Cytoflow
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Developer Manual
Cytoflow
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I
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Z
A
A (cytoflow.utility.logicle_scale.LogicleScale attribute)
activate() (cytoflowgui.export_task.ExportTaskPane method)
activate_cytoflow_task() (cytoflowgui.export_task.ExportTask method)
activate_view() (cytoflowgui.workflow_controller.WorkflowController method)
activated() (cytoflowgui.export_task.ExportTask method)
add_channel (cytoflowgui.op_plugins.bead_calibration.BeadCalibrationHandler attribute)
(cytoflowgui.op_plugins.pca.PCAHandler attribute)
(cytoflowgui.view_plugins.parallel_coords.ParallelCoordinatesHandler attribute)
(cytoflowgui.view_plugins.radviz.RadvizHandler attribute)
add_channel() (cytoflow.experiment.Experiment method)
add_condition() (cytoflow.experiment.Experiment method)
add_control (cytoflowgui.op_plugins.bleedthrough_linear.BleedthroughLinearHandler attribute)
(cytoflowgui.op_plugins.color_translation.ColorTranslationHandler attribute)
add_events() (cytoflow.experiment.Experiment method)
ADD_ITEMS (cytoflowgui.workflow.workflow.Msg attribute)
add_operation() (cytoflowgui.workflow_controller.WorkflowController method)
add_tubes (cytoflowgui.import_dialog.ExperimentDialogHandler attribute)
add_variable (cytoflowgui.import_dialog.ExperimentDialogHandler attribute)
all_conditions_set (cytoflowgui.import_dialog.Tube attribute)
AlphaColormap (class in cytoflow.views.histogram_2d)
always_use_default_layout (cytoflowgui.cytoflow_application.CytoflowApplication attribute)
(cytoflowgui.preferences.CytoflowPreferences attribute)
AnnotatingView (class in cytoflow.operations.base_op_views)
application_error (cytoflowgui.cytoflow_application.CytoflowApplication attribute)
application_log (cytoflowgui.cytoflow_application.CytoflowApplication attribute)
APPLY (cytoflowgui.workflow.Changed attribute)
apply() (cytoflow.operations.autofluorescence.AutofluorescenceOp method)
(cytoflow.operations.bead_calibration.BeadCalibrationOp method)
(cytoflow.operations.binning.BinningOp method)
(cytoflow.operations.bleedthrough_linear.BleedthroughLinearOp method)
(cytoflow.operations.channel_stat.ChannelStatisticOp method)
(cytoflow.operations.color_translation.ColorTranslationOp method)
(cytoflow.operations.density.DensityGateOp method)
(cytoflow.operations.flowpeaks.FlowPeaksOp method)
(cytoflow.operations.frame_stat.FrameStatisticOp method)
(cytoflow.operations.gaussian.GaussianMixtureOp method)
(cytoflow.operations.i_operation.IOperation method)
(cytoflow.operations.import_op.ImportOp method)
(cytoflow.operations.kmeans.KMeansOp method)
(cytoflow.operations.pca.PCAOp method)
(cytoflow.operations.polygon.PolygonOp method)
(cytoflow.operations.quad.QuadOp method)
(cytoflow.operations.range.RangeOp method)
(cytoflow.operations.range2d.Range2DOp method)
(cytoflow.operations.ratio.RatioOp method)
(cytoflow.operations.threshold.ThresholdOp method)
(cytoflow.operations.xform_stat.TransformStatisticOp method)
(cytoflowgui.workflow.operations.autofluorescence.AutofluorescenceWorkflowOp method)
(cytoflowgui.workflow.operations.bead_calibration.BeadCalibrationWorkflowOp method)
(cytoflowgui.workflow.operations.bleedthrough_linear.BleedthroughLinearWorkflowOp method)
(cytoflowgui.workflow.operations.channel_stat.ChannelStatisticWorkflowOp method)
(cytoflowgui.workflow.operations.color_translation.ColorTranslationWorkflowOp method)
(cytoflowgui.workflow.operations.density.DensityGateWorkflowOp method)
(cytoflowgui.workflow.operations.flowpeaks.FlowPeaksWorkflowOp method)
(cytoflowgui.workflow.operations.gaussian_1d.GaussianMixture1DWorkflowOp method)
(cytoflowgui.workflow.operations.gaussian_2d.GaussianMixture2DWorkflowOp method)
(cytoflowgui.workflow.operations.import_op.ImportWorkflowOp method)
(cytoflowgui.workflow.operations.kmeans.KMeansWorkflowOp method)
(cytoflowgui.workflow.operations.pca.PCAWorkflowOp method)
(cytoflowgui.workflow.operations.tasbe.TasbeWorkflowOp method)
(cytoflowgui.workflow.operations.xform_stat.TransformStatisticWorkflowOp method)
(cytoflowgui.workflow.workflow_item.WorkflowItem method)
APPLY_CALLED (cytoflowgui.workflow.workflow.Msg attribute)
autodetect_name_metadata() (in module cytoflow.operations.import_op)
AUTOFLUORESCENCE (cytoflowgui.workflow.operations.tasbe.Progress attribute)
AutofluorescenceDiagnosticView (class in cytoflow.operations.autofluorescence)
AutofluorescenceHandler (class in cytoflowgui.op_plugins.autofluorescence)
AutofluorescenceOp (class in cytoflow.operations.autofluorescence)
AutofluorescencePlugin (class in cytoflowgui.op_plugins.autofluorescence)
AutofluorescenceViewHandler (class in cytoflowgui.op_plugins.autofluorescence)
AutofluorescenceWorkflowOp (class in cytoflowgui.workflow.operations.autofluorescence)
AutofluorescenceWorkflowView (class in cytoflowgui.workflow.operations.autofluorescence)
B
b (cytoflow.utility.hlog_scale.HlogScale attribute)
background_color (cytoflowgui.editors.color_text_editor.ColorTextEditor attribute)
BarChartHandler (class in cytoflowgui.view_plugins.bar_chart)
BarChartParamsHandler (class in cytoflowgui.view_plugins.bar_chart)
BarChartPlotParams (class in cytoflowgui.workflow.views.bar_chart)
BarChartPlugin (class in cytoflowgui.view_plugins.bar_chart)
BarChartView (class in cytoflow.views.bar_chart)
BarChartWorkflowView (class in cytoflowgui.workflow.views.bar_chart)
base (cytoflow.views.export_fcs.ExportFCS attribute)
Base1DStatisticsView (class in cytoflow.views.base_views)
Base1DView (class in cytoflow.views.base_views)
Base2DStatisticsView (class in cytoflow.views.base_views)
Base2DView (class in cytoflow.views.base_views)
BaseDataView (class in cytoflow.views.base_views)
BaseNDView (class in cytoflow.views.base_views)
BasePlotParams (class in cytoflowgui.workflow.views.view_base)
BaseStatisticsView (class in cytoflow.views.base_views)
BaseView (class in cytoflow.views.base_views)
bead_brightness_cutoff (cytoflow.operations.bead_calibration.BeadCalibrationOp attribute)
bead_brightness_threshold (cytoflow.operations.bead_calibration.BeadCalibrationOp attribute)
BEAD_CALIBRATION (cytoflowgui.workflow.operations.tasbe.Progress attribute)
bead_histogram_bins (cytoflow.operations.bead_calibration.BeadCalibrationOp attribute)
bead_peak_quantile (cytoflow.operations.bead_calibration.BeadCalibrationOp attribute)
BeadCalibrationDiagnostic (class in cytoflow.operations.bead_calibration)
BeadCalibrationHandler (class in cytoflowgui.op_plugins.bead_calibration)
BeadCalibrationOp (class in cytoflow.operations.bead_calibration)
BeadCalibrationPlugin (class in cytoflowgui.op_plugins.bead_calibration)
BeadCalibrationViewHandler (class in cytoflowgui.op_plugins.bead_calibration)
BeadCalibrationWorkflowOp (class in cytoflowgui.workflow.operations.bead_calibration)
BeadCalibrationWorkflowView (class in cytoflowgui.workflow.operations.bead_calibration)
BEADS (cytoflow.operations.bead_calibration.BeadCalibrationOp attribute)
beads (cytoflow.operations.bead_calibration.BeadCalibrationOp attribute)
beads_file (cytoflow.operations.bead_calibration.BeadCalibrationOp attribute)
beads_name_choices (cytoflowgui.op_plugins.bead_calibration.BeadCalibrationHandler attribute)
(cytoflowgui.op_plugins.tasbe.TasbeHandler attribute)
beads_units (cytoflowgui.op_plugins.bead_calibration.BeadCalibrationHandler attribute)
(cytoflowgui.op_plugins.tasbe.TasbeHandler attribute)
BeadUnit (class in cytoflowgui.workflow.operations.tasbe)
bin_width (cytoflow.operations.binning.BinningOp attribute)
BinningHandler (class in cytoflowgui.op_plugins.binning)
BinningOp (class in cytoflow.operations.binning)
BinningPlugin (class in cytoflowgui.op_plugins.binning)
BinningView (class in cytoflow.operations.binning)
BinningViewHandler (class in cytoflowgui.op_plugins.binning)
BinningWorkflowOp (class in cytoflowgui.workflow.operations.binning)
BinningWorkflowView (class in cytoflowgui.workflow.operations.binning)
bins (cytoflow.operations.density.DensityGateOp attribute)
blank_file (cytoflow.operations.autofluorescence.AutofluorescenceOp attribute)
blank_file_conditions (cytoflow.operations.autofluorescence.AutofluorescenceOp attribute)
BLEEDTHROUGH (cytoflowgui.workflow.operations.tasbe.Progress attribute)
BleedthroughControl (class in cytoflowgui.workflow.operations.tasbe)
BleedthroughControlHandler (class in cytoflowgui.op_plugins.tasbe)
BleedthroughLinearDiagnostic (class in cytoflow.operations.bleedthrough_linear)
BleedthroughLinearHandler (class in cytoflowgui.op_plugins.bleedthrough_linear)
BleedthroughLinearOp (class in cytoflow.operations.bleedthrough_linear)
BleedthroughLinearPlugin (class in cytoflowgui.op_plugins.bleedthrough_linear)
BleedthroughLinearViewHandler (class in cytoflowgui.op_plugins.bleedthrough_linear)
BleedthroughLinearWorkflowOp (class in cytoflowgui.workflow.operations.bleedthrough_linear)
BleedthroughLinearWorkflowView (class in cytoflowgui.workflow.operations.bleedthrough_linear)
BLIT (cytoflowgui.matplotlib_backend_local.Msg attribute)
(cytoflowgui.matplotlib_backend_remote.Msg attribute)
blit() (cytoflowgui.matplotlib_backend_remote.FigureCanvasAggRemote method)
BoolSubset (class in cytoflowgui.workflow.subset)
BoolSubsetHandler (class in cytoflowgui.subset_controllers)
bootstrap() (in module cytoflow.utility.algorithms)
by (cytoflow.operations.base_op_views.ByView attribute)
(cytoflow.operations.channel_stat.ChannelStatisticOp attribute)
(cytoflow.operations.density.DensityGateOp attribute)
(cytoflow.operations.density.DensityGateView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks1DView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks2DDensityView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks2DView attribute)
(cytoflow.operations.flowpeaks.FlowPeaksOp attribute)
(cytoflow.operations.frame_stat.FrameStatisticOp attribute)
(cytoflow.operations.gaussian.GaussianMixture1DView attribute)
(cytoflow.operations.gaussian.GaussianMixture2DView attribute)
(cytoflow.operations.gaussian.GaussianMixtureOp attribute)
(cytoflow.operations.kmeans.KMeans1DView attribute)
(cytoflow.operations.kmeans.KMeans2DView attribute)
(cytoflow.operations.kmeans.KMeansOp attribute)
(cytoflow.operations.pca.PCAOp attribute)
(cytoflow.operations.xform_stat.TransformStatisticOp attribute)
(cytoflow.views.export_fcs.ExportFCS attribute)
By1DView (class in cytoflow.operations.base_op_views)
By2DView (class in cytoflow.operations.base_op_views)
ByView (class in cytoflow.operations.base_op_views)
C
CallbackHandler (class in cytoflowgui.utility.logging)
CallingMessageRecord (class in cytoflowgui.utility.event_tracer)
canvas (cytoflowgui.cytoflow_application.CytoflowApplication attribute)
(cytoflowgui.export_task.ExportTaskPane attribute)
cartesian() (in module cytoflow.utility.util_functions)
CategorySubset (class in cytoflowgui.workflow.subset)
CategorySubsetHandler (class in cytoflowgui.subset_controllers)
CFloatOrNone (class in cytoflow.utility.custom_traits)
CHANGE_CURRENT_PLOT (cytoflowgui.workflow.workflow.Msg attribute)
CHANGE_CURRENT_VIEW (cytoflowgui.workflow.workflow.Msg attribute)
Changed (class in cytoflowgui.workflow)
changed (cytoflowgui.workflow.operations.operation_base.IWorkflowOperation attribute)
(cytoflowgui.workflow.views.view_base.IWorkflowView attribute)
ChangeEventRecorder (class in cytoflowgui.utility.event_tracer)
ChangeMessageRecord (class in cytoflowgui.utility.event_tracer)
Channel (class in cytoflowgui.workflow.operations.import_op)
(class in cytoflowgui.workflow.operations.pca)
(class in cytoflowgui.workflow.views.radviz)
(class in cytoflowgui.workflow.views.view_base)
channel (cytoflow.operations.base_op_views.Op1DView attribute)
(cytoflow.operations.binning.BinningOp attribute)
(cytoflow.operations.binning.BinningView attribute)
(cytoflow.operations.channel_stat.ChannelStatisticOp attribute)
(cytoflow.operations.flowpeaks.FlowPeaks1DView attribute)
(cytoflow.operations.gaussian.GaussianMixture1DView attribute)
(cytoflow.operations.kmeans.KMeans1DView attribute)
(cytoflow.operations.range.RangeOp attribute)
(cytoflow.operations.range.RangeSelection attribute)
(cytoflow.operations.threshold.ThresholdOp attribute)
(cytoflow.operations.threshold.ThresholdSelection attribute)
(cytoflow.utility.logicle_scale.LogicleScale attribute)
(cytoflow.utility.scale.IScale attribute)
(cytoflow.views.base_views.Base1DView attribute)
(cytoflow.views.histogram.HistogramView attribute)
(cytoflow.views.kde_1d.Kde1DView attribute)
(cytoflow.views.violin.ViolinPlotView attribute)
(cytoflowgui.experiment_pane_model.ChannelNode attribute)
ChannelHandler (class in cytoflowgui.op_plugins.import_op)
(class in cytoflowgui.op_plugins.pca)
(class in cytoflowgui.view_plugins.parallel_coords)
(class in cytoflowgui.view_plugins.radviz)
ChannelNode (class in cytoflowgui.experiment_pane_model)
channels (cytoflow.experiment.Experiment attribute)
(cytoflow.operations.autofluorescence.AutofluorescenceOp attribute)
(cytoflow.operations.flowpeaks.FlowPeaksOp attribute)
(cytoflow.operations.gaussian.GaussianMixtureOp attribute)
(cytoflow.operations.import_op.ImportOp attribute)
(cytoflow.operations.kmeans.KMeansOp attribute)
(cytoflow.operations.pca.PCAOp attribute)
(cytoflow.views.base_views.BaseNDView attribute)
(cytoflow.views.parallel_coords.ParallelCoordinatesView attribute)
(cytoflow.views.radviz.RadvizView attribute)
(cytoflowgui.op_plugins.bead_calibration.BeadCalibrationHandler attribute)
(cytoflowgui.op_plugins.bleedthrough_linear.BleedthroughLinearHandler attribute)
(cytoflowgui.op_plugins.color_translation.ColorTranslationHandler attribute)
(cytoflowgui.op_plugins.pca.PCAHandler attribute)
(cytoflowgui.view_plugins.parallel_coords.ParallelCoordinatesHandler attribute)
(cytoflowgui.view_plugins.radviz.RadvizHandler attribute)
(cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
(cytoflowgui.workflow_controller.WorkflowItemHandler attribute)
ChannelsNode (class in cytoflowgui.experiment_pane_model)
ChannelStatisticHandler (class in cytoflowgui.op_plugins.channel_stat)
ChannelStatisticOp (class in cytoflow.operations.channel_stat)
ChannelStatisticPlugin (class in cytoflowgui.op_plugins.channel_stat)
ChannelStatisticWorkflowOp (class in cytoflowgui.workflow.operations.channel_stat)
check_tube() (in module cytoflow.operations.import_op)
ci() (in module cytoflow.utility.algorithms)
CIntOrNone (class in cytoflow.utility.custom_traits)
class_name (cytoflowgui.utility.event_tracer.ChangeMessageRecord attribute)
clear_estimate() (cytoflowgui.workflow.operations.autofluorescence.AutofluorescenceWorkflowOp method)
(cytoflowgui.workflow.operations.bead_calibration.BeadCalibrationWorkflowOp method)
(cytoflowgui.workflow.operations.binning.BinningWorkflowOp method)
(cytoflowgui.workflow.operations.bleedthrough_linear.BleedthroughLinearWorkflowOp method)
(cytoflowgui.workflow.operations.channel_stat.ChannelStatisticWorkflowOp method)
(cytoflowgui.workflow.operations.color_translation.ColorTranslationWorkflowOp method)
(cytoflowgui.workflow.operations.density.DensityGateWorkflowOp method)
(cytoflowgui.workflow.operations.flowpeaks.FlowPeaksWorkflowOp method)
(cytoflowgui.workflow.operations.gaussian_1d.GaussianMixture1DWorkflowOp method)
(cytoflowgui.workflow.operations.gaussian_2d.GaussianMixture2DWorkflowOp method)
(cytoflowgui.workflow.operations.import_op.ImportWorkflowOp method)
(cytoflowgui.workflow.operations.kmeans.KMeansWorkflowOp method)
(cytoflowgui.workflow.operations.operation_base.IWorkflowOperation method)
(cytoflowgui.workflow.operations.operation_base.WorkflowOperation method)
(cytoflowgui.workflow.operations.pca.PCAWorkflowOp method)
(cytoflowgui.workflow.operations.polygon.PolygonSelectionView method)
(cytoflowgui.workflow.operations.quad.QuadSelectionView method)
(cytoflowgui.workflow.operations.quad.QuadWorkflowOp method)
(cytoflowgui.workflow.operations.range.RangeSelectionView method)
(cytoflowgui.workflow.operations.range2d.Range2DSelectionView method)
(cytoflowgui.workflow.operations.ratio.RatioWorkflowOp method)
(cytoflowgui.workflow.operations.tasbe.TasbeWorkflowOp method)
(cytoflowgui.workflow.operations.threshold.ThresholdWorkflowOp method)
(cytoflowgui.workflow.operations.xform_stat.TransformStatisticWorkflowOp method)
clip() (cytoflow.utility.hlog_scale.HlogScale method)
(cytoflow.utility.linear_scale.LinearScale method)
(cytoflow.utility.log_scale.LogScale method)
(cytoflow.utility.logicle_scale.LogicleScale method)
(cytoflow.utility.scale.IScale method)
clone() (cytoflow.experiment.Experiment method)
closable (cytoflowgui.experiment_pane.ExperimentBrowserDockPane attribute)
(cytoflowgui.export_task.ExportPane attribute)
(cytoflowgui.view_pane.PlotParamsPane attribute)
close() (cytoflowgui.editors.vertical_notebook.VerticalNotebook method)
(cytoflowgui.import_dialog.ExperimentDialogHandler method)
(cytoflowgui.utility.event_tracer.MultiThreadChangeEventRecorder method)
closed() (cytoflowgui.import_dialog.ExperimentDialogHandler method)
COLOR_TRANSLATION (cytoflowgui.workflow.operations.tasbe.Progress attribute)
ColorTextEditor (class in cytoflowgui.editors.color_text_editor)
ColorTranslationDiagnostic (class in cytoflow.operations.color_translation)
