Welcome to Cytoflow’s developer documentation!¶
I want to use Cytoflow’s modules in my own cytometry analysis¶
Great! May I recommend you start with some example Jupyter notebooks. They provide a good introduction to both basic modules and some of Cytoflow’s more advanced features.
- Basic flow cytometry analysis
- An small-molecule induction curve with yeast
- Data-driven gating with gaussian mixture models
- Reproduced some analysis from a published paper
- Calibrated flow cytometry in MEFLs
If you decide you want to have a go, see the installation notes. Quick hint: if you have a working Python v2.7 development environment, say pip install cytoflow to install the latest package from the Python Package Index.
For more details of these modules, you’re likely to want to see the module documents
I want to help develop Cytoflow.¶
Hooray! Have a look at the install documentation for how to get the source code installed. Then, have a look at the design docs and (more or less up-to-date) TODO. Finally, subscribe to the cytoflow-dev mailing list for updates, discussion, etc.