Welcome to Cytoflow’s user and developer documentation!

I want to see the point-and-click program’s documentation

Here’s the manual. At the moment it’s pretty sparse, but there’s a tutorial that should help you get started. Also, check out the online help in the “Help” pane.

I want to use Cytoflow’s modules in my own cytometry analysis

Great! May I recommend you start with some example Jupyter notebooks. They provide a good introduction to both basic modules and some of Cytoflow’s more advanced features.

If you decide you want to have a go, see the installation notes. Quick hint: if you have Anaconda installed, say:

conda config --add channels bpteague
conda create --name cytoflow cytoflow

This creates a new Anaconda environment named cytoflow and installs the latest package from the Anaconda Cloud.

For more details of these modules, you’re likely to want to see the module documents

I want to help develop Cytoflow.

Hooray! Have a look at the install documentation for how to get the source code installed. Then, have a look at the design docs and the new modules documentation. Finally, join us over at the cytoflow GitHub repo to file bugs, submit PRs, etc.