ColorTranslationHandler (class in cytoflowgui.op_plugins.color_translation)
ColorTranslationOp (class in cytoflow.operations.color_translation)
ColorTranslationPlugin (class in cytoflowgui.op_plugins.color_translation)
ColorTranslationViewHandler (class in cytoflowgui.op_plugins.color_translation)
ColorTranslationWorkflowOp (class in cytoflowgui.workflow.operations.color_translation)
ColorTranslationWorkflowView (class in cytoflowgui.workflow.operations.color_translation)
column_facet (cytoflow.views.table.TableView attribute)
condition (cytoflow.utility.logicle_scale.LogicleScale attribute)
(cytoflow.utility.scale.IScale attribute)
(cytoflowgui.experiment_pane_model.ConditionNode attribute)
ConditionNode (class in cytoflowgui.experiment_pane_model)
conditions (cytoflow.experiment.Experiment attribute)
(cytoflow.operations.import_op.ImportOp attribute)
(cytoflow.operations.import_op.Tube attribute)
(cytoflowgui.editors.subset_list_editor.SubsetListEditor attribute)
(cytoflowgui.import_dialog.Tube attribute)
(cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
(cytoflowgui.workflow_controller.WorkflowItemHandler attribute)
conditions_equal() (cytoflow.operations.import_op.Tube method)
conditions_hash() (cytoflowgui.import_dialog.Tube method)
conditions_names (cytoflowgui.workflow_controller.WorkflowItemHandler attribute)
ConditionsNode (class in cytoflowgui.experiment_pane_model)
context (cytoflowgui.op_plugins.op_plugin_base.OpHandler attribute)
(cytoflowgui.view_plugins.view_plugin_base.ViewHandler attribute)
Control (class in cytoflowgui.workflow.operations.bleedthrough_linear)
(class in cytoflowgui.workflow.operations.color_translation)
control_conditions (cytoflow.operations.bleedthrough_linear.BleedthroughLinearOp attribute)
(cytoflow.operations.color_translation.ColorTranslationOp attribute)
ControlHandler (class in cytoflowgui.op_plugins.bleedthrough_linear)
(class in cytoflowgui.op_plugins.color_translation)
controller (cytoflowgui.cytoflow_application.CytoflowApplication attribute)
controls (cytoflow.operations.bleedthrough_linear.BleedthroughLinearOp attribute)
(cytoflow.operations.color_translation.ColorTranslationOp attribute)
ConvertingBool (class in cytoflowgui.import_dialog)
counter (cytoflowgui.import_dialog.ExperimentDialogModel attribute)
cov2corr() (in module cytoflow.utility.util_functions)
create() (cytoflowgui.export_task.ExportTaskPane method)
create_central_pane() (cytoflowgui.export_task.ExportTask method)
create_contents() (cytoflowgui.experiment_pane.ExperimentBrowserDockPane method)
(cytoflowgui.export_task.ExportPane method)
(cytoflowgui.view_pane.PlotParamsPane method)
(cytoflowgui.view_pane.ViewDockPane method)
(cytoflowgui.workflow_pane.WorkflowDockPane method)
create_control() (cytoflowgui.editors.vertical_notebook.VerticalNotebook method)
create_dock_panes() (cytoflowgui.export_task.ExportTask method)
create_page() (cytoflowgui.editors.vertical_notebook.VerticalNotebook method)
current_plot (cytoflowgui.workflow.views.view_base.WorkflowView attribute)
current_view (cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
custom_editor() (cytoflowgui.editors.instance_handler_editor.InstanceHandlerEditor method)
custom_editor_class (cytoflowgui.editors.instance_handler_editor.InstanceHandlerEditor attribute)
cytoflow
module
cytoflow.experiment
module
cytoflow.operations
module
cytoflow.operations.autofluorescence
module
cytoflow.operations.base_op_views
module
cytoflow.operations.bead_calibration
module
cytoflow.operations.binning
module
cytoflow.operations.bleedthrough_linear
module
cytoflow.operations.channel_stat
module
cytoflow.operations.color_translation
module
cytoflow.operations.density
module
cytoflow.operations.flowpeaks
module
cytoflow.operations.frame_stat
module
cytoflow.operations.gaussian
module
cytoflow.operations.i_operation
module
cytoflow.operations.import_op
module
cytoflow.operations.kmeans
module
cytoflow.operations.pca
module
cytoflow.operations.polygon
module
cytoflow.operations.quad
module
cytoflow.operations.range
module
cytoflow.operations.range2d
module
cytoflow.operations.ratio
module
cytoflow.operations.threshold
module
cytoflow.operations.xform_stat
module
cytoflow.scripts
module
cytoflow.scripts.channel_voltages
module
cytoflow.scripts.fcs_metadata
module
cytoflow.scripts.parse_beads
module
cytoflow.scripts.split_fcs
module
cytoflow.utility
module
cytoflow.utility.algorithms
module
cytoflow.utility.custom_traits
module
cytoflow.utility.cytoflow_errors
module
cytoflow.utility.docstring
module
cytoflow.utility.fcswrite
module
cytoflow.utility.hlog_scale
module
cytoflow.utility.linear_scale
module
cytoflow.utility.log_scale
module
cytoflow.utility.logging
module
cytoflow.utility.logicle_scale
module
cytoflow.utility.scale
module
cytoflow.utility.util_functions
module
cytoflow.views
module
cytoflow.views.bar_chart
module
cytoflow.views.base_views
module
cytoflow.views.densityplot
module
cytoflow.views.export_fcs
module
cytoflow.views.histogram
module
cytoflow.views.histogram_2d
module
cytoflow.views.i_selectionview
module
cytoflow.views.i_view
module
cytoflow.views.kde_1d
module
cytoflow.views.kde_2d
module
cytoflow.views.parallel_coords
module
cytoflow.views.radviz
module
cytoflow.views.scatterplot
module
cytoflow.views.stats_1d
module
cytoflow.views.stats_2d
module
cytoflow.views.table
module
cytoflow.views.violin
module
CytoflowApplication (class in cytoflowgui.cytoflow_application)
CytoflowError
cytoflowgui
module
cytoflowgui.cytoflow_application
module
cytoflowgui.editors
module
cytoflowgui.editors.color_text_editor
module
cytoflowgui.editors.ext_enum_editor
module
cytoflowgui.editors.instance_handler_editor
module
cytoflowgui.editors.range_slider
module
cytoflowgui.editors.subset_list_editor
module
cytoflowgui.editors.tab_list_editor
module
cytoflowgui.editors.toggle_button
module
cytoflowgui.editors.value_bounds_editor
module
cytoflowgui.editors.vertical_list_editor
module
cytoflowgui.editors.vertical_notebook
module
cytoflowgui.editors.vertical_notebook_editor
module
cytoflowgui.editors.zoomable_html_editor
module
cytoflowgui.experiment_pane
module
cytoflowgui.experiment_pane_model
module
cytoflowgui.export_task
module
cytoflowgui.import_dialog
module
cytoflowgui.matplotlib_backend_local
module
cytoflowgui.matplotlib_backend_remote
module
cytoflowgui.op_plugins
module
cytoflowgui.op_plugins.autofluorescence
module
cytoflowgui.op_plugins.bead_calibration
module
cytoflowgui.op_plugins.binning
module
cytoflowgui.op_plugins.bleedthrough_linear
module
cytoflowgui.op_plugins.channel_stat
module
cytoflowgui.op_plugins.color_translation
module
cytoflowgui.op_plugins.density
module
cytoflowgui.op_plugins.flowpeaks
module
cytoflowgui.op_plugins.gaussian_1d
module
cytoflowgui.op_plugins.gaussian_2d
module
cytoflowgui.op_plugins.i_op_plugin
module
cytoflowgui.op_plugins.import_op
module
cytoflowgui.op_plugins.kmeans
module
cytoflowgui.op_plugins.op_plugin_base
module
cytoflowgui.op_plugins.pca
module
cytoflowgui.op_plugins.polygon
module
cytoflowgui.op_plugins.quad
module
cytoflowgui.op_plugins.range
module
cytoflowgui.op_plugins.range2d
module
cytoflowgui.op_plugins.ratio
module
cytoflowgui.op_plugins.tasbe
module
cytoflowgui.op_plugins.threshold
module
cytoflowgui.op_plugins.xform_stat
module
cytoflowgui.preferences
module
cytoflowgui.run
module
cytoflowgui.subset_controllers
module
cytoflowgui.util
module
cytoflowgui.utility
module
cytoflowgui.utility.event_tracer
module
cytoflowgui.utility.logging
module
cytoflowgui.view_pane
module
cytoflowgui.view_plugins
module
cytoflowgui.view_plugins.bar_chart
module
cytoflowgui.view_plugins.density
module
cytoflowgui.view_plugins.export_fcs
module
cytoflowgui.view_plugins.histogram
module
cytoflowgui.view_plugins.histogram_2d
module
cytoflowgui.view_plugins.i_view_plugin
module
cytoflowgui.view_plugins.kde_1d
module
cytoflowgui.view_plugins.kde_2d
module
cytoflowgui.view_plugins.parallel_coords
module
cytoflowgui.view_plugins.radviz
module
cytoflowgui.view_plugins.scatterplot
module
cytoflowgui.view_plugins.stats_1d
module
cytoflowgui.view_plugins.stats_2d
module
cytoflowgui.view_plugins.table
module
cytoflowgui.view_plugins.view_plugin_base
module
cytoflowgui.view_plugins.violin
module
cytoflowgui.workflow
module
cytoflowgui.workflow.operations
module
cytoflowgui.workflow.operations.autofluorescence
module
cytoflowgui.workflow.operations.bead_calibration
module
cytoflowgui.workflow.operations.binning
module
cytoflowgui.workflow.operations.bleedthrough_linear
module
cytoflowgui.workflow.operations.channel_stat
module
cytoflowgui.workflow.operations.color_translation
module
cytoflowgui.workflow.operations.density
module
cytoflowgui.workflow.operations.flowpeaks
module
cytoflowgui.workflow.operations.gaussian_1d
module
cytoflowgui.workflow.operations.gaussian_2d
module
cytoflowgui.workflow.operations.import_op
module
cytoflowgui.workflow.operations.kmeans
module
cytoflowgui.workflow.operations.operation_base
module
cytoflowgui.workflow.operations.pca
module
cytoflowgui.workflow.operations.polygon
module
cytoflowgui.workflow.operations.quad
module
cytoflowgui.workflow.operations.range
module
cytoflowgui.workflow.operations.range2d
module
cytoflowgui.workflow.operations.ratio
module
cytoflowgui.workflow.operations.tasbe
module
cytoflowgui.workflow.operations.threshold
module
cytoflowgui.workflow.operations.xform_stat
module
cytoflowgui.workflow.serialization
module
cytoflowgui.workflow.subset
module
cytoflowgui.workflow.views
module
cytoflowgui.workflow.views.bar_chart
module
cytoflowgui.workflow.views.density
module
cytoflowgui.workflow.views.export_fcs
module
cytoflowgui.workflow.views.histogram
module
cytoflowgui.workflow.views.histogram_2d
module
cytoflowgui.workflow.views.kde_1d
module
cytoflowgui.workflow.views.kde_2d
module
cytoflowgui.workflow.views.parallel_coords
module
cytoflowgui.workflow.views.radviz
module
cytoflowgui.workflow.views.scatterplot
module
cytoflowgui.workflow.views.stats_1d
module
cytoflowgui.workflow.views.stats_2d
module
cytoflowgui.workflow.views.table
module
cytoflowgui.workflow.views.view_base
module
cytoflowgui.workflow.views.violin
module
cytoflowgui.workflow.workflow
module
cytoflowgui.workflow.workflow_item
module
cytoflowgui.workflow_controller
module
cytoflowgui.workflow_pane
module
CytoflowOpError
CytoflowOpWarning
CytoflowPreferences (class in cytoflowgui.preferences)
CytoflowPreferencesPane (class in cytoflowgui.preferences)
CytoflowViewError
CytoflowViewWarning
CytoflowWarning
D
data (cytoflow.experiment.Experiment attribute)
(cytoflow.utility.scale.IScale attribute)
(cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute)
Data1DPlotParams (class in cytoflowgui.workflow.views.view_base)
Data2DPlotParams (class in cytoflowgui.workflow.views.view_base)
data_set (cytoflow.operations.import_op.ImportOp attribute)
DataPlotParams (class in cytoflowgui.workflow.views.view_base)
debug (cytoflowgui.cytoflow_application.CytoflowApplication attribute)
default_layout (cytoflowgui.cytoflow_application.CytoflowApplication attribute)
default_suffix (cytoflowgui.util.DefaultFileDialog attribute)
default_traits_view() (cytoflowgui.export_task.ExportPane method)
default_view (cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
default_view() (cytoflow.operations.autofluorescence.AutofluorescenceOp method)
(cytoflow.operations.bead_calibration.BeadCalibrationOp method)
(cytoflow.operations.binning.BinningOp method)
(cytoflow.operations.bleedthrough_linear.BleedthroughLinearOp method)
(cytoflow.operations.color_translation.ColorTranslationOp method)
(cytoflow.operations.density.DensityGateOp method)
(cytoflow.operations.flowpeaks.FlowPeaksOp method)
(cytoflow.operations.gaussian.GaussianMixtureOp method)
(cytoflow.operations.i_operation.IOperation method)
(cytoflow.operations.kmeans.KMeansOp method)
(cytoflow.operations.polygon.PolygonOp method)
(cytoflow.operations.quad.QuadOp method)
(cytoflow.operations.range.RangeOp method)
(cytoflow.operations.range2d.Range2DOp method)
(cytoflow.operations.threshold.ThresholdOp method)
(cytoflowgui.workflow.operations.autofluorescence.AutofluorescenceWorkflowOp method)
(cytoflowgui.workflow.operations.bead_calibration.BeadCalibrationWorkflowOp method)
(cytoflowgui.workflow.operations.binning.BinningWorkflowOp method)
(cytoflowgui.workflow.operations.bleedthrough_linear.BleedthroughLinearWorkflowOp method)
(cytoflowgui.workflow.operations.color_translation.ColorTranslationWorkflowOp method)
(cytoflowgui.workflow.operations.density.DensityGateWorkflowOp method)
(cytoflowgui.workflow.operations.flowpeaks.FlowPeaksWorkflowOp method)
(cytoflowgui.workflow.operations.gaussian_1d.GaussianMixture1DWorkflowOp method)
(cytoflowgui.workflow.operations.gaussian_2d.GaussianMixture2DWorkflowOp method)
(cytoflowgui.workflow.operations.kmeans.KMeansWorkflowOp method)
(cytoflowgui.workflow.operations.polygon.PolygonWorkflowOp method)
(cytoflowgui.workflow.operations.quad.QuadWorkflowOp method)
(cytoflowgui.workflow.operations.range.RangeWorkflowOp method)
(cytoflowgui.workflow.operations.range2d.Range2DWorkflowOp method)
(cytoflowgui.workflow.operations.tasbe.TasbeWorkflowOp method)
(cytoflowgui.workflow.operations.threshold.ThresholdWorkflowOp method)
DefaultFileDialog (class in cytoflowgui.util)
deletable (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute)
(cytoflowgui.workflow_controller.WorkflowItemHandler attribute)
deletable_object (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute)
deletable_object_trait (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute)
delete (cytoflowgui.editors.vertical_notebook.VerticalNotebook attribute)
(cytoflowgui.editors.vertical_notebook_editor.VerticalNotebookEditor attribute)
denominator (cytoflow.operations.ratio.RatioOp attribute)
DensityGateHandler (class in cytoflowgui.op_plugins.density)
DensityGateOp (class in cytoflow.operations.density)
DensityGatePlugin (class in cytoflowgui.op_plugins.density)
DensityGateView (class in cytoflow.operations.density)
DensityGateViewHandler (class in cytoflowgui.op_plugins.density)
DensityGateWorkflowOp (class in cytoflowgui.workflow.operations.density)
DensityGateWorkflowView (class in cytoflowgui.workflow.operations.density)
DensityHandler (class in cytoflowgui.view_plugins.density)
DensityParamsHandler (class in cytoflowgui.view_plugins.density)
DensityPlotParams (class in cytoflowgui.workflow.views.density)
DensityPlugin (class in cytoflowgui.view_plugins.density)
DensityPolygonSelectionView (class in cytoflow.operations.polygon)
DensityQuadSelectionView (class in cytoflow.operations.quad)
DensityRangeSelection2DView (class in cytoflow.operations.range2d)
DensityView (class in cytoflow.views.densityplot)
DensityWorkflowView (class in cytoflowgui.workflow.views.density)
Deprecated (class in cytoflow.utility.custom_traits)
description (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute)
description_object (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute)
description_object_trait (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute)
dialog_model (cytoflowgui.op_plugins.import_op.ImportHandler attribute)
dispose() (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage method)
do_estimate (cytoflowgui.workflow.operations.operation_base.IWorkflowOperation attribute)
dock_area (cytoflowgui.experiment_pane.ExperimentBrowserDockPane attribute)
(cytoflowgui.export_task.ExportPane attribute)
(cytoflowgui.view_pane.PlotParamsPane attribute)
dpi (cytoflowgui.cytoflow_application.CytoflowApplication attribute)
(cytoflowgui.export_task.ExportTask attribute)
DPI (cytoflowgui.matplotlib_backend_local.Msg attribute)
(cytoflowgui.matplotlib_backend_remote.Msg attribute)
DRAW (cytoflowgui.matplotlib_backend_local.Msg attribute)
(cytoflowgui.matplotlib_backend_remote.Msg attribute)
draw() (cytoflowgui.matplotlib_backend_remote.FigureCanvasAggRemote method)
draw_if_interactive() (in module cytoflowgui.matplotlib_backend_remote)
dummy_experiment (cytoflowgui.import_dialog.ExperimentDialogModel attribute)
E
edit_traits() (cytoflowgui.workflow.workflow_item.WorkflowItem method)
editor (cytoflowgui.editors.vertical_notebook.VerticalNotebook attribute)
emit() (cytoflowgui.utility.logging.CallbackHandler method)
enum_conditions_and_files() (cytoflowgui.workflow.views.export_fcs.ExportFCSWorkflowView method)
enum_files() (cytoflow.views.export_fcs.ExportFCS method)
enum_plots() (cytoflow.operations.base_op_views.ByView method)
(cytoflow.views.bar_chart.BarChartView method)
(cytoflow.views.base_views.Base1DStatisticsView method)
(cytoflow.views.base_views.Base2DStatisticsView method)
(cytoflow.views.base_views.BaseStatisticsView method)
(cytoflow.views.stats_1d.Stats1DView method)
(cytoflow.views.stats_2d.Stats2DView method)
(cytoflowgui.workflow.operations.kmeans.KMeansWorkflowView method)
(cytoflowgui.workflow.operations.tasbe.TasbeWorkflowView method)
(cytoflowgui.workflow.views.view_base.WorkflowByView method)
(cytoflowgui.workflow.views.view_base.WorkflowFacetView method)
(cytoflowgui.workflow.views.view_base.WorkflowView method)
error_statistic (cytoflow.views.bar_chart.BarChartView attribute)
(cytoflow.views.base_views.Base1DStatisticsView attribute)
(cytoflow.views.stats_1d.Stats1DView attribute)
