.ThresholdSelection attribute) (cytoflow.views.bar_chart.BarChartView attribute) (cytoflow.views.base_views.BaseDataView attribute) (cytoflow.views.base_views.BaseStatisticsView attribute) (cytoflow.views.densityplot.DensityView attribute) (cytoflow.views.export_fcs.ExportFCS attribute) (cytoflow.views.histogram.HistogramView attribute) (cytoflow.views.histogram_2d.Histogram2DView attribute) (cytoflow.views.kde_1d.Kde1DView attribute) (cytoflow.views.kde_2d.Kde2DView attribute) (cytoflow.views.long_table.LongTableView attribute) (cytoflow.views.matrix.MatrixView attribute) (cytoflow.views.mst.MSTView attribute) (cytoflow.views.parallel_coords.ParallelCoordinatesView attribute) (cytoflow.views.radviz.RadvizView attribute) (cytoflow.views.scatterplot.ScatterplotView attribute) (cytoflow.views.stats_1d.Stats1DView attribute) (cytoflow.views.stats_2d.Stats2DView attribute) (cytoflow.views.table.TableView attribute) (cytoflow.views.violin.ViolinPlotView attribute) subset() (cytoflow.experiment.Experiment method) subset_handler_factory() (in module cytoflowgui.subset_controllers) subset_view() (cytoflowgui.subset_controllers.BoolSubsetHandler method) (cytoflowgui.subset_controllers.CategorySubsetHandler method) (cytoflowgui.subset_controllers.RangeSubsetHandler method) SubsetListEditor (class in cytoflowgui.editors.subset_list_editor) subsets (cytoflow.operations.category.CategoryOp attribute)

