#!/usr/bin/env python3.8
# coding: latin-1
# (c) Massachusetts Institute of Technology 2015-2018
# (c) Brian Teague 2018-2022
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
"""
cytoflowgui.workflow.views.violin
---------------------------------
"""
from textwrap import dedent
from traits.api import provides, Enum, Bool, Instance, CInt
from cytoflow import ViolinPlotView
from cytoflowgui.workflow.serialization import camel_registry, traits_repr, traits_str
from .view_base import IWorkflowView, WorkflowFacetView, Data1DPlotParams
ViolinPlotView.__repr__ = traits_repr
[docs]class ViolinPlotParams(Data1DPlotParams):
bw = Enum('scott', 'silverman')
scale_plot = Enum('area', 'count', 'width')
scale_hue = Bool(False)
gridsize = CInt(100)
inner = Enum("box", "quartile", None)
split = Bool(False)
[docs]@provides(IWorkflowView)
class ViolinPlotWorkflowView(WorkflowFacetView, ViolinPlotView):
plot_params = Instance(ViolinPlotParams, ())
[docs] def get_notebook_code(self, idx):
view = ViolinPlotView()
view.copy_traits(self, view.copyable_trait_names())
plot_params_str = traits_str(self.plot_params)
return dedent("""
{repr}.plot(ex_{idx}{plot}{plot_params})
"""
.format(repr = repr(view),
idx = idx,
plot = ", plot_name = " + repr(self.current_plot) if self.current_plot else "",
plot_params = ", " + plot_params_str if plot_params_str else ""))
@camel_registry.dumper(ViolinPlotView, 'violin-plot', version = 2)
def _dump(view):
return dict(variable = view.variable,
channel = view.channel,
scale = view.scale,
xfacet = view.xfacet,
yfacet = view.yfacet,
huefacet = view.huefacet,
huescale = view.huescale,
plotfacet = view.plotfacet,
subset_list = view.subset_list,
plot_params = view.plot_params,
current_plot = view.current_plot)
@camel_registry.dumper(ViolinPlotWorkflowView, 'violin-plot', version = 1)
def _dump_v1(view):
return dict(variable = view.variable,
channel = view.channel,
scale = view.scale,
xfacet = view.xfacet,
yfacet = view.yfacet,
huefacet = view.huefacet,
huescale = view.huescale,
plotfacet = view.plotfacet,
subset_list = view.subset_list)
@camel_registry.loader('violin-plot', version = any)
def _load(data, version):
return ViolinPlotWorkflowView(**data)
@camel_registry.dumper(ViolinPlotParams, 'violin-plot-params', version = 1)
def _dump_params(params):
return dict(
# BasePlotParams
title = params.title,
xlabel = params.xlabel,
ylabel = params.ylabel,
huelabel = params.huelabel,
col_wrap = params.col_wrap,
sns_style = params.sns_style,
sns_context = params.sns_context,
legend = params.legend,
sharex = params.sharex,
sharey = params.sharey,
despine = params.despine,
# DataplotParams
min_quantile = params.min_quantile,
max_quantile = params.max_quantile,
# Data1DPlotParams
lim = params.lim,
orientation = params.orientation,
# Violin params
bw = params.bw,
scale_plot = params.scale_plot,
scale_hue = params.scale_hue,
gridsize = params.gridsize,
inner = params.inner,
split = params.split )
@camel_registry.loader('violin-plot-params', version = 1)
def _load_params(data, version):
return ViolinPlotParams(**data)