ESTIMATE (cytoflowgui.workflow.Changed attribute)
(cytoflowgui.workflow.workflow.Msg attribute)
estimate() (cytoflow.operations.autofluorescence.AutofluorescenceOp method)
(cytoflow.operations.bead_calibration.BeadCalibrationOp method)
(cytoflow.operations.bleedthrough_linear.BleedthroughLinearOp method)
(cytoflow.operations.color_translation.ColorTranslationOp method)
(cytoflow.operations.density.DensityGateOp method)
(cytoflow.operations.flowpeaks.FlowPeaksOp method)
(cytoflow.operations.gaussian.GaussianMixtureOp method)
(cytoflow.operations.i_operation.IOperation method)
(cytoflow.operations.kmeans.KMeansOp method)
(cytoflow.operations.pca.PCAOp method)
(cytoflowgui.workflow.operations.autofluorescence.AutofluorescenceWorkflowOp method)
(cytoflowgui.workflow.operations.bead_calibration.BeadCalibrationWorkflowOp method)
(cytoflowgui.workflow.operations.bleedthrough_linear.BleedthroughLinearWorkflowOp method)
(cytoflowgui.workflow.operations.color_translation.ColorTranslationWorkflowOp method)
(cytoflowgui.workflow.operations.flowpeaks.FlowPeaksWorkflowOp method)
(cytoflowgui.workflow.operations.gaussian_1d.GaussianMixture1DWorkflowOp method)
(cytoflowgui.workflow.operations.gaussian_2d.GaussianMixture2DWorkflowOp method)
(cytoflowgui.workflow.operations.import_op.ImportWorkflowOp method)
(cytoflowgui.workflow.operations.kmeans.KMeansWorkflowOp method)
(cytoflowgui.workflow.operations.pca.PCAWorkflowOp method)
(cytoflowgui.workflow.operations.tasbe.TasbeWorkflowOp method)
(cytoflowgui.workflow.workflow_item.WorkflowItem method)
estimate_error (cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
ESTIMATE_RESULT (cytoflowgui.workflow.Changed attribute)
estimate_warning (cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
EVAL (cytoflowgui.workflow.workflow.Msg attribute)
eval_bool() (in module cytoflowgui.import_dialog)
evaluate() (cytoflowgui.import_dialog.ConvertingBool method)
events (cytoflow.operations.import_op.ImportOp attribute)
exception (cytoflowgui.utility.event_tracer.ExitMessageRecord attribute)
EXEC (cytoflowgui.workflow.workflow.Msg attribute)
ExitMessageRecord (class in cytoflowgui.utility.event_tracer)
expand_class_attributes() (in module cytoflow.utility.docstring)
expand_method_parameters() (in module cytoflow.utility.docstring)
Experiment (class in cytoflow.experiment)
experiment (cytoflow.utility.logicle_scale.LogicleScale attribute)
(cytoflow.utility.scale.IScale attribute)
experiment_view() (cytoflowgui.workflow_controller.WorkflowController method)
(cytoflowgui.workflow_controller.WorkflowItemHandler method)
ExperimentBrowserDockPane (class in cytoflowgui.experiment_pane)
ExperimentColumn (class in cytoflowgui.import_dialog)
ExperimentDialogHandler (class in cytoflowgui.import_dialog)
ExperimentDialogModel (class in cytoflowgui.import_dialog)
export (cytoflowgui.view_plugins.export_fcs.ExportFCSHandler attribute)
(cytoflowgui.view_plugins.table.TableHandler attribute)
export() (cytoflow.views.export_fcs.ExportFCS method)
(cytoflow.views.table.TableView method)
export_pane (cytoflowgui.export_task.ExportTask attribute)
ExportFCS (class in cytoflow.views.export_fcs)
ExportFCSHandler (class in cytoflowgui.view_plugins.export_fcs)
ExportFCSPlugin (class in cytoflowgui.view_plugins.export_fcs)
ExportFCSWorkflowView (class in cytoflowgui.workflow.views.export_fcs)
ExportFigurePlugin (class in cytoflowgui.export_task)
ExportPane (class in cytoflowgui.export_task)
ExportTask (class in cytoflowgui.export_task)
ExportTaskPane (class in cytoflowgui.export_task)
ExtendableEnumEditor (class in cytoflowgui.editors.ext_enum_editor)
extra_items (cytoflowgui.editors.ext_enum_editor.ExtendableEnumEditor attribute)
F
facets (cytoflow.operations.base_op_views.ByView attribute)
(cytoflow.operations.density.DensityGateView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks1DView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks2DDensityView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks2DView attribute)
(cytoflow.operations.gaussian.GaussianMixture1DView attribute)
(cytoflow.operations.gaussian.GaussianMixture2DView attribute)
(cytoflow.operations.kmeans.KMeans1DView attribute)
(cytoflow.operations.kmeans.KMeans2DView attribute)
FigureCanvas (in module cytoflowgui.matplotlib_backend_remote)
FigureCanvasAggRemote (class in cytoflowgui.matplotlib_backend_remote)
FigureCanvasQTAggLocal (class in cytoflowgui.matplotlib_backend_local)
file (cytoflow.operations.import_op.Tube attribute)
(cytoflowgui.import_dialog.Tube attribute)
filename (cytoflowgui.cytoflow_application.CytoflowApplication attribute)
fill (cytoflow.operations.channel_stat.ChannelStatisticOp attribute)
(cytoflow.operations.frame_stat.FrameStatisticOp attribute)
(cytoflow.operations.xform_stat.TransformStatisticOp attribute)
filter() (cytoflow.utility.logging.MplFilter method)
filter_unpicklable() (in module cytoflowgui.workflow.workflow)
find_outliers (cytoflow.operations.flowpeaks.FlowPeaksOp attribute)
find_section() (in module cytoflow.utility.docstring)
floatable (cytoflowgui.experiment_pane.ExperimentBrowserDockPane attribute)
(cytoflowgui.export_task.ExportPane attribute)
(cytoflowgui.view_pane.PlotParamsPane attribute)
FloatOrNone (class in cytoflow.utility.custom_traits)
FlowPeaks1DView (class in cytoflow.operations.flowpeaks)
FlowPeaks2DDensityView (class in cytoflow.operations.flowpeaks)
FlowPeaks2DView (class in cytoflow.operations.flowpeaks)
FlowPeaksHandler (class in cytoflowgui.op_plugins.flowpeaks)
FlowPeaksOp (class in cytoflow.operations.flowpeaks)
FlowPeaksPlugin (class in cytoflowgui.op_plugins.flowpeaks)
FlowPeaksViewHandler (class in cytoflowgui.op_plugins.flowpeaks)
FlowPeaksWorkflowOp (class in cytoflowgui.workflow.operations.flowpeaks)
FlowPeaksWorkflowView (class in cytoflowgui.workflow.operations.flowpeaks)
force_linear (cytoflow.operations.bead_calibration.BeadCalibrationOp attribute)
foreground_color (cytoflowgui.editors.color_text_editor.ColorTextEditor attribute)
format_value() (cytoflowgui.experiment_pane_model.StringNode method)
FrameStatisticOp (class in cytoflow.operations.frame_stat)
friend_id (cytoflow.views.histogram_2d.Histogram2DView attribute)
friendly_id (cytoflow.operations.i_operation.IOperation attribute)
(cytoflow.views.i_view.IView attribute)
(cytoflowgui.workflow.operations.flowpeaks.FlowPeaksWorkflowView attribute)
(cytoflowgui.workflow.operations.kmeans.KMeansWorkflowView attribute)
(cytoflowgui.workflow.operations.tasbe.TasbeWorkflowView attribute)
(cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
(cytoflowgui.workflow_controller.WorkflowItemHandler attribute)
function (cytoflow.operations.channel_stat.ChannelStatisticOp attribute)
(cytoflow.operations.frame_stat.FrameStatisticOp attribute)
(cytoflow.operations.xform_stat.TransformStatisticOp attribute)
G
GaussianMixture1DHandler (class in cytoflowgui.op_plugins.gaussian_1d)
GaussianMixture1DPlugin (class in cytoflowgui.op_plugins.gaussian_1d)
GaussianMixture1DView (class in cytoflow.operations.gaussian)
GaussianMixture1DViewHandler (class in cytoflowgui.op_plugins.gaussian_1d)
GaussianMixture1DWorkflowOp (class in cytoflowgui.workflow.operations.gaussian_1d)
GaussianMixture1DWorkflowView (class in cytoflowgui.workflow.operations.gaussian_1d)
GaussianMixture2DHandler (class in cytoflowgui.op_plugins.gaussian_2d)
GaussianMixture2DPlugin (class in cytoflowgui.op_plugins.gaussian_2d)
GaussianMixture2DView (class in cytoflow.operations.gaussian)
GaussianMixture2DViewHandler (class in cytoflowgui.op_plugins.gaussian_2d)
GaussianMixture2DWorkflowOp (class in cytoflowgui.workflow.operations.gaussian_2d)
GaussianMixture2DWorkflowView (class in cytoflowgui.workflow.operations.gaussian_2d)
GaussianMixtureOp (class in cytoflow.operations.gaussian)
geom_mean() (in module cytoflow.utility.util_functions)
geom_sd() (in module cytoflow.utility.util_functions)
geom_sd_range() (in module cytoflow.utility.util_functions)
geom_sem() (in module cytoflow.utility.util_functions)
geom_sem_range() (in module cytoflow.utility.util_functions)
geomean_95ci() (in module cytoflowgui.workflow.operations.channel_stat)
(in module cytoflowgui.workflow.operations.xform_stat)
get() (cytoflow.utility.custom_traits.Deprecated method)
(cytoflow.utility.custom_traits.Removed method)
get_cell_color() (cytoflowgui.import_dialog.ExperimentColumn method)
get_change_event_collector() (cytoflowgui.utility.event_tracer.MultiThreadRecordContainer method)
get_class_attributes() (in module cytoflow.utility.docstring)
get_default_scale() (in module cytoflow.utility.scale)
get_default_value() (cytoflow.utility.custom_traits.ScaleEnum method)
get_handler() (cytoflowgui.op_plugins.autofluorescence.AutofluorescencePlugin method)
(cytoflowgui.op_plugins.bead_calibration.BeadCalibrationPlugin method)
(cytoflowgui.op_plugins.binning.BinningPlugin method)
(cytoflowgui.op_plugins.bleedthrough_linear.BleedthroughLinearPlugin method)
(cytoflowgui.op_plugins.channel_stat.ChannelStatisticPlugin method)
(cytoflowgui.op_plugins.color_translation.ColorTranslationPlugin method)
(cytoflowgui.op_plugins.density.DensityGatePlugin method)
(cytoflowgui.op_plugins.flowpeaks.FlowPeaksPlugin method)
(cytoflowgui.op_plugins.gaussian_1d.GaussianMixture1DPlugin method)
(cytoflowgui.op_plugins.gaussian_2d.GaussianMixture2DPlugin method)
(cytoflowgui.op_plugins.i_op_plugin.IOperationPlugin method)
(cytoflowgui.op_plugins.import_op.ImportPlugin method)
(cytoflowgui.op_plugins.kmeans.KMeansPlugin method)
(cytoflowgui.op_plugins.pca.PCAPlugin method)
(cytoflowgui.op_plugins.polygon.PolygonPlugin method)
(cytoflowgui.op_plugins.quad.QuadPlugin method)
(cytoflowgui.op_plugins.range.RangePlugin method)
(cytoflowgui.op_plugins.range2d.Range2DPlugin method)
(cytoflowgui.op_plugins.ratio.RatioPlugin method)
(cytoflowgui.op_plugins.tasbe.TasbePlugin method)
(cytoflowgui.op_plugins.threshold.ThresholdPlugin method)
(cytoflowgui.op_plugins.xform_stat.TransformStatisticPlugin method)
(cytoflowgui.view_plugins.bar_chart.BarChartPlugin method)
(cytoflowgui.view_plugins.density.DensityPlugin method)
(cytoflowgui.view_plugins.export_fcs.ExportFCSPlugin method)
(cytoflowgui.view_plugins.histogram.HistogramPlugin method)
(cytoflowgui.view_plugins.histogram_2d.Histogram2DPlugin method)
(cytoflowgui.view_plugins.i_view_plugin.IViewPlugin method)
(cytoflowgui.view_plugins.kde_1d.Kde1DPlugin method)
(cytoflowgui.view_plugins.kde_2d.Kde2DPlugin method)
(cytoflowgui.view_plugins.parallel_coords.ParallelCoordinatesPlugin method)
(cytoflowgui.view_plugins.radviz.RadvizPlugin method)
(cytoflowgui.view_plugins.scatterplot.ScatterplotPlugin method)
(cytoflowgui.view_plugins.stats_1d.Stats1DPlugin method)
(cytoflowgui.view_plugins.stats_2d.Stats2DPlugin method)
(cytoflowgui.view_plugins.table.TablePlugin method)
(cytoflowgui.view_plugins.violin.ViolinPlotPlugin method)
get_help() (cytoflowgui.op_plugins.i_op_plugin.IOperationPlugin method)
(cytoflowgui.op_plugins.op_plugin_base.PluginHelpMixin method)
(cytoflowgui.view_plugins.i_view_plugin.IViewPlugin method)
(cytoflowgui.view_plugins.view_plugin_base.PluginHelpMixin method)
get_icon() (cytoflowgui.op_plugins.autofluorescence.AutofluorescencePlugin method)
(cytoflowgui.op_plugins.bead_calibration.BeadCalibrationPlugin method)
(cytoflowgui.op_plugins.binning.BinningPlugin method)
(cytoflowgui.op_plugins.bleedthrough_linear.BleedthroughLinearPlugin method)
(cytoflowgui.op_plugins.channel_stat.ChannelStatisticPlugin method)
(cytoflowgui.op_plugins.color_translation.ColorTranslationPlugin method)
(cytoflowgui.op_plugins.density.DensityGatePlugin method)
(cytoflowgui.op_plugins.flowpeaks.FlowPeaksPlugin method)
(cytoflowgui.op_plugins.gaussian_1d.GaussianMixture1DPlugin method)
(cytoflowgui.op_plugins.gaussian_2d.GaussianMixture2DPlugin method)
(cytoflowgui.op_plugins.i_op_plugin.IOperationPlugin method)
(cytoflowgui.op_plugins.import_op.ImportPlugin method)
(cytoflowgui.op_plugins.kmeans.KMeansPlugin method)
(cytoflowgui.op_plugins.pca.PCAPlugin method)
(cytoflowgui.op_plugins.polygon.PolygonPlugin method)
(cytoflowgui.op_plugins.quad.QuadPlugin method)
(cytoflowgui.op_plugins.range.RangePlugin method)
(cytoflowgui.op_plugins.range2d.Range2DPlugin method)
(cytoflowgui.op_plugins.ratio.RatioPlugin method)
(cytoflowgui.op_plugins.tasbe.TasbePlugin method)
(cytoflowgui.op_plugins.threshold.ThresholdPlugin method)
(cytoflowgui.op_plugins.xform_stat.TransformStatisticPlugin method)
(cytoflowgui.view_plugins.bar_chart.BarChartPlugin method)
(cytoflowgui.view_plugins.density.DensityPlugin method)
(cytoflowgui.view_plugins.export_fcs.ExportFCSPlugin method)
(cytoflowgui.view_plugins.histogram.HistogramPlugin method)
(cytoflowgui.view_plugins.histogram_2d.Histogram2DPlugin method)
(cytoflowgui.view_plugins.i_view_plugin.IViewPlugin method)
(cytoflowgui.view_plugins.kde_1d.Kde1DPlugin method)
(cytoflowgui.view_plugins.kde_2d.Kde2DPlugin method)
(cytoflowgui.view_plugins.parallel_coords.ParallelCoordinatesPlugin method)
(cytoflowgui.view_plugins.radviz.RadvizPlugin method)
(cytoflowgui.view_plugins.scatterplot.ScatterplotPlugin method)
(cytoflowgui.view_plugins.stats_1d.Stats1DPlugin method)
(cytoflowgui.view_plugins.stats_2d.Stats2DPlugin method)
(cytoflowgui.view_plugins.table.TablePlugin method)
(cytoflowgui.view_plugins.violin.ViolinPlotPlugin method)
get_method_parameters() (in module cytoflow.utility.docstring)
get_mpl_params() (cytoflow.utility.hlog_scale.HlogScale method)
(cytoflow.utility.linear_scale.LinearScale method)
(cytoflow.utility.log_scale.LogScale method)
(cytoflow.utility.logicle_scale.LogicleScale method)
get_notebook_code() (cytoflowgui.workflow.operations.autofluorescence.AutofluorescenceWorkflowOp method)
(cytoflowgui.workflow.operations.autofluorescence.AutofluorescenceWorkflowView method)
(cytoflowgui.workflow.operations.bead_calibration.BeadCalibrationWorkflowOp method)
(cytoflowgui.workflow.operations.bead_calibration.BeadCalibrationWorkflowView method)
(cytoflowgui.workflow.operations.binning.BinningWorkflowOp method)
(cytoflowgui.workflow.operations.binning.BinningWorkflowView method)
(cytoflowgui.workflow.operations.bleedthrough_linear.BleedthroughLinearWorkflowOp method)
(cytoflowgui.workflow.operations.bleedthrough_linear.BleedthroughLinearWorkflowView method)
(cytoflowgui.workflow.operations.channel_stat.ChannelStatisticWorkflowOp method)
(cytoflowgui.workflow.operations.color_translation.ColorTranslationWorkflowOp method)
(cytoflowgui.workflow.operations.color_translation.ColorTranslationWorkflowView method)
(cytoflowgui.workflow.operations.density.DensityGateWorkflowOp method)
(cytoflowgui.workflow.operations.density.DensityGateWorkflowView method)
(cytoflowgui.workflow.operations.flowpeaks.FlowPeaksWorkflowOp method)
(cytoflowgui.workflow.operations.flowpeaks.FlowPeaksWorkflowView method)
(cytoflowgui.workflow.operations.gaussian_1d.GaussianMixture1DWorkflowOp method)
(cytoflowgui.workflow.operations.gaussian_1d.GaussianMixture1DWorkflowView method)
(cytoflowgui.workflow.operations.gaussian_2d.GaussianMixture2DWorkflowOp method)
(cytoflowgui.workflow.operations.gaussian_2d.GaussianMixture2DWorkflowView method)
(cytoflowgui.workflow.operations.import_op.ImportWorkflowOp method)
(cytoflowgui.workflow.operations.kmeans.KMeansWorkflowOp method)
(cytoflowgui.workflow.operations.kmeans.KMeansWorkflowView method)
(cytoflowgui.workflow.operations.operation_base.IWorkflowOperation method)
(cytoflowgui.workflow.operations.operation_base.WorkflowOperation method)
(cytoflowgui.workflow.operations.pca.PCAWorkflowOp method)
(cytoflowgui.workflow.operations.polygon.PolygonSelectionView method)
(cytoflowgui.workflow.operations.polygon.PolygonWorkflowOp method)
(cytoflowgui.workflow.operations.quad.QuadSelectionView method)
(cytoflowgui.workflow.operations.quad.QuadWorkflowOp method)
(cytoflowgui.workflow.operations.range.RangeSelectionView method)
(cytoflowgui.workflow.operations.range.RangeWorkflowOp method)
(cytoflowgui.workflow.operations.range2d.Range2DSelectionView method)
(cytoflowgui.workflow.operations.range2d.Range2DWorkflowOp method)
(cytoflowgui.workflow.operations.ratio.RatioWorkflowOp method)
(cytoflowgui.workflow.operations.tasbe.TasbeWorkflowOp method)
(cytoflowgui.workflow.operations.tasbe.TasbeWorkflowView method)
(cytoflowgui.workflow.operations.threshold.ThresholdSelectionView method)
(cytoflowgui.workflow.operations.threshold.ThresholdWorkflowOp method)
(cytoflowgui.workflow.operations.xform_stat.TransformStatisticWorkflowOp method)
(cytoflowgui.workflow.views.bar_chart.BarChartWorkflowView method)
(cytoflowgui.workflow.views.density.DensityWorkflowView method)
(cytoflowgui.workflow.views.export_fcs.ExportFCSWorkflowView method)
(cytoflowgui.workflow.views.histogram.HistogramWorkflowView method)
(cytoflowgui.workflow.views.histogram_2d.Histogram2DWorkflowView method)
(cytoflowgui.workflow.views.kde_1d.Kde1DWorkflowView method)
(cytoflowgui.workflow.views.kde_2d.Kde2DWorkflowView method)
(cytoflowgui.workflow.views.parallel_coords.ParallelCoordinatesWorkflowView method)
(cytoflowgui.workflow.views.radviz.RadvizWorkflowView method)
(cytoflowgui.workflow.views.scatterplot.ScatterplotWorkflowView method)
(cytoflowgui.workflow.views.stats_1d.Stats1DWorkflowView method)