T

table_editor (cytoflowgui.import_dialog.ExperimentDialogHandler attribute) TableHandler (class in cytoflowgui.view_plugins.table) TablePlugin (class in cytoflowgui.view_plugins.table) TableView (class in cytoflow.views.table) TableWorkflowView (class in cytoflowgui.workflow.views.table) TabListEditor (class in cytoflowgui.editors.tab_list_editor) TasbeHandler (class in cytoflowgui.op_plugins.tasbe) TasbePlugin (class in cytoflowgui.op_plugins.tasbe) TasbeViewHandler (class in cytoflowgui.op_plugins.tasbe) TasbeWorkflowOp (class in cytoflowgui.workflow.operations.tasbe) TasbeWorkflowView (class in cytoflowgui.workflow.operations.tasbe) task (cytoflowgui.export_task.ExportPane attribute) (cytoflowgui.help_pane.HelpDockPane attribute) (cytoflowgui.view_pane.ViewDockPane attribute) TASKS (cytoflowgui.export_task.ExportFigurePlugin attribute) (cytoflowgui.flow_task.FlowTaskPlugin attribute) test_activate() (cytoflow.utility.minisom.TestMinisom method) test_activation_reponse() (cytoflow.utility.minisom.TestMinisom method) test_asymptotic_decay_function() (cytoflow.utility.minisom.TestMinisom method) test_bubble() (cytoflow.utility.minisom.TestMinisom method) test_callable_activation_distance() (cytoflow.utility.minisom.TestMinisom method) test_chebyshev_distance() (cytoflow.utility.minisom.TestMinisom method) test_check_input_len() (cytoflow.utility.minisom.TestMinisom method) test_cosine_distance() (cytoflow.utility.minisom.TestMinisom method) test_decay_function_value() (cytoflow.utility.minisom.TestMinisom method) test_distance_from_weights() (cytoflow.utility.minisom.TestMinisom method) test_distance_map() (cytoflow.utility.minisom.TestMinisom method) test_distortion_measure() (cytoflow.utility.minisom.TestMinisom method) test_euclidean_distance() (cytoflow.utility.minisom.TestMinisom method) test_fast_norm() (cytoflow.utility.minisom.TestMinisom method) test_gaussian() (cytoflow.utility.minisom.TestMinisom method) test_hexagonal_topographic_error() (cytoflow.utility.minisom.TestMinisom method) test_inverse_decay_to_one_function() (cytoflow.utility.minisom.TestMinisom method) test_inverse_decay_to_zero_function() (cytoflow.utility.minisom.TestMinisom method) test_labels_map() (cytoflow.utility.minisom.TestMinisom method) test_linear_decay_to_one_function() (cytoflow.utility.minisom.TestMinisom method) test_linear_decay_to_zero_function() (cytoflow.utility.minisom.TestMinisom method) test_manhattan_distance() (cytoflow.utility.minisom.TestMinisom method) test_mexican_hat() (cytoflow.utility.minisom.TestMinisom method) test_pca_weights_init() (cytoflow.utility.minisom.TestMinisom method) test_pickling() (cytoflow.utility.minisom.TestMinisom method) test_quantization() (cytoflow.utility.minisom.TestMinisom method) test_quantization_error() (cytoflow.utility.minisom.TestMinisom method) test_random_seed() (cytoflow.utility.minisom.TestMinisom method) test_random_weights_init() (cytoflow.utility.minisom.TestMinisom method) test_sigma_decay_function_value() (cytoflow.utility.minisom.TestMinisom method) test_topographic_error() (cytoflow.utility.minisom.TestMinisom method) test_train_batch() (cytoflow.utility.minisom.TestMinisom method) test_train_fixed_points() (cytoflow.utility.minisom.TestMinisom method) test_train_random() (cytoflow.utility.minisom.TestMinisom method) test_train_use_epochs() (cytoflow.utility.minisom.TestMinisom method) test_triangle() (cytoflow.utility.minisom.TestMinisom method) test_unavailable_distance_function() (cytoflow.utility.minisom.TestMinisom method) test_unavailable_neigh_function() (cytoflow.utility.minisom.TestMinisom method) test_use_epochs_variables() (cytoflow.utility.minisom.TestMinisom method) test_win_map() (cytoflow.utility.minisom.TestMinisom method) test_win_map_indices() (cytoflow.utility.minisom.TestMinisom method) TestMinisom (class in cytoflow.utility.minisom) threshold (cytoflow.operations.threshold.ThresholdOp attribute) ThresholdHandler (class in cytoflowgui.op_plugins.threshold) ThresholdOp (class in cytoflow.operations.threshold) ThresholdPlugin (class in cytoflowgui.op_plugins.threshold) ThresholdSelection (class in cytoflow.operations.threshold) ThresholdSelectionView (class in cytoflowgui.workflow.operations.threshold) ThresholdViewHandler (class in cytoflowgui.op_plugins.threshold) ThresholdWorkflowOp (class in cytoflowgui.workflow.operations.threshold) tick_values() (cytoflow.utility.hlog_scale.HlogMajorLocator method) (cytoflow.utility.hlog_scale.HlogMinorLocator method) (cytoflow.utility.logicle_scale.LogicleMajorLocator method) (cytoflow.utility.logicle_scale.LogicleMinorLocator method) time (cytoflowgui.utility.event_tracer.CallingMessageRecord attribute) (cytoflowgui.utility.event_tracer.ChangeMessageRecord attribute) (cytoflowgui.utility.event_tracer.ExitMessageRecord attribute) time_channel (cytoflow.operations.flowclean.FlowCleanOp attribute) tno_allows_children() (cytoflowgui.experiment_pane_model.ChannelNode method) (cytoflowgui.experiment_pane_model.ChannelsNode method) (cytoflowgui.experiment_pane_model.ConditionNode method) (cytoflowgui.experiment_pane_model.ConditionsNode method) (cytoflowgui.experiment_pane_model.StatisticNode method) (cytoflowgui.experiment_pane_model.StatisticsNode method) (cytoflowgui.experiment_pane_model.StringNode method) (cytoflowgui.experiment_pane_model.WorkflowItemNode method)

