cytoflowgui.workflow.operations.pca

class cytoflowgui.workflow.operations.pca.Channel[source]

Bases: traits.has_traits.HasTraits

class cytoflowgui.workflow.operations.pca.PCAWorkflowOp[source]

Bases: cytoflowgui.workflow.operations.operation_base.WorkflowOperation, cytoflow.operations.pca.PCAOp

estimate(experiment)[source]

Estimate the decomposition

Parameters

  • experiment (Experiment) – The Experiment to use to estimate the k-means clusters

  • subset (str (default = None)) – A Python expression that specifies a subset of the data in experiment to use to parameterize the operation.

apply(experiment)[source]

Apply the PCA decomposition to the data.

Returns

a new Experiment with additional Experiment.channels named name_1 ... name_n

Return type

Experiment

clear_estimate()[source]
get_notebook_code(idx)[source]