cytoflowgui.view_plugins.kde_2d

Plots a 2-d kernel-density estimate. Sort of like a smoothed histogram. The density is visualized with a set of isolines.

X Channel, Y Channel

The channels to plot on the X and Y axes.

X Scale, Y Scale

How to scale the X and Y axes of the plot.

Horizonal Facet

Make multiple plots. Each column has a unique value of this variable.

Vertical Facet

Make multiple plots. Each row has a unique value of this variable.

Color Facet

Plot with multiple colors. Each color has a unique value of this variable.

Color Scale

If Color Facet is a numeric variable, use this scale for the color bar.

Tab Facet

Make multiple plots in differen tabs; each tab’s plot has a unique value of this variable.

Subset

Plot only a subset of the data in the experiment.

../../_images/cytoflowgui-view_plugins-kde_2d-1.png
class cytoflowgui.view_plugins.kde_2d.Kde2DParamsHandler(*args: Any, **kwargs: Any)[source]

Bases: traitsui.api.Controller

class cytoflowgui.view_plugins.kde_2d.Kde2DHandler(*args: Any, **kwargs: Any)[source]

Bases: cytoflowgui.view_plugins.view_plugin_base.ViewHandler

class cytoflowgui.view_plugins.kde_2d.Kde2DPlugin[source]

Bases: envisage.plugin.Plugin, cytoflowgui.view_plugins.view_plugin_base.PluginHelpMixin

view_id = 'edu.mit.synbio.cytoflow.view.kde2d'
short_name = '2D Kernel Density Estimate'
get_view()[source]
get_handler(model, context)[source]
get_icon()[source]