tno_get_children() (cytoflowgui.experiment_pane_model.ChannelNode method) (cytoflowgui.experiment_pane_model.ChannelsNode method) (cytoflowgui.experiment_pane_model.ConditionNode method) (cytoflowgui.experiment_pane_model.ConditionsNode method) (cytoflowgui.experiment_pane_model.StatisticNode method) (cytoflowgui.experiment_pane_model.StatisticsNode method) (cytoflowgui.experiment_pane_model.WorkflowItemNode method) tno_get_icon() (cytoflowgui.experiment_pane_model.ChannelNode method) (cytoflowgui.experiment_pane_model.ChannelsNode method) (cytoflowgui.experiment_pane_model.ConditionNode method) (cytoflowgui.experiment_pane_model.ConditionsNode method) (cytoflowgui.experiment_pane_model.StatisticNode method) (cytoflowgui.experiment_pane_model.StatisticsNode method) (cytoflowgui.experiment_pane_model.StringNode method) tno_get_label() (cytoflowgui.experiment_pane_model.ChannelNode method) (cytoflowgui.experiment_pane_model.ChannelsNode method) (cytoflowgui.experiment_pane_model.ConditionNode method) (cytoflowgui.experiment_pane_model.ConditionsNode method) (cytoflowgui.experiment_pane_model.StatisticNode method) (cytoflowgui.experiment_pane_model.StatisticsNode method) (cytoflowgui.experiment_pane_model.StringNode method) (cytoflowgui.experiment_pane_model.WorkflowItemNode method) tno_get_menu() (cytoflowgui.experiment_pane_model.ChannelNode method) (cytoflowgui.experiment_pane_model.ChannelsNode method) (cytoflowgui.experiment_pane_model.ConditionNode method) (cytoflowgui.experiment_pane_model.ConditionsNode method) (cytoflowgui.experiment_pane_model.StatisticNode method) (cytoflowgui.experiment_pane_model.StatisticsNode method) (cytoflowgui.experiment_pane_model.StringNode method) (cytoflowgui.experiment_pane_model.WorkflowItemNode method) tno_has_children() (cytoflowgui.experiment_pane_model.ChannelNode method) (cytoflowgui.experiment_pane_model.ChannelsNode method) (cytoflowgui.experiment_pane_model.ConditionNode method) (cytoflowgui.experiment_pane_model.ConditionsNode method) (cytoflowgui.experiment_pane_model.StatisticNode method) (cytoflowgui.experiment_pane_model.StatisticsNode method) (cytoflowgui.experiment_pane_model.StringNode method) (cytoflowgui.experiment_pane_model.WorkflowItemNode method) ToggleButtonEditor (class in cytoflowgui.editors.toggle_button) tol (cytoflow.operations.flowpeaks.FlowPeaksOp attribute) tool_bars (cytoflowgui.flow_task.FlowTask attribute) topographic_error() (cytoflow.utility.minisom.MiniSom method) train() (cytoflow.utility.minisom.MiniSom method) train_batch() (cytoflow.utility.minisom.MiniSom method) train_random() (cytoflow.utility.minisom.MiniSom method) trait_context() (cytoflowgui.workflow.operations.category.CategoryOpSubset method) (cytoflowgui.workflow.operations.category.CategoryWorkflowOp method) trait_view() (cytoflowgui.workflow.workflow_item.WorkflowItem method) traits_eq() (in module cytoflowgui.workflow.serialization) traits_hash() (in module cytoflowgui.workflow.serialization) traits_repr() (in module cytoflowgui.workflow.serialization) traits_str() (in module cytoflowgui.workflow.serialization) traits_view (cytoflowgui.help_pane.HelpDockPane attribute) transform_non_affine() (cytoflow.utility.hlog_scale.MatplotlibHlogScale.HlogTransform method) (cytoflow.utility.hlog_scale.MatplotlibHlogScale.InvertedLogicleTransform method) (cytoflow.utility.logicle_scale.MatplotlibLogicleScale.InvertedLogicleTransform method) (cytoflow.utility.logicle_scale.MatplotlibLogicleScale.LogicleTransform method) transform_y() (cytoflow.utility.kneed.KneeLocator static method) TransformStatisticHandler (class in cytoflowgui.op_plugins.xform_stat) TransformStatisticOp (class in cytoflow.operations.xform_stat) TransformStatisticPlugin (class in cytoflowgui.op_plugins.xform_stat) TransformStatisticWorkflowOp (class in cytoflowgui.workflow.operations.xform_stat) TranslationControl (class in cytoflowgui.workflow.operations.tasbe) TranslationControlHandler (class in cytoflowgui.op_plugins.tasbe) tree_node (cytoflowgui.workflow_controller.WorkflowItemHandler attribute) tSNEHandler (class in cytoflowgui.op_plugins.tsne) tSNEOp (class in cytoflow.operations.tsne) tSNEPlugin (class in cytoflowgui.op_plugins.tsne) tSNEWorkflowOp (class in cytoflowgui.workflow.operations.tsne) Tube (class in cytoflow.operations.import_op) (class in cytoflowgui.import_dialog) tube_statistics (cytoflow.operations.flowclean.FlowCleanOp attribute) tube_status (cytoflow.operations.flowclean.FlowCleanOp attribute) tube_traits (cytoflowgui.import_dialog.ExperimentDialogModel attribute) tube_traits_dict (cytoflowgui.import_dialog.ExperimentDialogModel attribute) tubes (cytoflow.operations.import_op.ImportOp attribute) (cytoflowgui.import_dialog.ExperimentDialogModel attribute) TubeTrait (class in cytoflowgui.import_dialog) type (cytoflowgui.import_dialog.TubeTrait attribute)