(cytoflowgui.workflow.views.stats_2d.Stats2DWorkflowView method)
(cytoflowgui.workflow.views.table.TableWorkflowView method)
(cytoflowgui.workflow.views.view_base.IWorkflowView method)
(cytoflowgui.workflow.views.view_base.WorkflowView method)
(cytoflowgui.workflow.views.violin.ViolinPlotWorkflowView method)
get_operation() (cytoflowgui.op_plugins.autofluorescence.AutofluorescencePlugin method)
(cytoflowgui.op_plugins.bead_calibration.BeadCalibrationPlugin method)
(cytoflowgui.op_plugins.binning.BinningPlugin method)
(cytoflowgui.op_plugins.bleedthrough_linear.BleedthroughLinearPlugin method)
(cytoflowgui.op_plugins.channel_stat.ChannelStatisticPlugin method)
(cytoflowgui.op_plugins.color_translation.ColorTranslationPlugin method)
(cytoflowgui.op_plugins.density.DensityGatePlugin method)
(cytoflowgui.op_plugins.flowpeaks.FlowPeaksPlugin method)
(cytoflowgui.op_plugins.gaussian_1d.GaussianMixture1DPlugin method)
(cytoflowgui.op_plugins.gaussian_2d.GaussianMixture2DPlugin method)
(cytoflowgui.op_plugins.i_op_plugin.IOperationPlugin method)
(cytoflowgui.op_plugins.import_op.ImportPlugin method)
(cytoflowgui.op_plugins.kmeans.KMeansPlugin method)
(cytoflowgui.op_plugins.pca.PCAPlugin method)
(cytoflowgui.op_plugins.polygon.PolygonPlugin method)
(cytoflowgui.op_plugins.quad.QuadPlugin method)
(cytoflowgui.op_plugins.range.RangePlugin method)
(cytoflowgui.op_plugins.range2d.Range2DPlugin method)
(cytoflowgui.op_plugins.ratio.RatioPlugin method)
(cytoflowgui.op_plugins.tasbe.TasbePlugin method)
(cytoflowgui.op_plugins.threshold.ThresholdPlugin method)
(cytoflowgui.op_plugins.xform_stat.TransformStatisticPlugin method)
get_plugin() (cytoflowgui.view_plugins.i_view_plugin.IViewPlugin method)
get_transform() (cytoflow.utility.hlog_scale.MatplotlibHlogScale method)
(cytoflow.utility.logicle_scale.MatplotlibLogicleScale method)
get_view() (cytoflowgui.view_plugins.bar_chart.BarChartPlugin method)
(cytoflowgui.view_plugins.density.DensityPlugin method)
(cytoflowgui.view_plugins.export_fcs.ExportFCSPlugin method)
(cytoflowgui.view_plugins.histogram.HistogramPlugin method)
(cytoflowgui.view_plugins.histogram_2d.Histogram2DPlugin method)
(cytoflowgui.view_plugins.i_view_plugin.IViewPlugin method)
(cytoflowgui.view_plugins.kde_1d.Kde1DPlugin method)
(cytoflowgui.view_plugins.kde_2d.Kde2DPlugin method)
(cytoflowgui.view_plugins.parallel_coords.ParallelCoordinatesPlugin method)
(cytoflowgui.view_plugins.radviz.RadvizPlugin method)
(cytoflowgui.view_plugins.scatterplot.ScatterplotPlugin method)
(cytoflowgui.view_plugins.stats_1d.Stats1DPlugin method)
(cytoflowgui.view_plugins.stats_2d.Stats2DPlugin method)
(cytoflowgui.view_plugins.table.TablePlugin method)
(cytoflowgui.view_plugins.violin.ViolinPlotPlugin method)
gui_handler_callback() (in module cytoflowgui.cytoflow_application)
H
h (cytoflow.operations.flowpeaks.FlowPeaksOp attribute)
h0 (cytoflow.operations.flowpeaks.FlowPeaksOp attribute)
handler (cytoflowgui.experiment_pane.ExperimentBrowserDockPane attribute)
(cytoflowgui.export_task.ExportTask attribute)
(cytoflowgui.export_task.ExportTaskPane attribute)
(cytoflowgui.utility.event_tracer.CallingMessageRecord attribute)
(cytoflowgui.utility.event_tracer.ExitMessageRecord attribute)
(cytoflowgui.view_pane.PlotParamsPane attribute)
(cytoflowgui.view_pane.ViewDockPane attribute)
(cytoflowgui.workflow_pane.WorkflowDockPane attribute)
handler_factory (cytoflowgui.editors.instance_handler_editor.InstanceHandlerEditor attribute)
(cytoflowgui.editors.vertical_notebook_editor.VerticalNotebookEditor attribute)
handler_factory() (cytoflowgui.workflow_controller.WorkflowController method)
has_inverse (cytoflow.utility.hlog_scale.MatplotlibHlogScale.HlogTransform attribute)
(cytoflow.utility.hlog_scale.MatplotlibHlogScale.InvertedLogicleTransform attribute)
(cytoflow.utility.logicle_scale.MatplotlibLogicleScale.InvertedLogicleTransform attribute)
(cytoflow.utility.logicle_scale.MatplotlibLogicleScale.LogicleTransform attribute)
height (cytoflowgui.export_task.ExportTask attribute)
high (cytoflow.operations.range.RangeOp attribute)
high() (cytoflowgui.editors.range_slider.RangeSlider method)
hint_height (cytoflowgui.util.HintedMainWindow attribute)
(cytoflowgui.util.HintedWidget attribute)
hint_width (cytoflowgui.util.HintedMainWindow attribute)
(cytoflowgui.util.HintedWidget attribute)
HintedMainWindow (class in cytoflowgui.util)
HintedWidget (class in cytoflowgui.util)
Histogram2DHandler (class in cytoflowgui.view_plugins.histogram_2d)
Histogram2DParamsHandler (class in cytoflowgui.view_plugins.histogram_2d)
Histogram2DPlotParams (class in cytoflowgui.workflow.views.histogram_2d)
Histogram2DPlugin (class in cytoflowgui.view_plugins.histogram_2d)
Histogram2DView (class in cytoflow.views.histogram_2d)
Histogram2DWorkflowView (class in cytoflowgui.workflow.views.histogram_2d)
HistogramHandler (class in cytoflowgui.view_plugins.histogram)
HistogramParamsHandler (class in cytoflowgui.view_plugins.histogram)
HistogramPlotParams (class in cytoflowgui.workflow.views.histogram)
HistogramPlugin (class in cytoflowgui.view_plugins.histogram)
HistogramView (class in cytoflow.views.histogram)
HistogramWorkflowView (class in cytoflowgui.workflow.views.histogram)
history (cytoflow.experiment.Experiment attribute)
hlog() (in module cytoflow.utility.hlog_scale)
hlog_inv() (in module cytoflow.utility.hlog_scale)
HlogMajorLocator (class in cytoflow.utility.hlog_scale)
HlogMinorLocator (class in cytoflow.utility.hlog_scale)
HlogScale (class in cytoflow.utility.hlog_scale)
huefacet (cytoflow.operations.binning.BinningView attribute)
(cytoflow.operations.density.DensityGateView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks1DView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks2DDensityView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks2DView attribute)
(cytoflow.operations.gaussian.GaussianMixture1DView attribute)
(cytoflow.operations.gaussian.GaussianMixture2DView attribute)
(cytoflow.operations.kmeans.KMeans1DView attribute)
(cytoflow.operations.kmeans.KMeans2DView attribute)
(cytoflow.operations.polygon.DensityPolygonSelectionView attribute)
(cytoflow.operations.polygon.ScatterplotPolygonSelectionView attribute)
(cytoflow.operations.quad.DensityQuadSelectionView attribute)
(cytoflow.operations.quad.ScatterplotQuadSelectionView attribute)
(cytoflow.operations.range.RangeSelection attribute)
(cytoflow.operations.range2d.DensityRangeSelection2DView attribute)
(cytoflow.operations.range2d.ScatterplotRangeSelection2DView attribute)
(cytoflow.operations.threshold.ThresholdSelection attribute)
(cytoflow.views.bar_chart.BarChartView attribute)
(cytoflow.views.base_views.BaseView attribute)
(cytoflow.views.densityplot.DensityView attribute)
(cytoflow.views.histogram.HistogramView attribute)
(cytoflow.views.histogram_2d.Histogram2DView attribute)
(cytoflow.views.kde_1d.Kde1DView attribute)
(cytoflow.views.kde_2d.Kde2DView attribute)
(cytoflow.views.parallel_coords.ParallelCoordinatesView attribute)
(cytoflow.views.radviz.RadvizView attribute)
(cytoflow.views.scatterplot.ScatterplotView attribute)
(cytoflow.views.stats_1d.Stats1DView attribute)
(cytoflow.views.stats_2d.Stats2DView attribute)
(cytoflow.views.violin.ViolinPlotView attribute)
huescale (cytoflow.operations.binning.BinningView attribute)
(cytoflow.operations.density.DensityGateView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks1DView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks2DDensityView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks2DView attribute)
(cytoflow.operations.gaussian.GaussianMixture1DView attribute)
(cytoflow.operations.gaussian.GaussianMixture2DView attribute)
(cytoflow.operations.kmeans.KMeans1DView attribute)
(cytoflow.operations.kmeans.KMeans2DView attribute)
(cytoflow.operations.polygon.DensityPolygonSelectionView attribute)
(cytoflow.operations.polygon.ScatterplotPolygonSelectionView attribute)
(cytoflow.operations.quad.DensityQuadSelectionView attribute)
(cytoflow.operations.quad.ScatterplotQuadSelectionView attribute)
(cytoflow.operations.range.RangeSelection attribute)
(cytoflow.operations.range2d.DensityRangeSelection2DView attribute)
(cytoflow.operations.range2d.ScatterplotRangeSelection2DView attribute)
(cytoflow.operations.threshold.ThresholdSelection attribute)
(cytoflow.views.bar_chart.BarChartView attribute)
(cytoflow.views.base_views.BaseView attribute)
(cytoflow.views.densityplot.DensityView attribute)
(cytoflow.views.histogram.HistogramView attribute)
(cytoflow.views.histogram_2d.Histogram2DView attribute)
(cytoflow.views.kde_1d.Kde1DView attribute)
(cytoflow.views.kde_2d.Kde2DView attribute)
(cytoflow.views.parallel_coords.ParallelCoordinatesView attribute)
(cytoflow.views.radviz.RadvizView attribute)
(cytoflow.views.scatterplot.ScatterplotView attribute)
(cytoflow.views.stats_1d.Stats1DView attribute)
(cytoflow.views.stats_2d.Stats2DView attribute)
(cytoflow.views.violin.ViolinPlotView attribute)
I
icon (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute)
(cytoflowgui.workflow_controller.WorkflowItemHandler attribute)
icon_object (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute)
icon_object_trait (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute)
id (cytoflow.operations.i_operation.IOperation attribute)
(cytoflow.views.histogram_2d.Histogram2DView attribute)
(cytoflow.views.i_view.IView attribute)
(cytoflowgui.cytoflow_application.CytoflowApplication attribute)
(cytoflowgui.experiment_pane.ExperimentBrowserDockPane attribute)
(cytoflowgui.export_task.ExportPane attribute)
(cytoflowgui.export_task.ExportTaskPane attribute)
(cytoflowgui.op_plugins.i_op_plugin.IOperationPlugin attribute)
(cytoflowgui.view_pane.PlotParamsPane attribute)
(cytoflowgui.view_pane.ViewDockPane attribute)
(cytoflowgui.view_plugins.i_view_plugin.IViewPlugin attribute)
(cytoflowgui.workflow.operations.flowpeaks.FlowPeaksWorkflowView attribute)
(cytoflowgui.workflow.operations.kmeans.KMeansWorkflowView attribute)
(cytoflowgui.workflow.operations.tasbe.TasbeWorkflowView attribute)
(cytoflowgui.workflow_pane.WorkflowDockPane attribute)
ignore_v (cytoflow.operations.import_op.ImportOp attribute)
image_size (cytoflowgui.view_pane.ViewDockPane attribute)
(cytoflowgui.workflow_pane.WorkflowDockPane attribute)
import_csv (cytoflowgui.import_dialog.ExperimentDialogHandler attribute)
import_op (cytoflowgui.import_dialog.ExperimentDialogHandler attribute)
ImportHandler (class in cytoflowgui.op_plugins.import_op)
ImportOp (class in cytoflow.operations.import_op)
ImportPlugin (class in cytoflowgui.op_plugins.import_op)
ImportWorkflowOp (class in cytoflowgui.workflow.operations.import_op)
indent (cytoflowgui.utility.event_tracer.CallingMessageRecord attribute)
(cytoflowgui.utility.event_tracer.ChangeMessageRecord attribute)
(cytoflowgui.utility.event_tracer.ExitMessageRecord attribute)
index (cytoflowgui.import_dialog.Tube attribute)
indices (cytoflowgui.op_plugins.xform_stat.TransformStatisticHandler attribute)
(cytoflowgui.view_plugins.bar_chart.BarChartHandler attribute)
(cytoflowgui.view_plugins.stats_1d.Stats1DHandler attribute)
(cytoflowgui.view_plugins.stats_2d.Stats2DHandler attribute)
(cytoflowgui.view_plugins.table.TableHandler attribute)
info_text (cytoflow.utility.custom_traits.CFloatOrNone attribute)
(cytoflow.utility.custom_traits.CIntOrNone attribute)
(cytoflow.utility.custom_traits.FloatOrNone attribute)
(cytoflow.utility.custom_traits.IntOrNone attribute)
(cytoflow.utility.custom_traits.PositiveCFloat attribute)
(cytoflow.utility.custom_traits.PositiveCInt attribute)
(cytoflow.utility.custom_traits.PositiveFloat attribute)
(cytoflow.utility.custom_traits.PositiveInt attribute)
(cytoflow.utility.custom_traits.ScaleEnum attribute)
(cytoflowgui.workflow.operations.import_op.ValidPythonIdentifier attribute)
init() (cytoflowgui.import_dialog.ExperimentDialogHandler method)
(cytoflowgui.import_dialog.ExperimentDialogModel method)
input_dims (cytoflow.utility.hlog_scale.MatplotlibHlogScale.HlogTransform attribute)
(cytoflow.utility.hlog_scale.MatplotlibHlogScale.InvertedLogicleTransform attribute)
(cytoflow.utility.logicle_scale.MatplotlibLogicleScale.InvertedLogicleTransform attribute)
(cytoflow.utility.logicle_scale.MatplotlibLogicleScale.LogicleTransform attribute)
InstanceHandlerEditor (class in cytoflowgui.editors.instance_handler_editor)
interactive (cytoflow.operations.polygon.DensityPolygonSelectionView attribute)
(cytoflow.operations.polygon.ScatterplotPolygonSelectionView attribute)
(cytoflow.operations.quad.DensityQuadSelectionView attribute)
(cytoflow.operations.quad.ScatterplotQuadSelectionView attribute)
(cytoflow.operations.range.RangeSelection attribute)
(cytoflow.operations.range2d.DensityRangeSelection2DView attribute)
(cytoflow.operations.range2d.ScatterplotRangeSelection2DView attribute)
(cytoflow.operations.threshold.ThresholdSelection attribute)
(cytoflow.views.i_selectionview.ISelectionView attribute)
IntOrNone (class in cytoflow.utility.custom_traits)
inverse() (cytoflow.utility.hlog_scale.HlogScale method)
(cytoflow.utility.linear_scale.LinearScale method)
(cytoflow.utility.log_scale.LogScale method)
(cytoflow.utility.logicle_scale.LogicleScale method)
(cytoflow.utility.scale.IScale method)
inverted() (cytoflow.utility.hlog_scale.MatplotlibHlogScale.HlogTransform method)
(cytoflow.utility.hlog_scale.MatplotlibHlogScale.InvertedLogicleTransform method)
(cytoflow.utility.logicle_scale.MatplotlibLogicleScale.InvertedLogicleTransform method)
(cytoflow.utility.logicle_scale.MatplotlibLogicleScale.LogicleTransform method)
IOperation (class in cytoflow.operations.i_operation)
IOperationPlugin (class in cytoflowgui.op_plugins.i_op_plugin)
iqr() (in module cytoflow.utility.util_functions)
is_inside_sm() (in module cytoflow.utility.algorithms)
is_numeric() (in module cytoflow.utility.util_functions)
is_open (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute)
is_separable (cytoflow.utility.hlog_scale.MatplotlibHlogScale.HlogTransform attribute)
(cytoflow.utility.hlog_scale.MatplotlibHlogScale.InvertedLogicleTransform attribute)
(cytoflow.utility.logicle_scale.MatplotlibLogicleScale.InvertedLogicleTransform attribute)
(cytoflow.utility.logicle_scale.MatplotlibLogicleScale.LogicleTransform attribute)
is_tube_unique() (cytoflowgui.import_dialog.ExperimentDialogModel method)
IScale (class in cytoflow.utility.scale)
ISelectionView (class in cytoflow.views.i_selectionview)
ISubset (class in cytoflowgui.workflow.subset)
IterWrapper (class in cytoflowgui.workflow.views.view_base)
IView (class in cytoflow.views.i_view)
IViewPlugin (class in cytoflowgui.view_plugins.i_view_plugin)
IWorkflowOperation (class in cytoflowgui.workflow.operations.operation_base)
IWorkflowView (class in cytoflowgui.workflow.views.view_base)
K
Kde1DHandler (class in cytoflowgui.view_plugins.kde_1d)
Kde1DParamsHandler (class in cytoflowgui.view_plugins.kde_1d)
Kde1DPlotParams (class in cytoflowgui.workflow.views.kde_1d)
Kde1DPlugin (class in cytoflowgui.view_plugins.kde_1d)
Kde1DView (class in cytoflow.views.kde_1d)
Kde1DWorkflowView (class in cytoflowgui.workflow.views.kde_1d)
Kde2DHandler (class in cytoflowgui.view_plugins.kde_2d)
Kde2DParamsHandler (class in cytoflowgui.view_plugins.kde_2d)
Kde2DPlotParams (class in cytoflowgui.workflow.views.kde_2d)
Kde2DPlugin (class in cytoflowgui.view_plugins.kde_2d)
Kde2DView (class in cytoflow.views.kde_2d)
Kde2DWorkflowView (class in cytoflowgui.workflow.views.kde_2d)
keep (cytoflow.operations.density.DensityGateOp attribute)
keywords (cytoflow.views.export_fcs.ExportFCS attribute)
klass (cytoflowgui.editors.color_text_editor.ColorTextEditor attribute)
(cytoflowgui.editors.toggle_button.ToggleButtonEditor attribute)
(cytoflowgui.editors.vertical_notebook_editor.VerticalNotebookEditor attribute)
(cytoflowgui.editors.zoomable_html_editor.ZoomableHTMLEditor attribute)
KMeans1DView (class in cytoflow.operations.kmeans)
KMeans2DView (class in cytoflow.operations.kmeans)
KMeansHandler (class in cytoflowgui.op_plugins.kmeans)
KMeansOp (class in cytoflow.operations.kmeans)
KMeansPlugin (class in cytoflowgui.op_plugins.kmeans)
KMeansViewHandler (class in cytoflowgui.op_plugins.kmeans)
KMeansWorkflowOp (class in cytoflowgui.workflow.operations.kmeans)
KMeansWorkflowView (class in cytoflowgui.workflow.operations.kmeans)
L
label (cytoflowgui.editors.toggle_button.ToggleButtonEditor attribute)
(cytoflowgui.experiment_pane_model.ChannelsNode attribute)
(cytoflowgui.experiment_pane_model.ConditionsNode attribute)
(cytoflowgui.experiment_pane_model.StatisticsNode attribute)
(cytoflowgui.experiment_pane_model.StringNode attribute)
(cytoflowgui.experiment_pane_model.WorkflowItemNode attribute)
label_value (cytoflowgui.editors.toggle_button.ToggleButtonEditor attribute)
last_view_plotted (cytoflowgui.workflow.workflow.RemoteWorkflow attribute)
layout (cytoflowgui.export_task.ExportTaskPane attribute)
leaveEvent() (cytoflowgui.matplotlib_backend_local.FigureCanvasQTAggLocal method)
levels (cytoflowgui.op_plugins.xform_stat.TransformStatisticHandler attribute)
(cytoflowgui.view_plugins.bar_chart.BarChartHandler attribute)
(cytoflowgui.view_plugins.stats_1d.Stats1DHandler attribute)
(cytoflowgui.view_plugins.stats_2d.Stats2DHandler attribute)
