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Cytoflow 1.3.1 documentation

  • User manual
  • Developer Manual
  • GitHub
  • User manual
  • Developer Manual
  • GitHub

Section Navigation

  • Tutorials
    • Tutorial: Quickstart
    • Tutorial: Dose-Response
    • Tutorial: Hierarchical Gating
    • Tutorial: Estimating Genome Size
    • Tutorial: Microbial Diversity
    • Tutorial: Yeast Multidimensional Induction Timecourse
    • Tutorial: Synthetic Gene Logic Network
    • Tutorial: Transcriptional Repressor Characterization
    • Tutorial: Machine Learning
    • Tutorial: Computational Cytometry
  • How-To Guides
    • HOWTO: Install Cytoflow
    • HOWTO: Import an experiment from a table
    • HOWTO: Compensate for bleedthrough
    • HOWTO: Use beads to correct for day-to-day variation
    • HOWTO: Use the TASBE workflow for calibrated flow cytometry
    • HOWTO: Export FCS files
    • HOWTO: Export plots
    • HOWTO: Use different gates for different subsets of data
    • HOWTO: Add error bars to a statistics plot
  • Users’ guides
    • Guide: Using facets to compare data sets
    • Guide: Using statistics to summarize data
    • Guide: Which measure of center should I use?
    • Guide: How can I understand the experiment structure?
  • Operation and View Gallery
    • Autofluorescence correction
    • Bead Calibration
    • Binning
    • Linear Bleedthrough Compensation
    • Categorical Gating
    • Channel statistic
    • Color Translation
    • Density Gate
    • FlowClean
    • FlowPeaks Clustering
    • Gaussian Mixture Model (1D)
    • Gaussian Mixture Model (2D)
    • Hierarchical Gating
    • Import Files
    • KMeans
    • Minimum Spanning Tree Gate
    • Multi-channel statistic
    • Principal Component Analysis
    • Polygon Gate
    • Quadrant Gate
    • Range Gate
    • 2D Range Gate
    • Ratio
    • Registration
    • Self-Organizing Map Clustering
    • TASBE Calibrated Flow Cytometry
    • Threshold Gate
    • t-Stochastic Neighbor Embedding
    • Transform statistic
    • Bar Chart
    • Density Plot
    • Export FCS
    • Histogram
    • 2D Histogram
    • 1D Kernel Density Estimate
    • 2D Kernel Density Estimate
    • Long Table
    • Matrix Chart
    • Minimum spanning tree plot
    • Parallel Coordinates Plot
    • Radviz Plot
    • Scatterplot
    • 1D Statistics Plot
    • 2D Statistics Plot
    • Table
    • Violin Plot
  • Screenshots of the Cytoflow GUI
  • Frequently Asked Questions
  • User manual
  • Users’ guides

Users’ guides#

These documents help you understand some of the principles Cytoflow is based on and some subtler points about using it to analyze flow cytometry data. They can help you use Cytoflow more effectively!

  • Guide: Using facets to compare data sets
  • Guide: Using statistics to summarize data
  • Guide: Which measure of center should I use?
  • Guide: How can I understand the experiment structure?
    • Channels
    • Conditions
    • Statistics

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HOWTO: Add error bars to a statistics plot

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Guide: Using facets to compare data sets

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