U

ui (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute) UniquePriorityQueue (class in cytoflowgui.workflow.workflow) Unit (class in cytoflowgui.workflow.operations.bead_calibration) UnitFloat (class in cytoflow.utility.custom_traits) UnitHandler (class in cytoflowgui.op_plugins.bead_calibration) (class in cytoflowgui.op_plugins.tasbe) units (cytoflow.operations.bead_calibration.BeadCalibrationOp attribute)

update() (cytoflow.utility.minisom.MiniSom method) update_consensus_clusters() (cytoflow.operations.som.SOMOp method) update_import_op() (cytoflowgui.import_dialog.ExperimentDialogModel method) UPDATE_OP (cytoflowgui.workflow.workflow.Msg attribute) UPDATE_VIEW (cytoflowgui.workflow.workflow.Msg attribute) UPDATE_WI (cytoflowgui.workflow.workflow.Msg attribute) updating (cytoflowgui.import_dialog.ExperimentDialogHandler attribute)

V

valid (cytoflowgui.import_dialog.ExperimentDialogModel attribute) VALID (cytoflowgui.workflow.operations.tasbe.Progress attribute) valid_clustering_obj() (in module cytoflow.utility.consensus) validate() (cytoflow.utility.custom_traits.CFloatOrNone method) (cytoflow.utility.custom_traits.CIntOrNone method) (cytoflow.utility.custom_traits.FloatOrNone method) (cytoflow.utility.custom_traits.IntOrNone method) (cytoflow.utility.custom_traits.PositiveCFloat method) (cytoflow.utility.custom_traits.PositiveCInt method) (cytoflow.utility.custom_traits.PositiveFloat method) (cytoflow.utility.custom_traits.PositiveInt method) (cytoflow.utility.custom_traits.UnitFloat method) (cytoflowgui.import_dialog.ConvertingBool method) (cytoflowgui.workflow.operations.import_op.ValidPythonIdentifier method) ValidPythonIdentifier (class in cytoflowgui.workflow.operations.import_op) value (cytoflowgui.editors.toggle_button.ToggleButtonEditor attribute) (cytoflowgui.experiment_pane_model.StringNode attribute) values (cytoflowgui.op_plugins.hierarchy.GateHandler attribute) ValuesBoundsEditor (class in cytoflowgui.editors.value_bounds_editor) variable (cytoflow.operations.mst.MSTSelectionView attribute) (cytoflow.views.bar_chart.BarChartView attribute) (cytoflow.views.base_views.Base1DStatisticsView attribute) (cytoflow.views.base_views.Base2DStatisticsView attribute) (cytoflow.views.matrix.MatrixView attribute) (cytoflow.views.mst.MSTView attribute) (cytoflow.views.stats_1d.Stats1DView attribute) (cytoflow.views.stats_2d.Stats2DView attribute) (cytoflow.views.violin.ViolinPlotView attribute) variable_scale (cytoflow.views.stats_1d.Stats1DView attribute) VerticalListEditor (class in cytoflowgui.editors.vertical_list_editor) VerticalNotebook (class in cytoflowgui.editors.vertical_notebook) VerticalNotebookEditor (class in cytoflowgui.editors.vertical_notebook_editor) VerticalNotebookPage (class in cytoflowgui.editors.vertical_notebook) vertices (cytoflow.operations.polygon.PolygonOp attribute) view (cytoflowgui.editors.vertical_notebook_editor.VerticalNotebookEditor attribute) (cytoflowgui.preferences.CytoflowPreferencesPane attribute) VIEW (cytoflowgui.workflow.Changed attribute) view_error (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) view_error_trait (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) view_id (cytoflowgui.op_plugins.autofluorescence.AutofluorescencePlugin attribute) (cytoflowgui.op_plugins.bead_calibration.BeadCalibrationPlugin attribute) (cytoflowgui.op_plugins.binning.BinningPlugin attribute) (cytoflowgui.op_plugins.bleedthrough_linear.BleedthroughLinearPlugin attribute) (cytoflowgui.op_plugins.category.CategoryPlugin attribute) (cytoflowgui.op_plugins.channel_stat.ChannelStatisticPlugin attribute) (cytoflowgui.op_plugins.color_translation.ColorTranslationPlugin attribute) (cytoflowgui.op_plugins.density.DensityGatePlugin attribute) (cytoflowgui.op_plugins.flowclean.FlowCleanPlugin attribute) (cytoflowgui.op_plugins.flowpeaks.FlowPeaksPlugin attribute) (cytoflowgui.op_plugins.gaussian_1d.GaussianMixture1DPlugin attribute) (cytoflowgui.op_plugins.gaussian_2d.GaussianMixture2DPlugin attribute) (cytoflowgui.op_plugins.hierarchy.HierarchyPlugin attribute) (cytoflowgui.op_plugins.import_op.ImportPlugin attribute) (cytoflowgui.op_plugins.kmeans.KMeansPlugin attribute) (cytoflowgui.op_plugins.merge_stat.MergeStatisticsPlugin attribute) (cytoflowgui.op_plugins.mst.MSTPlugin attribute) (cytoflowgui.op_plugins.multi_channel_stat.MultiChannelStatisticPlugin attribute) (cytoflowgui.op_plugins.pca.PCAPlugin attribute) (cytoflowgui.op_plugins.polygon.PolygonPlugin attribute) (cytoflowgui.op_plugins.quad.QuadPlugin attribute) (cytoflowgui.op_plugins.range.RangePlugin attribute) (cytoflowgui.op_plugins.range2d.Range2DPlugin attribute) (cytoflowgui.op_plugins.ratio.RatioPlugin attribute) (cytoflowgui.op_plugins.register.RegistrationPlugin attribute) (cytoflowgui.op_plugins.som.SOMPlugin attribute) (cytoflowgui.op_plugins.tasbe.TasbePlugin attribute) (cytoflowgui.op_plugins.threshold.ThresholdPlugin attribute) (cytoflowgui.op_plugins.tsne.tSNEPlugin attribute) (cytoflowgui.op_plugins.xform_stat.TransformStatisticPlugin attribute) (cytoflowgui.view_plugins.bar_chart.BarChartPlugin attribute) (cytoflowgui.view_plugins.density.DensityPlugin attribute) (cytoflowgui.view_plugins.export_fcs.ExportFCSPlugin attribute) (cytoflowgui.view_plugins.histogram.HistogramPlugin attribute) (cytoflowgui.view_plugins.histogram_2d.Histogram2DPlugin attribute) (cytoflowgui.view_plugins.i_view_plugin.IViewPlugin attribute) (cytoflowgui.view_plugins.kde_1d.Kde1DPlugin attribute) (cytoflowgui.view_plugins.kde_2d.Kde2DPlugin attribute) (cytoflowgui.view_plugins.long_table.LongTablePlugin attribute) (cytoflowgui.view_plugins.matrix.MatrixPlugin attribute) (cytoflowgui.view_plugins.mst.MSTPlugin attribute) (cytoflowgui.view_plugins.parallel_coords.ParallelCoordinatesPlugin attribute) (cytoflowgui.view_plugins.radviz.RadvizPlugin attribute) (cytoflowgui.view_plugins.scatterplot.ScatterplotPlugin attribute) (cytoflowgui.view_plugins.stats_1d.Stats1DPlugin attribute) (cytoflowgui.view_plugins.stats_2d.Stats2DPlugin attribute) (cytoflowgui.view_plugins.table.TablePlugin attribute) (cytoflowgui.view_plugins.violin.ViolinPlotPlugin attribute)