(cytoflowgui.view_plugins.table.TableHandler attribute)
linear_model (cytoflow.operations.color_translation.ColorTranslationOp attribute)
LinearScale (class in cytoflow.utility.linear_scale)
listen_for_local() (cytoflowgui.matplotlib_backend_remote.FigureCanvasAggRemote method)
listen_for_remote() (cytoflowgui.matplotlib_backend_local.FigureCanvasQTAggLocal method)
load_yaml() (in module cytoflowgui.workflow.serialization)
LocalWorkflow (class in cytoflowgui.workflow.workflow)
lock (cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
log_excepthook() (in module cytoflowgui.run)
log_exception() (in module cytoflowgui.matplotlib_backend_local)
(in module cytoflowgui.matplotlib_backend_remote)
(in module cytoflowgui.utility.logging)
log_notification_handler() (in module cytoflowgui.run)
LogicleMajorLocator (class in cytoflow.utility.logicle_scale)
LogicleMinorLocator (class in cytoflow.utility.logicle_scale)
LogicleScale (class in cytoflow.utility.logicle_scale)
LogScale (class in cytoflow.utility.log_scale)
low (cytoflow.operations.range.RangeOp attribute)
low() (cytoflowgui.editors.range_slider.RangeSlider method)
M
M (cytoflow.utility.logicle_scale.LogicleScale attribute)
main() (in module cytoflow.scripts.channel_voltages)
(in module cytoflow.scripts.fcs_metadata)
(in module cytoflow.scripts.parse_beads)
(in module cytoflow.scripts.split_fcs)
matplotlib_events (cytoflowgui.workflow.workflow.RemoteWorkflow attribute)
(cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
MatplotlibHlogScale (class in cytoflow.utility.hlog_scale)
MatplotlibHlogScale.HlogTransform (class in cytoflow.utility.hlog_scale)
MatplotlibHlogScale.InvertedLogicleTransform (class in cytoflow.utility.hlog_scale)
MatplotlibLogicleScale (class in cytoflow.utility.logicle_scale)
MatplotlibLogicleScale.InvertedLogicleTransform (class in cytoflow.utility.logicle_scale)
MatplotlibLogicleScale.LogicleTransform (class in cytoflow.utility.logicle_scale)
max_quantile (cytoflow.operations.density.DensityGateOp attribute)
mean_95ci() (in module cytoflowgui.workflow.operations.channel_stat)
(in module cytoflowgui.workflow.operations.xform_stat)
menu_bar (cytoflowgui.export_task.ExportTask attribute)
menu_group (cytoflowgui.op_plugins.autofluorescence.AutofluorescencePlugin attribute)
(cytoflowgui.op_plugins.bead_calibration.BeadCalibrationPlugin attribute)
(cytoflowgui.op_plugins.binning.BinningPlugin attribute)
(cytoflowgui.op_plugins.bleedthrough_linear.BleedthroughLinearPlugin attribute)
(cytoflowgui.op_plugins.channel_stat.ChannelStatisticPlugin attribute)
(cytoflowgui.op_plugins.color_translation.ColorTranslationPlugin attribute)
(cytoflowgui.op_plugins.density.DensityGatePlugin attribute)
(cytoflowgui.op_plugins.flowpeaks.FlowPeaksPlugin attribute)
(cytoflowgui.op_plugins.gaussian_1d.GaussianMixture1DPlugin attribute)
(cytoflowgui.op_plugins.gaussian_2d.GaussianMixture2DPlugin attribute)
(cytoflowgui.op_plugins.import_op.ImportPlugin attribute)
(cytoflowgui.op_plugins.kmeans.KMeansPlugin attribute)
(cytoflowgui.op_plugins.pca.PCAPlugin attribute)
(cytoflowgui.op_plugins.polygon.PolygonPlugin attribute)
(cytoflowgui.op_plugins.quad.QuadPlugin attribute)
(cytoflowgui.op_plugins.range.RangePlugin attribute)
(cytoflowgui.op_plugins.range2d.Range2DPlugin attribute)
(cytoflowgui.op_plugins.ratio.RatioPlugin attribute)
(cytoflowgui.op_plugins.tasbe.TasbePlugin attribute)
(cytoflowgui.op_plugins.threshold.ThresholdPlugin attribute)
(cytoflowgui.op_plugins.xform_stat.TransformStatisticPlugin attribute)
merge_dist (cytoflow.operations.flowpeaks.FlowPeaksOp attribute)
message_q (cytoflowgui.workflow.workflow.LocalWorkflow attribute)
(cytoflowgui.workflow.workflow.RemoteWorkflow attribute)
metadata (cytoflow.experiment.Experiment attribute)
(cytoflowgui.editors.subset_list_editor.SubsetListEditor attribute)
(cytoflowgui.import_dialog.Tube attribute)
(cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
min_quantile (cytoflow.operations.density.DensityGateOp attribute)
min_size (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute)
mixture_model (cytoflow.operations.color_translation.ColorTranslationOp attribute)
model (cytoflowgui.cytoflow_application.CytoflowApplication attribute)
(cytoflowgui.export_task.ExportTask attribute)
(cytoflowgui.export_task.ExportTaskPane attribute)
(cytoflowgui.import_dialog.TubeTrait attribute)
model_factory (cytoflowgui.preferences.CytoflowPreferencesPane attribute)
modified (cytoflowgui.workflow.workflow.LocalWorkflow attribute)
module
cytoflow
cytoflow.experiment
cytoflow.operations
cytoflow.operations.autofluorescence
cytoflow.operations.base_op_views
cytoflow.operations.bead_calibration
cytoflow.operations.binning
cytoflow.operations.bleedthrough_linear
cytoflow.operations.channel_stat
cytoflow.operations.color_translation
cytoflow.operations.density
cytoflow.operations.flowpeaks
cytoflow.operations.frame_stat
cytoflow.operations.gaussian
cytoflow.operations.i_operation
cytoflow.operations.import_op
cytoflow.operations.kmeans
cytoflow.operations.pca
cytoflow.operations.polygon
cytoflow.operations.quad
cytoflow.operations.range
cytoflow.operations.range2d
cytoflow.operations.ratio
cytoflow.operations.threshold
cytoflow.operations.xform_stat
cytoflow.scripts
cytoflow.scripts.channel_voltages
cytoflow.scripts.fcs_metadata
cytoflow.scripts.parse_beads
cytoflow.scripts.split_fcs
cytoflow.utility
cytoflow.utility.algorithms
cytoflow.utility.custom_traits
cytoflow.utility.cytoflow_errors
cytoflow.utility.docstring
cytoflow.utility.fcswrite
cytoflow.utility.hlog_scale
cytoflow.utility.linear_scale
cytoflow.utility.log_scale
cytoflow.utility.logging
cytoflow.utility.logicle_scale
cytoflow.utility.scale
cytoflow.utility.util_functions
cytoflow.views
cytoflow.views.bar_chart
cytoflow.views.base_views
cytoflow.views.densityplot
cytoflow.views.export_fcs
cytoflow.views.histogram
cytoflow.views.histogram_2d
cytoflow.views.i_selectionview
cytoflow.views.i_view
cytoflow.views.kde_1d
cytoflow.views.kde_2d
cytoflow.views.parallel_coords
cytoflow.views.radviz
cytoflow.views.scatterplot
cytoflow.views.stats_1d
cytoflow.views.stats_2d
cytoflow.views.table
cytoflow.views.violin
cytoflowgui
cytoflowgui.cytoflow_application
cytoflowgui.editors
cytoflowgui.editors.color_text_editor
cytoflowgui.editors.ext_enum_editor
cytoflowgui.editors.instance_handler_editor
cytoflowgui.editors.range_slider
cytoflowgui.editors.subset_list_editor
cytoflowgui.editors.tab_list_editor
cytoflowgui.editors.toggle_button
cytoflowgui.editors.value_bounds_editor
cytoflowgui.editors.vertical_list_editor
cytoflowgui.editors.vertical_notebook
cytoflowgui.editors.vertical_notebook_editor
cytoflowgui.editors.zoomable_html_editor
cytoflowgui.experiment_pane
cytoflowgui.experiment_pane_model
cytoflowgui.export_task
cytoflowgui.import_dialog
cytoflowgui.matplotlib_backend_local
cytoflowgui.matplotlib_backend_remote
cytoflowgui.op_plugins
cytoflowgui.op_plugins.autofluorescence
cytoflowgui.op_plugins.bead_calibration
cytoflowgui.op_plugins.binning
cytoflowgui.op_plugins.bleedthrough_linear
cytoflowgui.op_plugins.channel_stat
cytoflowgui.op_plugins.color_translation
cytoflowgui.op_plugins.density
cytoflowgui.op_plugins.flowpeaks
cytoflowgui.op_plugins.gaussian_1d
cytoflowgui.op_plugins.gaussian_2d
cytoflowgui.op_plugins.i_op_plugin
cytoflowgui.op_plugins.import_op
cytoflowgui.op_plugins.kmeans
cytoflowgui.op_plugins.op_plugin_base
cytoflowgui.op_plugins.pca
cytoflowgui.op_plugins.polygon
cytoflowgui.op_plugins.quad
cytoflowgui.op_plugins.range
cytoflowgui.op_plugins.range2d
cytoflowgui.op_plugins.ratio
cytoflowgui.op_plugins.tasbe
cytoflowgui.op_plugins.threshold
cytoflowgui.op_plugins.xform_stat
cytoflowgui.preferences
cytoflowgui.run
cytoflowgui.subset_controllers
cytoflowgui.util
cytoflowgui.utility
cytoflowgui.utility.event_tracer
cytoflowgui.utility.logging
cytoflowgui.view_pane
cytoflowgui.view_plugins
cytoflowgui.view_plugins.bar_chart
cytoflowgui.view_plugins.density
cytoflowgui.view_plugins.export_fcs
cytoflowgui.view_plugins.histogram
cytoflowgui.view_plugins.histogram_2d
cytoflowgui.view_plugins.i_view_plugin
cytoflowgui.view_plugins.kde_1d
cytoflowgui.view_plugins.kde_2d
cytoflowgui.view_plugins.parallel_coords
cytoflowgui.view_plugins.radviz
cytoflowgui.view_plugins.scatterplot
cytoflowgui.view_plugins.stats_1d
cytoflowgui.view_plugins.stats_2d
cytoflowgui.view_plugins.table
cytoflowgui.view_plugins.view_plugin_base
cytoflowgui.view_plugins.violin
cytoflowgui.workflow
cytoflowgui.workflow.operations
cytoflowgui.workflow.operations.autofluorescence
cytoflowgui.workflow.operations.bead_calibration
cytoflowgui.workflow.operations.binning
cytoflowgui.workflow.operations.bleedthrough_linear
cytoflowgui.workflow.operations.channel_stat
cytoflowgui.workflow.operations.color_translation
cytoflowgui.workflow.operations.density
cytoflowgui.workflow.operations.flowpeaks
cytoflowgui.workflow.operations.gaussian_1d
cytoflowgui.workflow.operations.gaussian_2d
cytoflowgui.workflow.operations.import_op
cytoflowgui.workflow.operations.kmeans
cytoflowgui.workflow.operations.operation_base
cytoflowgui.workflow.operations.pca
cytoflowgui.workflow.operations.polygon
cytoflowgui.workflow.operations.quad
cytoflowgui.workflow.operations.range
cytoflowgui.workflow.operations.range2d
cytoflowgui.workflow.operations.ratio
cytoflowgui.workflow.operations.tasbe
cytoflowgui.workflow.operations.threshold
cytoflowgui.workflow.operations.xform_stat
cytoflowgui.workflow.serialization
cytoflowgui.workflow.subset
cytoflowgui.workflow.views
cytoflowgui.workflow.views.bar_chart
cytoflowgui.workflow.views.density
cytoflowgui.workflow.views.export_fcs
cytoflowgui.workflow.views.histogram
cytoflowgui.workflow.views.histogram_2d
cytoflowgui.workflow.views.kde_1d
cytoflowgui.workflow.views.kde_2d
cytoflowgui.workflow.views.parallel_coords
cytoflowgui.workflow.views.radviz
cytoflowgui.workflow.views.scatterplot
cytoflowgui.workflow.views.stats_1d
cytoflowgui.workflow.views.stats_2d
cytoflowgui.workflow.views.table
cytoflowgui.workflow.views.view_base
cytoflowgui.workflow.views.violin
cytoflowgui.workflow.workflow
cytoflowgui.workflow.workflow_item
cytoflowgui.workflow_controller
cytoflowgui.workflow_pane
monitor_remote_process() (in module cytoflowgui.run)
MOUSE_DOUBLE_CLICK_EVENT (cytoflowgui.matplotlib_backend_local.Msg attribute)
(cytoflowgui.matplotlib_backend_remote.Msg attribute)
MOUSE_MOVE_EVENT (cytoflowgui.matplotlib_backend_local.Msg attribute)
(cytoflowgui.matplotlib_backend_remote.Msg attribute)
MOUSE_PRESS_EVENT (cytoflowgui.matplotlib_backend_local.Msg attribute)
(cytoflowgui.matplotlib_backend_remote.Msg attribute)
MOUSE_RELEASE_EVENT (cytoflowgui.matplotlib_backend_local.Msg attribute)
(cytoflowgui.matplotlib_backend_remote.Msg attribute)
mouseDoubleClickEvent() (cytoflowgui.matplotlib_backend_local.FigureCanvasQTAggLocal method)
mouseMoveEvent() (cytoflowgui.editors.range_slider.RangeSlider method)
(cytoflowgui.matplotlib_backend_local.FigureCanvasQTAggLocal method)
mousePressEvent() (cytoflowgui.editors.range_slider.RangeSlider method)
(cytoflowgui.matplotlib_backend_local.FigureCanvasQTAggLocal method)
mouseReleaseEvent() (cytoflowgui.editors.range_slider.RangeSlider method)
(cytoflowgui.matplotlib_backend_local.FigureCanvasQTAggLocal method)
movable (cytoflowgui.experiment_pane.ExperimentBrowserDockPane attribute)
(cytoflowgui.export_task.ExportPane attribute)
(cytoflowgui.view_pane.PlotParamsPane attribute)
MplFilter (class in cytoflow.utility.logging)
Msg (class in cytoflowgui.matplotlib_backend_local)
(class in cytoflowgui.matplotlib_backend_remote)
(class in cytoflowgui.workflow.workflow)
multiple_open (cytoflowgui.editors.vertical_notebook.VerticalNotebook attribute)
(cytoflowgui.editors.vertical_notebook_editor.VerticalNotebookEditor attribute)
MultiThreadChangeEventRecorder (class in cytoflowgui.utility.event_tracer)
MultiThreadRecordContainer (class in cytoflowgui.utility.event_tracer)
mutable (cytoflowgui.editors.subset_list_editor.SubsetListEditor attribute)
N
name (cytoflow.operations.binning.BinningOp attribute)
(cytoflow.operations.channel_stat.ChannelStatisticOp attribute)
(cytoflow.operations.color_translation.ColorTranslationDiagnostic attribute)
(cytoflow.operations.density.DensityGateOp attribute)
(cytoflow.operations.flowpeaks.FlowPeaksOp attribute)
(cytoflow.operations.frame_stat.FrameStatisticOp attribute)
(cytoflow.operations.gaussian.GaussianMixtureOp attribute)
(cytoflow.operations.i_operation.IOperation attribute)
(cytoflow.operations.kmeans.KMeansOp attribute)
(cytoflow.operations.pca.PCAOp attribute)
(cytoflow.operations.polygon.PolygonOp attribute)
(cytoflow.operations.quad.QuadOp attribute)
(cytoflow.operations.range.RangeOp attribute)
(cytoflow.operations.range2d.Range2DOp attribute)
(cytoflow.operations.ratio.RatioOp attribute)
(cytoflow.operations.threshold.ThresholdOp attribute)
(cytoflow.operations.xform_stat.TransformStatisticOp attribute)
(cytoflow.utility.hlog_scale.HlogScale attribute)
(cytoflow.utility.hlog_scale.MatplotlibHlogScale attribute)
(cytoflow.utility.linear_scale.LinearScale attribute)
(cytoflow.utility.log_scale.LogScale attribute)
(cytoflow.utility.logicle_scale.LogicleScale attribute)
(cytoflow.utility.logicle_scale.MatplotlibLogicleScale attribute)
(cytoflow.utility.scale.IScale attribute)
(cytoflowgui.cytoflow_application.CytoflowApplication attribute)
(cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute)
(cytoflowgui.experiment_pane.ExperimentBrowserDockPane attribute)
(cytoflowgui.experiment_pane_model.StringNode attribute)
(cytoflowgui.export_task.ExportPane attribute)
(cytoflowgui.export_task.ExportTaskPane attribute)
(cytoflowgui.import_dialog.TubeTrait attribute)
(cytoflowgui.utility.event_tracer.ChangeMessageRecord attribute)
(cytoflowgui.view_pane.PlotParamsPane attribute)
(cytoflowgui.view_pane.ViewDockPane attribute)
(cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
(cytoflowgui.workflow_controller.WorkflowItemHandler attribute)
(cytoflowgui.workflow_pane.WorkflowDockPane attribute)
name_metadata (cytoflow.operations.import_op.ImportOp attribute)
name_object (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute)
name_object_trait (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute)
new (cytoflowgui.utility.event_tracer.ChangeMessageRecord attribute)
new_figure_manager() (in module cytoflowgui.matplotlib_backend_remote)
NEW_WORKFLOW (cytoflowgui.workflow.workflow.Msg attribute)
next_wi (cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
NO_MODEL (cytoflowgui.workflow.operations.tasbe.Progress attribute)
norm() (cytoflow.utility.hlog_scale.HlogScale method)
(cytoflow.utility.linear_scale.LinearScale method)
(cytoflow.utility.log_scale.LogScale method)
(cytoflow.utility.logicle_scale.LogicleScale method)
(cytoflow.utility.scale.IScale method)
not_false() (in module cytoflowgui.import_dialog)
not_true() (in module cytoflowgui.import_dialog)
NullView (class in cytoflow.operations.base_op_views)
num_clusters (cytoflow.operations.kmeans.KMeansOp attribute)
num_components (cytoflow.operations.gaussian.GaussianMixtureOp attribute)
(cytoflow.operations.pca.PCAOp attribute)
num_hist_bins() (in module cytoflow.utility.util_functions)
numerator (cytoflow.operations.ratio.RatioOp attribute)
numeric_indices (cytoflowgui.view_plugins.stats_1d.Stats1DHandler attribute)
(cytoflowgui.view_plugins.stats_2d.Stats2DHandler attribute)
numeric_statistics_names (cytoflowgui.workflow_controller.WorkflowItemHandler attribute)
O
old (cytoflowgui.utility.event_tracer.ChangeMessageRecord attribute)
on_export() (cytoflowgui.export_task.ExportTask method)
op (cytoflow.operations.autofluorescence.AutofluorescenceDiagnosticView attribute)
(cytoflow.operations.base_op_views.OpView attribute)
(cytoflow.operations.bead_calibration.BeadCalibrationDiagnostic attribute)
(cytoflow.operations.binning.BinningView attribute)
(cytoflow.operations.bleedthrough_linear.BleedthroughLinearDiagnostic attribute)
(cytoflow.operations.color_translation.ColorTranslationDiagnostic attribute)
(cytoflow.operations.density.DensityGateView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks1DView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks2DDensityView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks2DView attribute)
(cytoflow.operations.gaussian.GaussianMixture1DView attribute)
(cytoflow.operations.gaussian.GaussianMixture2DView attribute)
(cytoflow.operations.kmeans.KMeans1DView attribute)
(cytoflow.operations.kmeans.KMeans2DView attribute)
(cytoflow.operations.polygon.DensityPolygonSelectionView attribute)
(cytoflow.operations.polygon.ScatterplotPolygonSelectionView attribute)
(cytoflow.operations.quad.DensityQuadSelectionView attribute)
(cytoflow.operations.quad.ScatterplotQuadSelectionView attribute)
(cytoflow.operations.range.RangeSelection attribute)
(cytoflow.operations.range2d.DensityRangeSelection2DView attribute)
(cytoflow.operations.range2d.ScatterplotRangeSelection2DView attribute)
(cytoflow.operations.threshold.ThresholdSelection attribute)
Op1DView (class in cytoflow.operations.base_op_views)
Op2DView (class in cytoflow.operations.base_op_views)
op_error (cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
op_error_trait (cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
