Source code for cytoflowgui.workflow.views.table

#!/usr/bin/env python3.8
# coding: latin-1

# (c) Massachusetts Institute of Technology 2015-2018
# (c) Brian Teague 2018-2022
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License, or
# (at your option) any later version.
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# GNU General Public License for more details.
# You should have received a copy of the GNU General Public License
# along with this program.  If not, see <>.



import pandas as pd
from textwrap import dedent

from traits.api import provides, Instance

from cytoflow import TableView
import cytoflow.utility as util

from cytoflowgui.workflow.serialization import camel_registry, traits_repr
from .view_base import IWorkflowView, WorkflowByView, BasePlotParams

TableView.__repr__ = traits_repr

[docs]@provides(IWorkflowView) class TableWorkflowView(WorkflowByView, TableView): plot_params = BasePlotParams() # this is unused -- no view, not passed to plot() # return the result for export from the GUI process result = Instance(pd.Series, status = True)
[docs] def plot(self, experiment, **kwargs): if experiment is None: raise util.CytoflowViewError("No experiment specified") super().plot(experiment) self.result = experiment.statistics[self.statistic]
[docs] def get_notebook_code(self, idx): view = TableView() view.copy_traits(self, view.copyable_trait_names()) return dedent(""" {repr}.plot(ex_{idx}) """ .format(repr = repr(view), idx = idx))
### Serialization @camel_registry.dumper(TableWorkflowView, 'table-view', version = 1) def _dump(view): return dict(statistic = view.statistic, row_facet = view.row_facet, subrow_facet = view.subrow_facet, column_facet = view.column_facet, subcolumn_facet = view.subcolumn_facet, subset_list = view.subset_list, current_plot = view.current_plot) @camel_registry.loader('table-view', version = 1) def _load(data, version): data['statistic'] = tuple(data['statistic']) return TableWorkflowView(**data)