view_limits() (cytoflow.utility.hlog_scale.HlogMajorLocator method) (cytoflow.utility.logicle_scale.LogicleMajorLocator method) (cytoflow.utility.logicle_scale.LogicleMinorLocator method) view_pane (cytoflowgui.flow_task.FlowTask attribute) view_params_view() (cytoflowgui.workflow_controller.WorkflowItemHandler method) view_plot_name_view() (cytoflowgui.workflow_controller.WorkflowItemHandler method) view_plugins (cytoflowgui.flow_task.FlowTask attribute) (cytoflowgui.help_pane.HelpDockPane attribute) (cytoflowgui.view_pane.ViewDockPane attribute) (cytoflowgui.workflow_controller.WorkflowController attribute) (cytoflowgui.workflow_controller.WorkflowItemHandler attribute) view_traits_view() (cytoflowgui.workflow_controller.WorkflowItemHandler method) view_warning (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) view_warning_trait (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) ViewDockPane (class in cytoflowgui.view_pane) ViewHandler (class in cytoflowgui.view_plugins.view_plugin_base) ViewPluginManager (class in cytoflowgui.view_plugins.i_view_plugin) views (cytoflowgui.workflow.workflow_item.WorkflowItem attribute) ViolinHandler (class in cytoflowgui.view_plugins.violin) ViolinParamsHandler (class in cytoflowgui.view_plugins.violin) ViolinPlotParams (class in cytoflowgui.workflow.views.violin) ViolinPlotPlugin (class in cytoflowgui.view_plugins.violin) ViolinPlotView (class in cytoflow.views.violin) ViolinPlotWorkflowView (class in cytoflowgui.workflow.views.violin) visible (cytoflowgui.experiment_pane.ExperimentBrowserDockPane attribute) (cytoflowgui.export_task.ExportPane attribute) (cytoflowgui.view_pane.PlotParamsPane attribute)