op_plugins (cytoflowgui.workflow_controller.WorkflowController attribute)
(cytoflowgui.workflow_controller.WorkflowItemHandler attribute)
OP_STATUS (cytoflowgui.workflow.Changed attribute)
op_warning (cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
op_warning_trait (cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
open() (cytoflowgui.editors.vertical_notebook.VerticalNotebook method)
operation (cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
operation_id (cytoflowgui.op_plugins.autofluorescence.AutofluorescencePlugin attribute)
(cytoflowgui.op_plugins.bead_calibration.BeadCalibrationPlugin attribute)
(cytoflowgui.op_plugins.binning.BinningPlugin attribute)
(cytoflowgui.op_plugins.bleedthrough_linear.BleedthroughLinearPlugin attribute)
(cytoflowgui.op_plugins.channel_stat.ChannelStatisticPlugin attribute)
(cytoflowgui.op_plugins.color_translation.ColorTranslationPlugin attribute)
(cytoflowgui.op_plugins.density.DensityGatePlugin attribute)
(cytoflowgui.op_plugins.flowpeaks.FlowPeaksPlugin attribute)
(cytoflowgui.op_plugins.gaussian_1d.GaussianMixture1DPlugin attribute)
(cytoflowgui.op_plugins.gaussian_2d.GaussianMixture2DPlugin attribute)
(cytoflowgui.op_plugins.i_op_plugin.IOperationPlugin attribute)
(cytoflowgui.op_plugins.import_op.ImportPlugin attribute)
(cytoflowgui.op_plugins.kmeans.KMeansPlugin attribute)
(cytoflowgui.op_plugins.pca.PCAPlugin attribute)
(cytoflowgui.op_plugins.polygon.PolygonPlugin attribute)
(cytoflowgui.op_plugins.quad.QuadPlugin attribute)
(cytoflowgui.op_plugins.range.RangePlugin attribute)
(cytoflowgui.op_plugins.range2d.Range2DPlugin attribute)
(cytoflowgui.op_plugins.ratio.RatioPlugin attribute)
(cytoflowgui.op_plugins.tasbe.TasbePlugin attribute)
(cytoflowgui.op_plugins.threshold.ThresholdPlugin attribute)
(cytoflowgui.op_plugins.xform_stat.TransformStatisticPlugin attribute)
operation_traits_view() (cytoflowgui.workflow_controller.WorkflowItemHandler method)
OpHandler (class in cytoflowgui.op_plugins.op_plugin_base)
OpPluginManager (class in cytoflowgui.op_plugins.i_op_plugin)
OpView (class in cytoflow.operations.base_op_views)
output_dims (cytoflow.utility.hlog_scale.MatplotlibHlogScale.HlogTransform attribute)
(cytoflow.utility.hlog_scale.MatplotlibHlogScale.InvertedLogicleTransform attribute)
(cytoflow.utility.logicle_scale.MatplotlibLogicleScale.InvertedLogicleTransform attribute)
(cytoflow.utility.logicle_scale.MatplotlibLogicleScale.LogicleTransform attribute)
P
page_deletable (cytoflowgui.editors.vertical_notebook_editor.VerticalNotebookEditor attribute)
page_description (cytoflowgui.editors.vertical_notebook_editor.VerticalNotebookEditor attribute)
page_icon (cytoflowgui.editors.vertical_notebook_editor.VerticalNotebookEditor attribute)
page_name (cytoflowgui.editors.vertical_notebook_editor.VerticalNotebookEditor attribute)
pages (cytoflowgui.editors.vertical_notebook.VerticalNotebook attribute)
paintEvent() (cytoflowgui.editors.range_slider.RangeSlider method)
(cytoflowgui.matplotlib_backend_local.FigureCanvasQTAggLocal method)
ParallelCoordinatesHandler (class in cytoflowgui.view_plugins.parallel_coords)
ParallelCoordinatesParamsHandler (class in cytoflowgui.view_plugins.parallel_coords)
ParallelCoordinatesPlotParams (class in cytoflowgui.workflow.views.parallel_coords)
ParallelCoordinatesPlugin (class in cytoflowgui.view_plugins.parallel_coords)
ParallelCoordinatesView (class in cytoflow.views.parallel_coords)
ParallelCoordinatesWorkflowView (class in cytoflowgui.workflow.views.parallel_coords)
params_pane (cytoflowgui.export_task.ExportTask attribute)
parent (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute)
(cytoflowgui.import_dialog.Tube attribute)
parse_tube() (in module cytoflow.operations.import_op)
path (cytoflow.views.export_fcs.ExportFCS attribute)
PCAHandler (class in cytoflowgui.op_plugins.pca)
PCAOp (class in cytoflow.operations.pca)
PCAPlugin (class in cytoflowgui.op_plugins.pca)
PCAWorkflowOp (class in cytoflowgui.workflow.operations.pca)
percentiles() (in module cytoflow.utility.algorithms)
plot() (cytoflow.operations.autofluorescence.AutofluorescenceDiagnosticView method)
(cytoflow.operations.base_op_views.AnnotatingView method)
(cytoflow.operations.base_op_views.ByView method)
(cytoflow.operations.bead_calibration.BeadCalibrationDiagnostic method)
(cytoflow.operations.binning.BinningView method)
(cytoflow.operations.bleedthrough_linear.BleedthroughLinearDiagnostic method)
(cytoflow.operations.color_translation.ColorTranslationDiagnostic method)
(cytoflow.operations.density.DensityGateView method)
(cytoflow.operations.flowpeaks.FlowPeaks1DView method)
(cytoflow.operations.flowpeaks.FlowPeaks2DDensityView method)
(cytoflow.operations.flowpeaks.FlowPeaks2DView method)
(cytoflow.operations.gaussian.GaussianMixture1DView method)
(cytoflow.operations.gaussian.GaussianMixture2DView method)
(cytoflow.operations.kmeans.KMeans1DView method)
(cytoflow.operations.kmeans.KMeans2DView method)
(cytoflow.operations.polygon.DensityPolygonSelectionView method)
(cytoflow.operations.polygon.ScatterplotPolygonSelectionView method)
(cytoflow.operations.quad.DensityQuadSelectionView method)
(cytoflow.operations.quad.ScatterplotQuadSelectionView method)
(cytoflow.operations.range.RangeSelection method)
(cytoflow.operations.threshold.ThresholdSelection method)
(cytoflow.views.bar_chart.BarChartView method)
(cytoflow.views.base_views.Base1DStatisticsView method)
(cytoflow.views.base_views.Base1DView method)
(cytoflow.views.base_views.Base2DStatisticsView method)
(cytoflow.views.base_views.Base2DView method)
(cytoflow.views.base_views.BaseDataView method)
(cytoflow.views.base_views.BaseNDView method)
(cytoflow.views.base_views.BaseStatisticsView method)
(cytoflow.views.base_views.BaseView method)
(cytoflow.views.densityplot.DensityView method)
(cytoflow.views.histogram.HistogramView method)
(cytoflow.views.histogram_2d.Histogram2DView method)
(cytoflow.views.i_view.IView method)
(cytoflow.views.kde_1d.Kde1DView method)
(cytoflow.views.kde_2d.Kde2DView method)
(cytoflow.views.parallel_coords.ParallelCoordinatesView method)
(cytoflow.views.radviz.RadvizView method)
(cytoflow.views.scatterplot.ScatterplotView method)
(cytoflow.views.stats_1d.Stats1DView method)
(cytoflow.views.stats_2d.Stats2DView method)
(cytoflow.views.table.TableView method)
(cytoflow.views.violin.ViolinPlotView method)
(cytoflowgui.workflow.operations.flowpeaks.FlowPeaksWorkflowView method)
(cytoflowgui.workflow.operations.gaussian_1d.GaussianMixture1DWorkflowView method)
(cytoflowgui.workflow.operations.gaussian_2d.GaussianMixture2DWorkflowView method)
(cytoflowgui.workflow.operations.kmeans.KMeansWorkflowView method)
(cytoflowgui.workflow.operations.tasbe.TasbeWorkflowView method)
(cytoflowgui.workflow.views.export_fcs.ExportFCSWorkflowView method)
(cytoflowgui.workflow.views.table.TableWorkflowView method)
(cytoflowgui.workflow.views.view_base.WorkflowByView method)
(cytoflowgui.workflow.views.view_base.WorkflowFacetView method)
(cytoflowgui.workflow.workflow_item.WorkflowItem method)
PLOT_CALLED (cytoflowgui.workflow.workflow.Msg attribute)
plot_lock (cytoflowgui.workflow.workflow.RemoteWorkflow attribute)
(cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
plot_names (cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
plot_names_label (cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
plotfacet (cytoflowgui.workflow.views.view_base.WorkflowFacetView attribute)
PlotParamsPane (class in cytoflowgui.view_pane)
PluginHelpMixin (class in cytoflowgui.op_plugins.op_plugin_base)
(class in cytoflowgui.view_plugins.view_plugin_base)
plugins (cytoflowgui.workflow_pane.WorkflowDockPane attribute)
poly_area() (in module cytoflow.operations.gaussian)
polygon_contains() (in module cytoflow.utility.algorithms)
PolygonHandler (class in cytoflowgui.op_plugins.polygon)
PolygonOp (class in cytoflow.operations.polygon)
PolygonPlugin (class in cytoflowgui.op_plugins.polygon)
PolygonSelectionView (class in cytoflowgui.workflow.operations.polygon)
PolygonViewHandler (class in cytoflowgui.op_plugins.polygon)
PolygonWorkflowOp (class in cytoflowgui.workflow.operations.polygon)
PositiveCFloat (class in cytoflow.utility.custom_traits)
PositiveCInt (class in cytoflow.utility.custom_traits)
PositiveFloat (class in cytoflow.utility.custom_traits)
PositiveInt (class in cytoflow.utility.custom_traits)
post_tracer() (cytoflowgui.utility.event_tracer.ChangeEventRecorder method)
(cytoflowgui.utility.event_tracer.MultiThreadChangeEventRecorder method)
posteriors (cytoflow.operations.gaussian.GaussianMixtureOp attribute)
pre_tracer() (cytoflowgui.utility.event_tracer.ChangeEventRecorder method)
(cytoflowgui.utility.event_tracer.MultiThreadChangeEventRecorder method)
preferences_helper (cytoflowgui.cytoflow_application.CytoflowApplication attribute)
preferences_path (cytoflowgui.preferences.CytoflowPreferences attribute)
PREV_RESULT (cytoflowgui.workflow.Changed attribute)
previous_channels (cytoflowgui.workflow_controller.WorkflowItemHandler attribute)
previous_conditions (cytoflowgui.workflow_controller.WorkflowItemHandler attribute)
previous_conditions_names (cytoflowgui.workflow_controller.WorkflowItemHandler attribute)
previous_statistics_names (cytoflowgui.workflow_controller.WorkflowItemHandler attribute)
previous_wi (cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
PRINT (cytoflowgui.matplotlib_backend_local.Msg attribute)
(cytoflowgui.matplotlib_backend_remote.Msg attribute)
print_figure() (cytoflowgui.matplotlib_backend_local.FigureCanvasQTAggLocal method)
Progress (class in cytoflowgui.workflow.operations.tasbe)
Q
QuadHandler (class in cytoflowgui.op_plugins.quad)
QuadOp (class in cytoflow.operations.quad)
QuadPlugin (class in cytoflowgui.op_plugins.quad)
QuadSelectionView (class in cytoflowgui.workflow.operations.quad)
QuadViewHandler (class in cytoflowgui.op_plugins.quad)
QuadWorkflowOp (class in cytoflowgui.workflow.operations.quad)
query() (cytoflow.experiment.Experiment method)
R
r (cytoflow.utility.logicle_scale.LogicleScale attribute)
RadvizHandler (class in cytoflowgui.view_plugins.radviz)
RadvizParamsHandler (class in cytoflowgui.view_plugins.radviz)
RadvizPlotParams (class in cytoflowgui.workflow.views.radviz)
RadvizPlugin (class in cytoflowgui.view_plugins.radviz)
RadvizView (class in cytoflow.views.radviz)
RadvizWorkflowView (class in cytoflowgui.workflow.views.radviz)
random_string() (in module cytoflow.utility.util_functions)
Range2DHandler (class in cytoflowgui.op_plugins.range2d)
Range2DOp (class in cytoflow.operations.range2d)
Range2DPlugin (class in cytoflowgui.op_plugins.range2d)
Range2DSelectionView (class in cytoflowgui.workflow.operations.range2d)
Range2DViewHandler (class in cytoflowgui.op_plugins.range2d)
Range2DWorkflowOp (class in cytoflowgui.workflow.operations.range2d)
RangeHandler (class in cytoflowgui.op_plugins.range)
RangeOp (class in cytoflow.operations.range)
RangePlugin (class in cytoflowgui.op_plugins.range)
RangeSelection (class in cytoflow.operations.range)
RangeSelectionView (class in cytoflowgui.workflow.operations.range)
RangeSlider (class in cytoflowgui.editors.range_slider)
RangeSubset (class in cytoflowgui.workflow.subset)
RangeSubsetHandler (class in cytoflowgui.subset_controllers)
RangeViewHandler (class in cytoflowgui.op_plugins.range)
RangeWorkflowOp (class in cytoflowgui.workflow.operations.range)
RatioHandler (class in cytoflowgui.op_plugins.ratio)
RatioOp (class in cytoflow.operations.ratio)
RatioPlugin (class in cytoflowgui.op_plugins.ratio)
RatioWorkflowOp (class in cytoflowgui.workflow.operations.ratio)
record() (cytoflowgui.utility.event_tracer.RecordContainer method)
record_events() (in module cytoflowgui.utility.event_tracer)
RecordContainer (class in cytoflowgui.utility.event_tracer)
recv_main() (cytoflowgui.workflow.workflow.LocalWorkflow method)
(cytoflowgui.workflow.workflow.RemoteWorkflow method)
recv_thread (cytoflowgui.workflow.workflow.LocalWorkflow attribute)
(cytoflowgui.workflow.workflow.RemoteWorkflow attribute)
register_deletable_listener() (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage method)
register_description_listener() (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage method)
register_icon_listener() (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage method)
register_name_listener() (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage method)
register_scale() (in module cytoflow.utility.scale)
remote_canvas_connection (cytoflowgui.cytoflow_application.CytoflowApplication attribute)
remote_eval() (cytoflowgui.workflow.workflow.LocalWorkflow method)
remote_exec() (cytoflowgui.workflow.workflow.LocalWorkflow method)
remote_main() (in module cytoflowgui.run)
remote_process (cytoflowgui.cytoflow_application.CytoflowApplication attribute)
remote_workflow_connection (cytoflowgui.cytoflow_application.CytoflowApplication attribute)
RemoteWorkflow (class in cytoflowgui.workflow.workflow)
remove_channel (cytoflowgui.op_plugins.bead_calibration.BeadCalibrationHandler attribute)
(cytoflowgui.op_plugins.pca.PCAHandler attribute)
(cytoflowgui.view_plugins.parallel_coords.ParallelCoordinatesHandler attribute)
(cytoflowgui.view_plugins.radviz.RadvizHandler attribute)
remove_control (cytoflowgui.op_plugins.bleedthrough_linear.BleedthroughLinearHandler attribute)
(cytoflowgui.op_plugins.color_translation.ColorTranslationHandler attribute)
REMOVE_ITEMS (cytoflowgui.workflow.workflow.Msg attribute)
remove_tubes (cytoflowgui.import_dialog.ExperimentDialogHandler attribute)
Removed (class in cytoflow.utility.custom_traits)
reset_channels() (cytoflowgui.workflow.operations.import_op.ImportWorkflowOp method)
reset_channels_event (cytoflowgui.op_plugins.import_op.ImportHandler attribute)
RESIZE_EVENT (cytoflowgui.matplotlib_backend_local.Msg attribute)
(cytoflowgui.matplotlib_backend_remote.Msg attribute)
resizeEvent() (cytoflowgui.matplotlib_backend_local.FigureCanvasQTAggLocal method)
RESULT (cytoflowgui.workflow.Changed attribute)
result (cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
row_facet (cytoflow.views.table.TableView attribute)
run() (cytoflowgui.cytoflow_application.CytoflowApplication method)
(cytoflowgui.workflow.workflow.RemoteWorkflow method)
RUN_ALL (cytoflowgui.workflow.workflow.Msg attribute)
run_all() (cytoflowgui.workflow.workflow.LocalWorkflow method)
run_gui() (in module cytoflowgui.run)
S
samples (cytoflowgui.op_plugins.import_op.ImportHandler attribute)
sanitize_identifier() (in module cytoflow.utility.util_functions)
sanitize_metadata() (in module cytoflowgui.import_dialog)
save_to_directory() (cytoflowgui.utility.event_tracer.MultiThreadRecordContainer method)
save_to_file() (cytoflowgui.utility.event_tracer.RecordContainer method)
save_yaml() (in module cytoflowgui.workflow.serialization)
scale (cytoflow.operations.base_op_views.Op1DView attribute)
(cytoflow.operations.binning.BinningOp attribute)
(cytoflow.operations.binning.BinningView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks1DView attribute)
(cytoflow.operations.flowpeaks.FlowPeaksOp attribute)
(cytoflow.operations.gaussian.GaussianMixture1DView attribute)
(cytoflow.operations.gaussian.GaussianMixtureOp attribute)
(cytoflow.operations.kmeans.KMeans1DView attribute)
(cytoflow.operations.kmeans.KMeansOp attribute)
(cytoflow.operations.pca.PCAOp attribute)
(cytoflow.operations.range.RangeSelection attribute)
(cytoflow.operations.threshold.ThresholdSelection attribute)
(cytoflow.views.bar_chart.BarChartView attribute)
(cytoflow.views.base_views.Base1DStatisticsView attribute)
(cytoflow.views.base_views.Base1DView attribute)
(cytoflow.views.base_views.BaseNDView attribute)
(cytoflow.views.histogram.HistogramView attribute)
(cytoflow.views.kde_1d.Kde1DView attribute)
(cytoflow.views.parallel_coords.ParallelCoordinatesView attribute)
(cytoflow.views.radviz.RadvizView attribute)
(cytoflow.views.stats_1d.Stats1DView attribute)
(cytoflow.views.violin.ViolinPlotView attribute)
scale_factory() (in module cytoflow.utility.scale)
ScaleEnum (class in cytoflow.utility.custom_traits)
ScaleMixin (class in cytoflow.utility.scale)
ScatterplotHandler (class in cytoflowgui.view_plugins.scatterplot)
ScatterplotParamsHandler (class in cytoflowgui.view_plugins.scatterplot)
ScatterplotPlotParams (class in cytoflowgui.workflow.views.scatterplot)
ScatterplotPlugin (class in cytoflowgui.view_plugins.scatterplot)
ScatterplotPolygonSelectionView (class in cytoflow.operations.polygon)
ScatterplotQuadSelectionView (class in cytoflow.operations.quad)
ScatterplotRangeSelection2DView (class in cytoflow.operations.range2d)
ScatterplotView (class in cytoflow.views.scatterplot)
ScatterplotWorkflowView (class in cytoflowgui.workflow.views.scatterplot)
SELECT (cytoflowgui.workflow.workflow.Msg attribute)
selected (cytoflowgui.editors.vertical_notebook_editor.VerticalNotebookEditor attribute)
(cytoflowgui.workflow.workflow.LocalWorkflow attribute)
(cytoflowgui.workflow.workflow.RemoteWorkflow attribute)
selected_tubes (cytoflowgui.import_dialog.ExperimentDialogHandler attribute)
selected_view_params_view() (cytoflowgui.workflow_controller.WorkflowController method)
selected_view_plot_name_view() (cytoflowgui.workflow_controller.WorkflowController method)
