#!/usr/bin/env python3.8
# coding: latin-1
# (c) Massachusetts Institute of Technology 2015-2018
# (c) Brian Teague 2018-2022
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
"""
cytoflowgui.workflow.views.stats_1d
-----------------------------------
"""
from textwrap import dedent
from traits.api import provides, Instance, Tuple, Enum, Bool
from cytoflow import Stats1DView
import cytoflow.utility as util
from cytoflowgui.workflow.serialization import camel_registry, traits_repr, traits_str
from .view_base import IWorkflowView, WorkflowByView, Stats1DPlotParams as _Stats1DPlotParams, LINE_STYLES, SCATTERPLOT_MARKERS
Stats1DView.__repr__ = traits_repr
[docs]class Stats1DPlotParams(_Stats1DPlotParams):
variable_lim = Tuple(util.FloatOrNone(None), util.FloatOrNone(None))
linestyle = Enum(LINE_STYLES)
marker = Enum(SCATTERPLOT_MARKERS)
markersize = util.PositiveCFloat(6, allow_zero = False)
capsize = util.PositiveCFloat(0, allow_zero = True)
alpha = util.PositiveCFloat(1.0)
shade_error = Bool(False)
shade_alpha = util.PositiveCFloat(0.2)
[docs]@provides(IWorkflowView)
class Stats1DWorkflowView(WorkflowByView, Stats1DView):
plot_params = Instance(Stats1DPlotParams, ())
[docs] def get_notebook_code(self, idx):
view = Stats1DView()
view.copy_traits(self, view.copyable_trait_names())
plot_params_str = traits_str(self.plot_params)
return dedent("""
{repr}.plot(ex_{idx}{plot}{plot_params})
"""
.format(repr = repr(view),
idx = idx,
plot = ", plot_name = " + repr(self.current_plot) if self.current_plot else "",
plot_params = ", " + plot_params_str if plot_params_str else ""))
### Serialization
@camel_registry.dumper(Stats1DWorkflowView, 'stats-1d', version = 2)
def _dump(view):
return dict(statistic = view.statistic,
variable = view.variable,
scale = view.scale,
variable_scale = view.variable_scale,
xfacet = view.xfacet,
yfacet = view.yfacet,
huefacet = view.huefacet,
huescale = view.huescale,
error_statistic = view.error_statistic,
subset_list = view.subset_list,
plot_params = view.plot_params,
current_plot = view.current_plot)
@camel_registry.dumper(Stats1DWorkflowView, 'stats-1d', version = 1)
def _dump_v1(view):
return dict(statistic = view.statistic,
variable = view.variable,
xscale = view.xscale,
yscale = view.yscale,
xfacet = view.xfacet,
yfacet = view.yfacet,
huefacet = view.huefacet,
huescale = view.huescale,
error_statistic = view.error_statistic,
subset_list = view.subset_list)
@camel_registry.loader('stats-1d', version = 1)
def _load_v1(data, version):
xscale = data.pop('xscale')
yscale = data.pop('yscale')
data['statistic'] = tuple(data['statistic'])
data['error_statistic'] = tuple(data['error_statistic'])
return Stats1DWorkflowView(scale = yscale,
variable_scale = xscale,
**data)
@camel_registry.loader('stats-1d', version = 2)
def _load(data, version):
return Stats1DWorkflowView(**data)
@camel_registry.dumper(Stats1DPlotParams, 'stats-1d-params', version = 1)
def _dump_params(params):
return dict(
# BasePlotParams
title = params.title,
xlabel = params.xlabel,
ylabel = params.ylabel,
huelabel = params.huelabel,
col_wrap = params.col_wrap,
sns_style = params.sns_style,
sns_context = params.sns_context,
legend = params.legend,
sharex = params.sharex,
sharey = params.sharey,
despine = params.despine,
# Base1DStatisticsView
orientation = params.orientation,
lim = params.lim,
# Stats 1D View
variable_lim = params.variable_lim,
linestyle = params.linestyle,
marker = params.marker,
markersize = params.markersize,
capsize = params.capsize,
alpha = params.alpha,
shade_error = params.shade_error,
shade_alpha = params.shade_alpha)
@camel_registry.loader('stats-1d-params', version = any)
def _load_params(data, version):
return Stats1DPlotParams(**data)