W

W (cytoflow.utility.logicle_scale.LogicleScale attribute) when (cytoflowgui.editors.subset_list_editor.SubsetListEditor attribute) whiten (cytoflow.operations.pca.PCAOp attribute) wi (cytoflowgui.experiment_pane_model.ChannelNode attribute) (cytoflowgui.experiment_pane_model.ChannelsNode attribute) (cytoflowgui.experiment_pane_model.ConditionNode attribute) (cytoflowgui.experiment_pane_model.ConditionsNode attribute) (cytoflowgui.experiment_pane_model.StatisticNode attribute) (cytoflowgui.experiment_pane_model.StatisticsNode attribute) (cytoflowgui.experiment_pane_model.WorkflowItemNode attribute) wi_sync() (cytoflowgui.workflow.workflow.LocalWorkflow method) wi_waitfor() (cytoflowgui.workflow.workflow.LocalWorkflow method) width (cytoflow.operations.som.SOMOp attribute) (cytoflowgui.export_task.ExportTask attribute) win_map() (cytoflow.utility.minisom.MiniSom method) winner() (cytoflow.utility.minisom.MiniSom method) workflow (cytoflowgui.workflow.workflow.LocalWorkflow attribute) (cytoflowgui.workflow.workflow.RemoteWorkflow attribute) (cytoflowgui.workflow.workflow_item.WorkflowItem attribute)

workflow_handlers (cytoflowgui.workflow_controller.WorkflowController attribute) workflow_pane (cytoflowgui.flow_task.FlowTask attribute) workflow_traits_view() (cytoflowgui.workflow_controller.WorkflowController method) WorkflowByView (class in cytoflowgui.workflow.views.view_base) WorkflowController (class in cytoflowgui.workflow_controller) WorkflowDockPane (class in cytoflowgui.workflow_pane) WorkflowFacetView (class in cytoflowgui.workflow.views.view_base) WorkflowItem (class in cytoflowgui.workflow.workflow_item) WorkflowItemHandler (class in cytoflowgui.workflow_controller) WorkflowItemNode (class in cytoflowgui.experiment_pane_model) WorkflowOperation (class in cytoflowgui.workflow.operations.operation_base) WorkflowView (class in cytoflowgui.workflow.views.view_base) WORKING (cytoflowgui.matplotlib_backend_local.Msg attribute) (cytoflowgui.matplotlib_backend_remote.Msg attribute) write_fcs() (in module cytoflow.utility.fcswrite)

X

xchannel (cytoflow.operations.base_op_views.Op2DView attribute) (cytoflow.operations.density.DensityGateOp attribute) (cytoflow.operations.density.DensityGateView attribute) (cytoflow.operations.flowpeaks.FlowPeaks2DDensityView attribute) (cytoflow.operations.flowpeaks.FlowPeaks2DView attribute) (cytoflow.operations.gaussian.GaussianMixture2DView attribute) (cytoflow.operations.kmeans.KMeans2DView attribute) (cytoflow.operations.polygon.DensityPolygonSelectionView attribute) (cytoflow.operations.polygon.ScatterplotPolygonSelectionView attribute) (cytoflow.operations.quad.DensityQuadSelectionView attribute) (cytoflow.operations.quad.QuadOp attribute) (cytoflow.operations.quad.ScatterplotQuadSelectionView attribute) (cytoflow.operations.range2d.DensityRangeSelection2DView attribute) (cytoflow.operations.range2d.Range2DOp attribute) (cytoflow.operations.range2d.ScatterplotRangeSelection2DView attribute) (cytoflow.views.base_views.Base2DView attribute) (cytoflow.views.densityplot.DensityView attribute) (cytoflow.views.histogram_2d.Histogram2DView attribute) (cytoflow.views.kde_2d.Kde2DView attribute) (cytoflow.views.scatterplot.ScatterplotView attribute) xerror_high (cytoflow.views.base_views.Base2DStatisticsView attribute) (cytoflow.views.stats_2d.Stats2DView attribute) xerror_low (cytoflow.views.base_views.Base2DStatisticsView attribute) (cytoflow.views.stats_2d.Stats2DView attribute) xfacet (cytoflow.operations.binning.BinningView attribute) (cytoflow.operations.density.DensityGateView attribute) (cytoflow.operations.flowpeaks.FlowPeaks1DView attribute) (cytoflow.operations.flowpeaks.FlowPeaks2DDensityView attribute) (cytoflow.operations.flowpeaks.FlowPeaks2DView attribute) (cytoflow.operations.gaussian.GaussianMixture1DView attribute) (cytoflow.operations.gaussian.GaussianMixture2DView attribute) (cytoflow.operations.kmeans.KMeans1DView attribute) (cytoflow.operations.kmeans.KMeans2DView attribute) (cytoflow.operations.polygon.DensityPolygonSelectionView attribute) (cytoflow.operations.polygon.ScatterplotPolygonSelectionView attribute) (cytoflow.operations.quad.DensityQuadSelectionView attribute) (cytoflow.operations.quad.ScatterplotQuadSelectionView attribute) (cytoflow.operations.range.RangeSelection attribute) (cytoflow.operations.range2d.DensityRangeSelection2DView attribute) (cytoflow.operations.range2d.ScatterplotRangeSelection2DView attribute) (cytoflow.operations.threshold.ThresholdSelection attribute) (cytoflow.views.bar_chart.BarChartView attribute) (cytoflow.views.base_views.BaseStatisticsView attribute) (cytoflow.views.base_views.BaseView attribute) (cytoflow.views.densityplot.DensityView attribute) (cytoflow.views.histogram.HistogramView attribute) (cytoflow.views.histogram_2d.Histogram2DView attribute) (cytoflow.views.kde_1d.Kde1DView attribute) (cytoflow.views.kde_2d.Kde2DView attribute) (cytoflow.views.matrix.MatrixView attribute) (cytoflow.views.parallel_coords.ParallelCoordinatesView attribute) (cytoflow.views.radviz.RadvizView attribute) (cytoflow.views.scatterplot.ScatterplotView attribute) (cytoflow.views.stats_1d.Stats1DView attribute) (cytoflow.views.stats_2d.Stats2DView attribute) (cytoflow.views.violin.ViolinPlotView attribute)