selected_view_traits_view() (cytoflowgui.workflow_controller.WorkflowController method)
send_main() (cytoflowgui.workflow.workflow.LocalWorkflow method)
(cytoflowgui.workflow.workflow.RemoteWorkflow method)
send_thread (cytoflowgui.workflow.workflow.LocalWorkflow attribute)
(cytoflowgui.workflow.workflow.RemoteWorkflow attribute)
send_to_local() (cytoflowgui.matplotlib_backend_remote.FigureCanvasAggRemote method)
send_to_remote() (cytoflowgui.matplotlib_backend_local.FigureCanvasQTAggLocal method)
SentinelRecord (class in cytoflowgui.utility.event_tracer)
set() (cytoflow.utility.custom_traits.Deprecated method)
(cytoflow.utility.custom_traits.Removed method)
set_default_locators_and_formatters() (cytoflow.utility.hlog_scale.MatplotlibHlogScale method)
(cytoflow.utility.logicle_scale.MatplotlibLogicleScale method)
set_default_scale() (in module cytoflow.utility.scale)
set_params() (cytoflow.utility.hlog_scale.HlogMajorLocator method)
(cytoflow.utility.hlog_scale.HlogMinorLocator method)
(cytoflow.utility.logicle_scale.LogicleMajorLocator method)
(cytoflow.utility.logicle_scale.LogicleMinorLocator method)
set_working() (cytoflowgui.matplotlib_backend_remote.FigureCanvasAggRemote method)
setFixedHeight() (cytoflowgui.util.HintedMainWindow method)
(cytoflowgui.util.HintedWidget method)
setFixedWidth() (cytoflowgui.util.HintedMainWindow method)
(cytoflowgui.util.HintedWidget method)
setHigh() (cytoflowgui.editors.range_slider.RangeSlider method)
setLow() (cytoflowgui.editors.range_slider.RangeSlider method)
setup_event (cytoflowgui.op_plugins.import_op.ImportHandler attribute)
short_name (cytoflowgui.op_plugins.autofluorescence.AutofluorescencePlugin attribute)
(cytoflowgui.op_plugins.bead_calibration.BeadCalibrationPlugin attribute)
(cytoflowgui.op_plugins.binning.BinningPlugin attribute)
(cytoflowgui.op_plugins.bleedthrough_linear.BleedthroughLinearPlugin attribute)
(cytoflowgui.op_plugins.channel_stat.ChannelStatisticPlugin attribute)
(cytoflowgui.op_plugins.color_translation.ColorTranslationPlugin attribute)
(cytoflowgui.op_plugins.density.DensityGatePlugin attribute)
(cytoflowgui.op_plugins.flowpeaks.FlowPeaksPlugin attribute)
(cytoflowgui.op_plugins.gaussian_1d.GaussianMixture1DPlugin attribute)
(cytoflowgui.op_plugins.gaussian_2d.GaussianMixture2DPlugin attribute)
(cytoflowgui.op_plugins.i_op_plugin.IOperationPlugin attribute)
(cytoflowgui.op_plugins.import_op.ImportPlugin attribute)
(cytoflowgui.op_plugins.kmeans.KMeansPlugin attribute)
(cytoflowgui.op_plugins.pca.PCAPlugin attribute)
(cytoflowgui.op_plugins.polygon.PolygonPlugin attribute)
(cytoflowgui.op_plugins.quad.QuadPlugin attribute)
(cytoflowgui.op_plugins.range.RangePlugin attribute)
(cytoflowgui.op_plugins.range2d.Range2DPlugin attribute)
(cytoflowgui.op_plugins.ratio.RatioPlugin attribute)
(cytoflowgui.op_plugins.tasbe.TasbePlugin attribute)
(cytoflowgui.op_plugins.threshold.ThresholdPlugin attribute)
(cytoflowgui.op_plugins.xform_stat.TransformStatisticPlugin attribute)
(cytoflowgui.view_plugins.bar_chart.BarChartPlugin attribute)
(cytoflowgui.view_plugins.density.DensityPlugin attribute)
(cytoflowgui.view_plugins.export_fcs.ExportFCSPlugin attribute)
(cytoflowgui.view_plugins.histogram.HistogramPlugin attribute)
(cytoflowgui.view_plugins.histogram_2d.Histogram2DPlugin attribute)
(cytoflowgui.view_plugins.i_view_plugin.IViewPlugin attribute)
(cytoflowgui.view_plugins.kde_1d.Kde1DPlugin attribute)
(cytoflowgui.view_plugins.kde_2d.Kde2DPlugin attribute)
(cytoflowgui.view_plugins.parallel_coords.ParallelCoordinatesPlugin attribute)
(cytoflowgui.view_plugins.radviz.RadvizPlugin attribute)
(cytoflowgui.view_plugins.scatterplot.ScatterplotPlugin attribute)
(cytoflowgui.view_plugins.stats_1d.Stats1DPlugin attribute)
(cytoflowgui.view_plugins.stats_2d.Stats2DPlugin attribute)
(cytoflowgui.view_plugins.table.TablePlugin attribute)
(cytoflowgui.view_plugins.violin.ViolinPlotPlugin attribute)
should_apply() (cytoflowgui.workflow.operations.autofluorescence.AutofluorescenceWorkflowOp method)
(cytoflowgui.workflow.operations.operation_base.IWorkflowOperation method)
(cytoflowgui.workflow.operations.operation_base.WorkflowOperation method)
should_clear_estimate() (cytoflowgui.workflow.operations.autofluorescence.AutofluorescenceWorkflowOp method)
(cytoflowgui.workflow.operations.bead_calibration.BeadCalibrationWorkflowOp method)
(cytoflowgui.workflow.operations.bleedthrough_linear.BleedthroughLinearWorkflowOp method)
(cytoflowgui.workflow.operations.color_translation.ColorTranslationWorkflowOp method)
(cytoflowgui.workflow.operations.operation_base.IWorkflowOperation method)
(cytoflowgui.workflow.operations.operation_base.WorkflowOperation method)
(cytoflowgui.workflow.operations.tasbe.TasbeWorkflowOp method)
should_plot() (cytoflowgui.workflow.operations.autofluorescence.AutofluorescenceWorkflowView method)
(cytoflowgui.workflow.operations.bead_calibration.BeadCalibrationWorkflowView method)
(cytoflowgui.workflow.operations.bleedthrough_linear.BleedthroughLinearWorkflowView method)
(cytoflowgui.workflow.operations.color_translation.ColorTranslationWorkflowView method)
(cytoflowgui.workflow.operations.density.DensityGateWorkflowView method)
(cytoflowgui.workflow.operations.tasbe.TasbeWorkflowView method)
(cytoflowgui.workflow.views.view_base.IWorkflowView method)
(cytoflowgui.workflow.views.view_base.WorkflowView method)
show() (in module cytoflowgui.matplotlib_backend_remote)
show_error() (cytoflowgui.cytoflow_application.CytoflowApplication method)
SHUTDOWN (cytoflowgui.workflow.workflow.Msg attribute)
shutdown() (cytoflowgui.workflow.workflow.RemoteWorkflow method)
shutdown_remote_process() (cytoflowgui.workflow.workflow.LocalWorkflow method)
sigma (cytoflow.operations.density.DensityGateOp attribute)
(cytoflow.operations.gaussian.GaussianMixtureOp attribute)
sizeHint() (cytoflowgui.util.HintedMainWindow method)
(cytoflowgui.util.HintedWidget method)
sliderOrderForMove() (cytoflowgui.editors.range_slider.RangeSlider method)
sliderOrderForPaint() (cytoflowgui.editors.range_slider.RangeSlider method)
source (cytoflowgui.utility.event_tracer.CallingMessageRecord attribute)
spillover (cytoflow.operations.bleedthrough_linear.BleedthroughLinearOp attribute)
start_remote_process() (in module cytoflowgui.run)
statistic (cytoflow.operations.xform_stat.TransformStatisticOp attribute)
(cytoflow.utility.logicle_scale.LogicleScale attribute)
(cytoflow.utility.scale.IScale attribute)
(cytoflow.views.bar_chart.BarChartView attribute)
(cytoflow.views.base_views.Base1DStatisticsView attribute)
(cytoflow.views.stats_1d.Stats1DView attribute)
(cytoflow.views.table.TableView attribute)
(cytoflowgui.experiment_pane_model.StatisticNode attribute)
statistic_name (cytoflow.operations.channel_stat.ChannelStatisticOp attribute)
(cytoflow.operations.frame_stat.FrameStatisticOp attribute)
(cytoflow.operations.xform_stat.TransformStatisticOp attribute)
StatisticNode (class in cytoflowgui.experiment_pane_model)
statistics (cytoflow.experiment.Experiment attribute)
(cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
statistics_names (cytoflowgui.workflow_controller.WorkflowItemHandler attribute)
StatisticsNode (class in cytoflowgui.experiment_pane_model)
Stats1DHandler (class in cytoflowgui.view_plugins.stats_1d)
Stats1DParamsHandler (class in cytoflowgui.view_plugins.stats_1d)
Stats1DPlotParams (class in cytoflowgui.workflow.views.stats_1d)
(class in cytoflowgui.workflow.views.view_base)
Stats1DPlugin (class in cytoflowgui.view_plugins.stats_1d)
Stats1DView (class in cytoflow.views.stats_1d)
Stats1DWorkflowView (class in cytoflowgui.workflow.views.stats_1d)
Stats2DHandler (class in cytoflowgui.view_plugins.stats_2d)
Stats2DParamsHandler (class in cytoflowgui.view_plugins.stats_2d)
Stats2DPlotParams (class in cytoflowgui.workflow.views.stats_2d)
(class in cytoflowgui.workflow.views.view_base)
Stats2DPlugin (class in cytoflowgui.view_plugins.stats_2d)
Stats2DView (class in cytoflow.views.stats_2d)
Stats2DWorkflowView (class in cytoflowgui.workflow.views.stats_2d)
status (cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
stop() (cytoflowgui.cytoflow_application.CytoflowApplication method)
StringNode (class in cytoflowgui.experiment_pane_model)
subcolumn_facet (cytoflow.views.table.TableView attribute)
subrow_facet (cytoflow.views.table.TableView attribute)
subset (cytoflow.operations.binning.BinningView attribute)
(cytoflow.operations.bleedthrough_linear.BleedthroughLinearDiagnostic attribute)
(cytoflow.operations.channel_stat.ChannelStatisticOp attribute)
(cytoflow.operations.color_translation.ColorTranslationDiagnostic attribute)
(cytoflow.operations.density.DensityGateView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks1DView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks2DDensityView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks2DView attribute)
(cytoflow.operations.frame_stat.FrameStatisticOp attribute)
(cytoflow.operations.gaussian.GaussianMixture1DView attribute)
(cytoflow.operations.gaussian.GaussianMixture2DView attribute)
(cytoflow.operations.kmeans.KMeans1DView attribute)
(cytoflow.operations.kmeans.KMeans2DView attribute)
(cytoflow.operations.polygon.DensityPolygonSelectionView attribute)
(cytoflow.operations.polygon.ScatterplotPolygonSelectionView attribute)
(cytoflow.operations.quad.DensityQuadSelectionView attribute)
(cytoflow.operations.quad.ScatterplotQuadSelectionView attribute)
(cytoflow.operations.range.RangeSelection attribute)
(cytoflow.operations.range2d.DensityRangeSelection2DView attribute)
(cytoflow.operations.range2d.ScatterplotRangeSelection2DView attribute)
(cytoflow.operations.threshold.ThresholdSelection attribute)
(cytoflow.views.bar_chart.BarChartView attribute)
(cytoflow.views.base_views.BaseDataView attribute)
(cytoflow.views.base_views.BaseStatisticsView attribute)
(cytoflow.views.densityplot.DensityView attribute)
(cytoflow.views.export_fcs.ExportFCS attribute)
(cytoflow.views.histogram.HistogramView attribute)
(cytoflow.views.histogram_2d.Histogram2DView attribute)
(cytoflow.views.kde_1d.Kde1DView attribute)
(cytoflow.views.kde_2d.Kde2DView attribute)
(cytoflow.views.parallel_coords.ParallelCoordinatesView attribute)
(cytoflow.views.radviz.RadvizView attribute)
(cytoflow.views.scatterplot.ScatterplotView attribute)
(cytoflow.views.stats_1d.Stats1DView attribute)
(cytoflow.views.stats_2d.Stats2DView attribute)
(cytoflow.views.table.TableView attribute)
(cytoflow.views.violin.ViolinPlotView attribute)
subset() (cytoflow.experiment.Experiment method)
subset_handler_factory() (in module cytoflowgui.subset_controllers)
subset_view() (cytoflowgui.subset_controllers.BoolSubsetHandler method)
(cytoflowgui.subset_controllers.CategorySubsetHandler method)
(cytoflowgui.subset_controllers.RangeSubsetHandler method)
SubsetListEditor (class in cytoflowgui.editors.subset_list_editor)
T
table_editor (cytoflowgui.import_dialog.ExperimentDialogHandler attribute)
TableHandler (class in cytoflowgui.view_plugins.table)
TablePlugin (class in cytoflowgui.view_plugins.table)
TableView (class in cytoflow.views.table)
TableWorkflowView (class in cytoflowgui.workflow.views.table)
TabListEditor (class in cytoflowgui.editors.tab_list_editor)
TasbeHandler (class in cytoflowgui.op_plugins.tasbe)
TasbePlugin (class in cytoflowgui.op_plugins.tasbe)
TasbeViewHandler (class in cytoflowgui.op_plugins.tasbe)
TasbeWorkflowOp (class in cytoflowgui.workflow.operations.tasbe)
TasbeWorkflowView (class in cytoflowgui.workflow.operations.tasbe)
task (cytoflowgui.export_task.ExportPane attribute)
(cytoflowgui.view_pane.ViewDockPane attribute)
TASKS (cytoflowgui.export_task.ExportFigurePlugin attribute)
threshold (cytoflow.operations.threshold.ThresholdOp attribute)
ThresholdHandler (class in cytoflowgui.op_plugins.threshold)
ThresholdOp (class in cytoflow.operations.threshold)
ThresholdPlugin (class in cytoflowgui.op_plugins.threshold)
ThresholdSelection (class in cytoflow.operations.threshold)
ThresholdSelectionView (class in cytoflowgui.workflow.operations.threshold)
ThresholdViewHandler (class in cytoflowgui.op_plugins.threshold)
ThresholdWorkflowOp (class in cytoflowgui.workflow.operations.threshold)
tick_values() (cytoflow.utility.hlog_scale.HlogMajorLocator method)
(cytoflow.utility.hlog_scale.HlogMinorLocator method)
(cytoflow.utility.logicle_scale.LogicleMajorLocator method)
(cytoflow.utility.logicle_scale.LogicleMinorLocator method)
tight_layout() (in module cytoflowgui.matplotlib_backend_remote)
time (cytoflowgui.utility.event_tracer.CallingMessageRecord attribute)
(cytoflowgui.utility.event_tracer.ChangeMessageRecord attribute)
(cytoflowgui.utility.event_tracer.ExitMessageRecord attribute)
tno_allows_children() (cytoflowgui.experiment_pane_model.ChannelNode method)
(cytoflowgui.experiment_pane_model.ChannelsNode method)
(cytoflowgui.experiment_pane_model.ConditionNode method)
(cytoflowgui.experiment_pane_model.ConditionsNode method)
(cytoflowgui.experiment_pane_model.StatisticNode method)
(cytoflowgui.experiment_pane_model.StatisticsNode method)
(cytoflowgui.experiment_pane_model.StringNode method)
(cytoflowgui.experiment_pane_model.WorkflowItemNode method)
tno_get_children() (cytoflowgui.experiment_pane_model.ChannelNode method)
(cytoflowgui.experiment_pane_model.ChannelsNode method)
(cytoflowgui.experiment_pane_model.ConditionNode method)
(cytoflowgui.experiment_pane_model.ConditionsNode method)
(cytoflowgui.experiment_pane_model.StatisticNode method)
(cytoflowgui.experiment_pane_model.StatisticsNode method)
(cytoflowgui.experiment_pane_model.WorkflowItemNode method)
tno_get_icon() (cytoflowgui.experiment_pane_model.ChannelNode method)
(cytoflowgui.experiment_pane_model.ChannelsNode method)
(cytoflowgui.experiment_pane_model.ConditionNode method)
(cytoflowgui.experiment_pane_model.ConditionsNode method)
(cytoflowgui.experiment_pane_model.StatisticNode method)
(cytoflowgui.experiment_pane_model.StatisticsNode method)
(cytoflowgui.experiment_pane_model.StringNode method)
tno_get_label() (cytoflowgui.experiment_pane_model.ChannelNode method)
(cytoflowgui.experiment_pane_model.ChannelsNode method)
(cytoflowgui.experiment_pane_model.ConditionNode method)
(cytoflowgui.experiment_pane_model.ConditionsNode method)
(cytoflowgui.experiment_pane_model.StatisticNode method)
(cytoflowgui.experiment_pane_model.StatisticsNode method)
(cytoflowgui.experiment_pane_model.StringNode method)
(cytoflowgui.experiment_pane_model.WorkflowItemNode method)
tno_get_menu() (cytoflowgui.experiment_pane_model.ChannelNode method)
(cytoflowgui.experiment_pane_model.ChannelsNode method)
(cytoflowgui.experiment_pane_model.ConditionNode method)
(cytoflowgui.experiment_pane_model.ConditionsNode method)
(cytoflowgui.experiment_pane_model.StatisticNode method)
(cytoflowgui.experiment_pane_model.StatisticsNode method)
(cytoflowgui.experiment_pane_model.StringNode method)
(cytoflowgui.experiment_pane_model.WorkflowItemNode method)
tno_has_children() (cytoflowgui.experiment_pane_model.ChannelNode method)
(cytoflowgui.experiment_pane_model.ChannelsNode method)
(cytoflowgui.experiment_pane_model.ConditionNode method)
(cytoflowgui.experiment_pane_model.ConditionsNode method)
(cytoflowgui.experiment_pane_model.StatisticNode method)
(cytoflowgui.experiment_pane_model.StatisticsNode method)
(cytoflowgui.experiment_pane_model.StringNode method)
(cytoflowgui.experiment_pane_model.WorkflowItemNode method)
ToggleButtonEditor (class in cytoflowgui.editors.toggle_button)
tol (cytoflow.operations.flowpeaks.FlowPeaksOp attribute)
trait_view() (cytoflowgui.workflow.workflow_item.WorkflowItem method)
traits_eq() (in module cytoflowgui.workflow.serialization)
traits_hash() (in module cytoflowgui.workflow.serialization)
traits_repr() (in module cytoflowgui.workflow.serialization)
traits_str() (in module cytoflowgui.workflow.serialization)
transform_non_affine() (cytoflow.utility.hlog_scale.MatplotlibHlogScale.HlogTransform method)
(cytoflow.utility.hlog_scale.MatplotlibHlogScale.InvertedLogicleTransform method)
(cytoflow.utility.logicle_scale.MatplotlibLogicleScale.InvertedLogicleTransform method)
(cytoflow.utility.logicle_scale.MatplotlibLogicleScale.LogicleTransform method)
TransformStatisticHandler (class in cytoflowgui.op_plugins.xform_stat)
TransformStatisticOp (class in cytoflow.operations.xform_stat)
TransformStatisticPlugin (class in cytoflowgui.op_plugins.xform_stat)
TransformStatisticWorkflowOp (class in cytoflowgui.workflow.operations.xform_stat)
TranslationControl (class in cytoflowgui.workflow.operations.tasbe)
TranslationControlHandler (class in cytoflowgui.op_plugins.tasbe)
tree_node (cytoflowgui.workflow_controller.WorkflowItemHandler attribute)
Tube (class in cytoflow.operations.import_op)
(class in cytoflowgui.import_dialog)
tube_traits (cytoflowgui.import_dialog.ExperimentDialogModel attribute)
tube_traits_dict (cytoflowgui.import_dialog.ExperimentDialogModel attribute)
tubes (cytoflow.operations.import_op.ImportOp attribute)
(cytoflowgui.import_dialog.ExperimentDialogModel attribute)
TubeTrait (class in cytoflowgui.import_dialog)
type (cytoflowgui.import_dialog.TubeTrait attribute)
U
ui (cytoflowgui.editors.vertical_notebook.VerticalNotebookPage attribute)
UniquePriorityQueue (class in cytoflowgui.workflow.workflow)
