Cytoflow
1.2
  • User manual
    • Tutorial: Quickstart
    • Tutorial: Dose-Response
    • Tutorial: Machine Learning
    • Tutorial: Yeast Multidimensional Induction Timecourse
    • Tutorial: Synthetic Gene Logic Network
    • HOWTO: Install Cytoflow
    • HOWTO: Import an experiment from a table
    • HOWTO: Export plots
    • HOWTO: Add error bars to a statistics plot
    • HOWTO: Use different gates for different subsets of data
    • HOWTO: Compensate for bleedthrough
    • HOWTO: Use beads to correct for day-to-day variation
    • HOWTO: Use the TASBE workflow for calibrated flow cytometry
    • HOWTO: Export FCS files
    • Guide: Which measure of center should I use?
    • Guide: Using statistics to summarize data
    • Guide: Using facets to compare data sets
    • Guide: How can I understand the experiment structure?
    • Operation and View Gallery
      • Operations
      • Views
        • Operations
        • Views
    • Screenshots of the Cytoflow GUI
    • Frequently Asked Questions
    • Tutorials
    • How-To Guides
    • Users’ guides
    • Operation and View Gallery
      • Operations
      • Views
        • Operations
        • Views
  • Developer Manual
Cytoflow
  • Docs »
  • User manual »
  • Operation and View Gallery
  • Edit on GitHub

Operation and View Gallery¶

Below is a gallery of Cytoflow’s operations and views. Each header will take you to the corresponding manual page.

Operations¶

Autofluorescence correction

operations/autofluorescence-1.png

Bead calibration

operations/bead_calibration-1.png

Binning

operations/binning-1.png

Bleedthrough correction

operations/bleedthrough_linear-1.png

Channel Statistics

Color translation

operations/color_translation-1.png

Density gate

operations/density-1.png

FlowPeaks

operations/flowpeaks-1_01.png

1D Gaussian

operations/gaussian_1d-1.png

2D Gaussian

operations/gaussian_2d-1.png

KMeans Clustering

operations/kmeans-1.png

Principle Component Analysis

Polygon Gate

operations/polygon-1.png

Quad Gate

operations/quad-1.png

Range Gate

operations/range-1.png

Rectangle Gate

operations/range2d-1.png

Ratio

TASBE Calibration

operations/tasbe-4.png

Threshold Gate

operations/threshold-1.png

Transform Statistic

Views¶

Bar Chart

views/bar_chart-1.png

Density Map

views/density-1.png

Export FCS

Histogram

views/histogram-1.png

2D Histogram

views/histogram_2d-1.png

Kernel Density Estimate

views/kde_1d-1.png

2D Kernel Density Estimate

views/kde_2d-1.png

Parallel Coordinates Plot

views/parallel_coords-1.png

RadViz Plot

views/radviz-1.png

Scatterplot

views/scatterplot-1.png

1D Statistics Plot

views/stats_1d-1.png

2D Statistics Plot

views/stats_2d-1.png

Table View

views/table-1.png

Violin Plot

views/violin-1.png

Operations¶

  • Autofluorescence correction
  • Bead Calibration
  • Binning
  • Linear Bleedthrough Compensation
  • Channel statistic
  • Color Translation
  • Density Gate
  • FlowPeaks Clustering
  • Gaussian Mixture Model (1D)
  • Gaussian Mixture Model (2D)
  • Import Files
  • KMeans
  • Principal Component Analysis
  • Polygon Gate
  • Quadrant Gate
  • Range Gate
  • 2D Range Gate
  • Ratio
  • TASBE Calibrated Flow Cytometry
  • Threshold Gate
  • Transform statistic

Views¶

  • Bar Chart
  • Density Plot
  • Export FCS
  • Histogram
  • 2D Histogram
  • 1D Kernel Density Estimate
  • 2D Kernel Density Estimate
  • Parallel Coordinates Plot
  • Radviz Plot
  • Scatterplot
  • 1D Statistics Plot
  • 2D Statistics Plot
  • Table
  • Violin Plot
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© Copyright Massachusetts Institute of Technology 2015-2018, Brian Teague 2018-2022 Revision 70c0df59.

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