xfeature (cytoflow.views.base_views.Base2DStatisticsView attribute) (cytoflow.views.stats_2d.Stats2DView attribute) xhigh (cytoflow.operations.range2d.Range2DOp attribute) xlow (cytoflow.operations.range2d.Range2DOp attribute) xscale (cytoflow.operations.base_op_views.Op2DView attribute) (cytoflow.operations.density.DensityGateOp attribute) (cytoflow.operations.density.DensityGateView attribute) (cytoflow.operations.flowpeaks.FlowPeaks2DDensityView attribute) (cytoflow.operations.flowpeaks.FlowPeaks2DView attribute) (cytoflow.operations.gaussian.GaussianMixture2DView attribute) (cytoflow.operations.kmeans.KMeans2DView attribute) (cytoflow.operations.polygon.DensityPolygonSelectionView attribute) (cytoflow.operations.polygon.ScatterplotPolygonSelectionView attribute) (cytoflow.operations.quad.DensityQuadSelectionView attribute) (cytoflow.operations.quad.ScatterplotQuadSelectionView attribute) (cytoflow.operations.range2d.DensityRangeSelection2DView attribute) (cytoflow.operations.range2d.ScatterplotRangeSelection2DView attribute) (cytoflow.views.base_views.Base2DStatisticsView attribute) (cytoflow.views.base_views.Base2DView attribute) (cytoflow.views.densityplot.DensityView attribute) (cytoflow.views.histogram_2d.Histogram2DView attribute) (cytoflow.views.kde_2d.Kde2DView attribute) (cytoflow.views.scatterplot.ScatterplotView attribute) (cytoflow.views.stats_2d.Stats2DView attribute) xthreshold (cytoflow.operations.quad.QuadOp attribute)