Unit (class in cytoflowgui.workflow.operations.bead_calibration)
UnitHandler (class in cytoflowgui.op_plugins.bead_calibration)
(class in cytoflowgui.op_plugins.tasbe)
units (cytoflow.operations.bead_calibration.BeadCalibrationOp attribute)
update_import_op() (cytoflowgui.import_dialog.ExperimentDialogModel method)
UPDATE_OP (cytoflowgui.workflow.workflow.Msg attribute)
UPDATE_VIEW (cytoflowgui.workflow.workflow.Msg attribute)
UPDATE_WI (cytoflowgui.workflow.workflow.Msg attribute)
updating (cytoflowgui.import_dialog.ExperimentDialogHandler attribute)
V
valid (cytoflowgui.import_dialog.ExperimentDialogModel attribute)
VALID (cytoflowgui.workflow.operations.tasbe.Progress attribute)
validate() (cytoflow.utility.custom_traits.CFloatOrNone method)
(cytoflow.utility.custom_traits.CIntOrNone method)
(cytoflow.utility.custom_traits.FloatOrNone method)
(cytoflow.utility.custom_traits.IntOrNone method)
(cytoflow.utility.custom_traits.PositiveCFloat method)
(cytoflow.utility.custom_traits.PositiveCInt method)
(cytoflow.utility.custom_traits.PositiveFloat method)
(cytoflow.utility.custom_traits.PositiveInt method)
(cytoflowgui.import_dialog.ConvertingBool method)
(cytoflowgui.workflow.operations.import_op.ValidPythonIdentifier method)
ValidPythonIdentifier (class in cytoflowgui.workflow.operations.import_op)
value (cytoflowgui.editors.toggle_button.ToggleButtonEditor attribute)
(cytoflowgui.experiment_pane_model.StringNode attribute)
ValuesBoundsEditor (class in cytoflowgui.editors.value_bounds_editor)
variable (cytoflow.views.bar_chart.BarChartView attribute)
(cytoflow.views.base_views.BaseStatisticsView attribute)
(cytoflow.views.stats_1d.Stats1DView attribute)
(cytoflow.views.stats_2d.Stats2DView attribute)
(cytoflow.views.violin.ViolinPlotView attribute)
variable_scale (cytoflow.views.stats_1d.Stats1DView attribute)
VerticalListEditor (class in cytoflowgui.editors.vertical_list_editor)
VerticalNotebook (class in cytoflowgui.editors.vertical_notebook)
VerticalNotebookEditor (class in cytoflowgui.editors.vertical_notebook_editor)
VerticalNotebookPage (class in cytoflowgui.editors.vertical_notebook)
vertices (cytoflow.operations.polygon.PolygonOp attribute)
view (cytoflowgui.editors.vertical_notebook_editor.VerticalNotebookEditor attribute)
(cytoflowgui.preferences.CytoflowPreferencesPane attribute)
VIEW (cytoflowgui.workflow.Changed attribute)
view_error (cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
view_error_trait (cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
view_id (cytoflowgui.op_plugins.autofluorescence.AutofluorescencePlugin attribute)
(cytoflowgui.op_plugins.bead_calibration.BeadCalibrationPlugin attribute)
(cytoflowgui.op_plugins.binning.BinningPlugin attribute)
(cytoflowgui.op_plugins.bleedthrough_linear.BleedthroughLinearPlugin attribute)
(cytoflowgui.op_plugins.channel_stat.ChannelStatisticPlugin attribute)
(cytoflowgui.op_plugins.color_translation.ColorTranslationPlugin attribute)
(cytoflowgui.op_plugins.density.DensityGatePlugin attribute)
(cytoflowgui.op_plugins.flowpeaks.FlowPeaksPlugin attribute)
(cytoflowgui.op_plugins.gaussian_1d.GaussianMixture1DPlugin attribute)
(cytoflowgui.op_plugins.gaussian_2d.GaussianMixture2DPlugin attribute)
(cytoflowgui.op_plugins.import_op.ImportPlugin attribute)
(cytoflowgui.op_plugins.kmeans.KMeansPlugin attribute)
(cytoflowgui.op_plugins.pca.PCAPlugin attribute)
(cytoflowgui.op_plugins.polygon.PolygonPlugin attribute)
(cytoflowgui.op_plugins.quad.QuadPlugin attribute)
(cytoflowgui.op_plugins.range.RangePlugin attribute)
(cytoflowgui.op_plugins.range2d.Range2DPlugin attribute)
(cytoflowgui.op_plugins.ratio.RatioPlugin attribute)
(cytoflowgui.op_plugins.tasbe.TasbePlugin attribute)
(cytoflowgui.op_plugins.threshold.ThresholdPlugin attribute)
(cytoflowgui.op_plugins.xform_stat.TransformStatisticPlugin attribute)
(cytoflowgui.view_plugins.bar_chart.BarChartPlugin attribute)
(cytoflowgui.view_plugins.density.DensityPlugin attribute)
(cytoflowgui.view_plugins.export_fcs.ExportFCSPlugin attribute)
(cytoflowgui.view_plugins.histogram.HistogramPlugin attribute)
(cytoflowgui.view_plugins.histogram_2d.Histogram2DPlugin attribute)
(cytoflowgui.view_plugins.i_view_plugin.IViewPlugin attribute)
(cytoflowgui.view_plugins.kde_1d.Kde1DPlugin attribute)
(cytoflowgui.view_plugins.kde_2d.Kde2DPlugin attribute)
(cytoflowgui.view_plugins.parallel_coords.ParallelCoordinatesPlugin attribute)
(cytoflowgui.view_plugins.radviz.RadvizPlugin attribute)
(cytoflowgui.view_plugins.scatterplot.ScatterplotPlugin attribute)
(cytoflowgui.view_plugins.stats_1d.Stats1DPlugin attribute)
(cytoflowgui.view_plugins.stats_2d.Stats2DPlugin attribute)
(cytoflowgui.view_plugins.table.TablePlugin attribute)
(cytoflowgui.view_plugins.violin.ViolinPlotPlugin attribute)
view_limits() (cytoflow.utility.hlog_scale.HlogMajorLocator method)
(cytoflow.utility.logicle_scale.LogicleMajorLocator method)
(cytoflow.utility.logicle_scale.LogicleMinorLocator method)
view_params_view() (cytoflowgui.workflow_controller.WorkflowItemHandler method)
view_plot_name_view() (cytoflowgui.workflow_controller.WorkflowItemHandler method)
view_plugins (cytoflowgui.view_pane.ViewDockPane attribute)
(cytoflowgui.workflow_controller.WorkflowController attribute)
(cytoflowgui.workflow_controller.WorkflowItemHandler attribute)
view_traits_view() (cytoflowgui.workflow_controller.WorkflowItemHandler method)
view_warning (cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
view_warning_trait (cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
ViewDockPane (class in cytoflowgui.view_pane)
ViewHandler (class in cytoflowgui.view_plugins.view_plugin_base)
ViewPluginManager (class in cytoflowgui.view_plugins.i_view_plugin)
views (cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
ViolinHandler (class in cytoflowgui.view_plugins.violin)
ViolinParamsHandler (class in cytoflowgui.view_plugins.violin)
ViolinPlotParams (class in cytoflowgui.workflow.views.violin)
ViolinPlotPlugin (class in cytoflowgui.view_plugins.violin)
ViolinPlotView (class in cytoflow.views.violin)
ViolinPlotWorkflowView (class in cytoflowgui.workflow.views.violin)
visible (cytoflowgui.experiment_pane.ExperimentBrowserDockPane attribute)
(cytoflowgui.export_task.ExportPane attribute)
(cytoflowgui.view_pane.PlotParamsPane attribute)
W
W (cytoflow.utility.logicle_scale.LogicleScale attribute)
when (cytoflowgui.editors.subset_list_editor.SubsetListEditor attribute)
whiten (cytoflow.operations.pca.PCAOp attribute)
wi (cytoflowgui.experiment_pane_model.ChannelNode attribute)
(cytoflowgui.experiment_pane_model.ChannelsNode attribute)
(cytoflowgui.experiment_pane_model.ConditionNode attribute)
(cytoflowgui.experiment_pane_model.ConditionsNode attribute)
(cytoflowgui.experiment_pane_model.StatisticNode attribute)
(cytoflowgui.experiment_pane_model.StatisticsNode attribute)
(cytoflowgui.experiment_pane_model.WorkflowItemNode attribute)
wi_sync() (cytoflowgui.workflow.workflow.LocalWorkflow method)
wi_waitfor() (cytoflowgui.workflow.workflow.LocalWorkflow method)
width (cytoflowgui.export_task.ExportTask attribute)
workflow (cytoflowgui.workflow.workflow.LocalWorkflow attribute)
(cytoflowgui.workflow.workflow.RemoteWorkflow attribute)
(cytoflowgui.workflow.workflow_item.WorkflowItem attribute)
workflow_handlers (cytoflowgui.workflow_controller.WorkflowController attribute)
workflow_traits_view() (cytoflowgui.workflow_controller.WorkflowController method)
WorkflowByView (class in cytoflowgui.workflow.views.view_base)
WorkflowController (class in cytoflowgui.workflow_controller)
WorkflowDockPane (class in cytoflowgui.workflow_pane)
WorkflowFacetView (class in cytoflowgui.workflow.views.view_base)
WorkflowItem (class in cytoflowgui.workflow.workflow_item)
WorkflowItemHandler (class in cytoflowgui.workflow_controller)
WorkflowItemNode (class in cytoflowgui.experiment_pane_model)
WorkflowOperation (class in cytoflowgui.workflow.operations.operation_base)
WorkflowView (class in cytoflowgui.workflow.views.view_base)
WORKING (cytoflowgui.matplotlib_backend_local.Msg attribute)
(cytoflowgui.matplotlib_backend_remote.Msg attribute)
write_fcs() (in module cytoflow.utility.fcswrite)
X
x_error_statistic (cytoflow.views.base_views.Base2DStatisticsView attribute)
(cytoflow.views.stats_2d.Stats2DView attribute)
xchannel (cytoflow.operations.base_op_views.Op2DView attribute)
(cytoflow.operations.density.DensityGateOp attribute)
(cytoflow.operations.density.DensityGateView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks2DDensityView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks2DView attribute)
(cytoflow.operations.gaussian.GaussianMixture2DView attribute)
(cytoflow.operations.kmeans.KMeans2DView attribute)
(cytoflow.operations.polygon.DensityPolygonSelectionView attribute)
(cytoflow.operations.polygon.ScatterplotPolygonSelectionView attribute)
(cytoflow.operations.quad.DensityQuadSelectionView attribute)
(cytoflow.operations.quad.QuadOp attribute)
(cytoflow.operations.quad.ScatterplotQuadSelectionView attribute)
(cytoflow.operations.range2d.DensityRangeSelection2DView attribute)
(cytoflow.operations.range2d.Range2DOp attribute)
(cytoflow.operations.range2d.ScatterplotRangeSelection2DView attribute)
(cytoflow.views.base_views.Base2DView attribute)
(cytoflow.views.densityplot.DensityView attribute)
(cytoflow.views.histogram_2d.Histogram2DView attribute)
(cytoflow.views.kde_2d.Kde2DView attribute)
(cytoflow.views.scatterplot.ScatterplotView attribute)
xfacet (cytoflow.operations.binning.BinningView attribute)
(cytoflow.operations.density.DensityGateView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks1DView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks2DDensityView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks2DView attribute)
(cytoflow.operations.gaussian.GaussianMixture1DView attribute)
(cytoflow.operations.gaussian.GaussianMixture2DView attribute)
(cytoflow.operations.kmeans.KMeans1DView attribute)
(cytoflow.operations.kmeans.KMeans2DView attribute)
(cytoflow.operations.polygon.DensityPolygonSelectionView attribute)
(cytoflow.operations.polygon.ScatterplotPolygonSelectionView attribute)
(cytoflow.operations.quad.DensityQuadSelectionView attribute)
(cytoflow.operations.quad.ScatterplotQuadSelectionView attribute)
(cytoflow.operations.range.RangeSelection attribute)
(cytoflow.operations.range2d.DensityRangeSelection2DView attribute)
(cytoflow.operations.range2d.ScatterplotRangeSelection2DView attribute)
(cytoflow.operations.threshold.ThresholdSelection attribute)
(cytoflow.views.bar_chart.BarChartView attribute)
(cytoflow.views.base_views.BaseView attribute)
(cytoflow.views.densityplot.DensityView attribute)
(cytoflow.views.histogram.HistogramView attribute)
(cytoflow.views.histogram_2d.Histogram2DView attribute)
(cytoflow.views.kde_1d.Kde1DView attribute)
(cytoflow.views.kde_2d.Kde2DView attribute)
(cytoflow.views.parallel_coords.ParallelCoordinatesView attribute)
(cytoflow.views.radviz.RadvizView attribute)
(cytoflow.views.scatterplot.ScatterplotView attribute)
(cytoflow.views.stats_1d.Stats1DView attribute)
(cytoflow.views.stats_2d.Stats2DView attribute)
(cytoflow.views.violin.ViolinPlotView attribute)
xhigh (cytoflow.operations.range2d.Range2DOp attribute)
xlow (cytoflow.operations.range2d.Range2DOp attribute)
xscale (cytoflow.operations.base_op_views.Op2DView attribute)
(cytoflow.operations.density.DensityGateOp attribute)
(cytoflow.operations.density.DensityGateView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks2DDensityView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks2DView attribute)
(cytoflow.operations.gaussian.GaussianMixture2DView attribute)
(cytoflow.operations.kmeans.KMeans2DView attribute)
(cytoflow.operations.polygon.DensityPolygonSelectionView attribute)
(cytoflow.operations.polygon.ScatterplotPolygonSelectionView attribute)
(cytoflow.operations.quad.DensityQuadSelectionView attribute)
(cytoflow.operations.quad.ScatterplotQuadSelectionView attribute)
(cytoflow.operations.range2d.DensityRangeSelection2DView attribute)
(cytoflow.operations.range2d.ScatterplotRangeSelection2DView attribute)
(cytoflow.views.base_views.Base2DStatisticsView attribute)
(cytoflow.views.base_views.Base2DView attribute)
(cytoflow.views.densityplot.DensityView attribute)
(cytoflow.views.histogram_2d.Histogram2DView attribute)
(cytoflow.views.kde_2d.Kde2DView attribute)
(cytoflow.views.scatterplot.ScatterplotView attribute)
(cytoflow.views.stats_2d.Stats2DView attribute)
xstatistic (cytoflow.views.base_views.Base2DStatisticsView attribute)
(cytoflow.views.stats_2d.Stats2DView attribute)
xthreshold (cytoflow.operations.quad.QuadOp attribute)
Y
y_error_statistic (cytoflow.views.base_views.Base2DStatisticsView attribute)
(cytoflow.views.stats_2d.Stats2DView attribute)
ychannel (cytoflow.operations.base_op_views.Op2DView attribute)
(cytoflow.operations.density.DensityGateOp attribute)
(cytoflow.operations.density.DensityGateView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks2DDensityView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks2DView attribute)
(cytoflow.operations.gaussian.GaussianMixture2DView attribute)
(cytoflow.operations.kmeans.KMeans2DView attribute)
(cytoflow.operations.polygon.DensityPolygonSelectionView attribute)
(cytoflow.operations.polygon.ScatterplotPolygonSelectionView attribute)
(cytoflow.operations.quad.DensityQuadSelectionView attribute)
(cytoflow.operations.quad.QuadOp attribute)
(cytoflow.operations.quad.ScatterplotQuadSelectionView attribute)
(cytoflow.operations.range2d.DensityRangeSelection2DView attribute)
(cytoflow.operations.range2d.Range2DOp attribute)
(cytoflow.operations.range2d.ScatterplotRangeSelection2DView attribute)
(cytoflow.views.base_views.Base2DView attribute)
(cytoflow.views.densityplot.DensityView attribute)
(cytoflow.views.histogram_2d.Histogram2DView attribute)
(cytoflow.views.kde_2d.Kde2DView attribute)
(cytoflow.views.scatterplot.ScatterplotView attribute)
yfacet (cytoflow.operations.binning.BinningView attribute)
(cytoflow.operations.density.DensityGateView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks1DView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks2DDensityView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks2DView attribute)
(cytoflow.operations.gaussian.GaussianMixture1DView attribute)
(cytoflow.operations.gaussian.GaussianMixture2DView attribute)
(cytoflow.operations.kmeans.KMeans1DView attribute)
(cytoflow.operations.kmeans.KMeans2DView attribute)
(cytoflow.operations.polygon.DensityPolygonSelectionView attribute)
(cytoflow.operations.polygon.ScatterplotPolygonSelectionView attribute)
(cytoflow.operations.quad.DensityQuadSelectionView attribute)
(cytoflow.operations.quad.ScatterplotQuadSelectionView attribute)
(cytoflow.operations.range.RangeSelection attribute)
(cytoflow.operations.range2d.DensityRangeSelection2DView attribute)
(cytoflow.operations.range2d.ScatterplotRangeSelection2DView attribute)
(cytoflow.operations.threshold.ThresholdSelection attribute)
(cytoflow.views.bar_chart.BarChartView attribute)
(cytoflow.views.base_views.BaseView attribute)
(cytoflow.views.densityplot.DensityView attribute)
(cytoflow.views.histogram.HistogramView attribute)
(cytoflow.views.histogram_2d.Histogram2DView attribute)
(cytoflow.views.kde_1d.Kde1DView attribute)
(cytoflow.views.kde_2d.Kde2DView attribute)
(cytoflow.views.parallel_coords.ParallelCoordinatesView attribute)
(cytoflow.views.radviz.RadvizView attribute)
(cytoflow.views.scatterplot.ScatterplotView attribute)
(cytoflow.views.stats_1d.Stats1DView attribute)
(cytoflow.views.stats_2d.Stats2DView attribute)
(cytoflow.views.violin.ViolinPlotView attribute)
yhigh (cytoflow.operations.range2d.Range2DOp attribute)
ylow (cytoflow.operations.range2d.Range2DOp attribute)
yscale (cytoflow.operations.base_op_views.Op2DView attribute)
(cytoflow.operations.density.DensityGateOp attribute)
(cytoflow.operations.density.DensityGateView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks2DDensityView attribute)
(cytoflow.operations.flowpeaks.FlowPeaks2DView attribute)
(cytoflow.operations.gaussian.GaussianMixture2DView attribute)
(cytoflow.operations.kmeans.KMeans2DView attribute)
(cytoflow.operations.polygon.DensityPolygonSelectionView attribute)
(cytoflow.operations.polygon.ScatterplotPolygonSelectionView attribute)
(cytoflow.operations.quad.DensityQuadSelectionView attribute)
(cytoflow.operations.quad.ScatterplotQuadSelectionView attribute)
(cytoflow.operations.range2d.DensityRangeSelection2DView attribute)
(cytoflow.operations.range2d.ScatterplotRangeSelection2DView attribute)
(cytoflow.views.base_views.Base2DStatisticsView attribute)
(cytoflow.views.base_views.Base2DView attribute)
(cytoflow.views.densityplot.DensityView attribute)
(cytoflow.views.histogram_2d.Histogram2DView attribute)
(cytoflow.views.kde_2d.Kde2DView attribute)
(cytoflow.views.scatterplot.ScatterplotView attribute)
(cytoflow.views.stats_2d.Stats2DView attribute)
ystatistic (cytoflow.views.base_views.Base2DStatisticsView attribute)
(cytoflow.views.stats_2d.Stats2DView attribute)
ythreshold (cytoflow.operations.quad.QuadOp attribute)
Z
ZoomableHTMLEditor (class in cytoflowgui.editors.zoomable_html_editor)
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