Y

Y_HEX_CONV_FACTOR (cytoflow.utility.minisom.MiniSom attribute) ychannel (cytoflow.operations.base_op_views.Op2DView attribute) (cytoflow.operations.density.DensityGateOp attribute) (cytoflow.operations.density.DensityGateView attribute) (cytoflow.operations.flowpeaks.FlowPeaks2DDensityView attribute) (cytoflow.operations.flowpeaks.FlowPeaks2DView attribute) (cytoflow.operations.gaussian.GaussianMixture2DView attribute) (cytoflow.operations.kmeans.KMeans2DView attribute) (cytoflow.operations.polygon.DensityPolygonSelectionView attribute) (cytoflow.operations.polygon.ScatterplotPolygonSelectionView attribute) (cytoflow.operations.quad.DensityQuadSelectionView attribute) (cytoflow.operations.quad.QuadOp attribute) (cytoflow.operations.quad.ScatterplotQuadSelectionView attribute) (cytoflow.operations.range2d.DensityRangeSelection2DView attribute) (cytoflow.operations.range2d.Range2DOp attribute) (cytoflow.operations.range2d.ScatterplotRangeSelection2DView attribute) (cytoflow.views.base_views.Base2DView attribute) (cytoflow.views.densityplot.DensityView attribute) (cytoflow.views.histogram_2d.Histogram2DView attribute) (cytoflow.views.kde_2d.Kde2DView attribute) (cytoflow.views.scatterplot.ScatterplotView attribute) yerror_high (cytoflow.views.base_views.Base2DStatisticsView attribute) (cytoflow.views.stats_2d.Stats2DView attribute) yerror_low (cytoflow.views.base_views.Base2DStatisticsView attribute) (cytoflow.views.stats_2d.Stats2DView attribute) yfacet (cytoflow.operations.binning.BinningView attribute) (cytoflow.operations.density.DensityGateView attribute) (cytoflow.operations.flowpeaks.FlowPeaks1DView attribute) (cytoflow.operations.flowpeaks.FlowPeaks2DDensityView attribute) (cytoflow.operations.flowpeaks.FlowPeaks2DView attribute) (cytoflow.operations.gaussian.GaussianMixture1DView attribute) (cytoflow.operations.gaussian.GaussianMixture2DView attribute) (cytoflow.operations.kmeans.KMeans1DView attribute) (cytoflow.operations.kmeans.KMeans2DView attribute) (cytoflow.operations.polygon.DensityPolygonSelectionView attribute) (cytoflow.operations.polygon.ScatterplotPolygonSelectionView attribute) (cytoflow.operations.quad.DensityQuadSelectionView attribute) (cytoflow.operations.quad.ScatterplotQuadSelectionView attribute) (cytoflow.operations.range.RangeSelection attribute) (cytoflow.operations.range2d.DensityRangeSelection2DView attribute) (cytoflow.operations.range2d.ScatterplotRangeSelection2DView attribute) (cytoflow.operations.threshold.ThresholdSelection attribute) (cytoflow.views.bar_chart.BarChartView attribute) (cytoflow.views.base_views.BaseStatisticsView attribute) (cytoflow.views.base_views.BaseView attribute) (cytoflow.views.densityplot.DensityView attribute) (cytoflow.views.histogram.HistogramView attribute) (cytoflow.views.histogram_2d.Histogram2DView attribute) (cytoflow.views.kde_1d.Kde1DView attribute) (cytoflow.views.kde_2d.Kde2DView attribute) (cytoflow.views.matrix.MatrixView attribute) (cytoflow.views.parallel_coords.ParallelCoordinatesView attribute) (cytoflow.views.radviz.RadvizView attribute) (cytoflow.views.scatterplot.ScatterplotView attribute) (cytoflow.views.stats_1d.Stats1DView attribute) (cytoflow.views.stats_2d.Stats2DView attribute) (cytoflow.views.violin.ViolinPlotView attribute)

yfeature (cytoflow.views.base_views.Base2DStatisticsView attribute) (cytoflow.views.stats_2d.Stats2DView attribute) yhigh (cytoflow.operations.range2d.Range2DOp attribute) ylow (cytoflow.operations.range2d.Range2DOp attribute) yscale (cytoflow.operations.base_op_views.Op2DView attribute) (cytoflow.operations.density.DensityGateOp attribute) (cytoflow.operations.density.DensityGateView attribute) (cytoflow.operations.flowpeaks.FlowPeaks2DDensityView attribute) (cytoflow.operations.flowpeaks.FlowPeaks2DView attribute) (cytoflow.operations.gaussian.GaussianMixture2DView attribute) (cytoflow.operations.kmeans.KMeans2DView attribute) (cytoflow.operations.polygon.DensityPolygonSelectionView attribute) (cytoflow.operations.polygon.ScatterplotPolygonSelectionView attribute) (cytoflow.operations.quad.DensityQuadSelectionView attribute) (cytoflow.operations.quad.ScatterplotQuadSelectionView attribute) (cytoflow.operations.range2d.DensityRangeSelection2DView attribute) (cytoflow.operations.range2d.ScatterplotRangeSelection2DView attribute) (cytoflow.views.base_views.Base2DStatisticsView attribute) (cytoflow.views.base_views.Base2DView attribute) (cytoflow.views.densityplot.DensityView attribute) (cytoflow.views.histogram_2d.Histogram2DView attribute) (cytoflow.views.kde_2d.Kde2DView attribute) (cytoflow.views.scatterplot.ScatterplotView attribute) (cytoflow.views.stats_2d.Stats2DView attribute) ythreshold (cytoflow.operations.quad.QuadOp attribute)