Source code for cytoflow.scripts.channel_voltages

#!/usr/bin/env python3.4
# coding: latin-1

# (c) Massachusetts Institute of Technology 2015-2018
# (c) Brian Teague 2018-2021
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 2 of the License, or
# (at your option) any later version.
# 
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
# 
# You should have received a copy of the GNU General Public License
# along with this program.  If not, see <http://www.gnu.org/licenses/>.

'''
cytoflow.scripts.channel_voltages
---------------------------------
'''

import argparse

import cytoflow as flow

[docs]def main(): parser = argparse.ArgumentParser() parser.add_argument("fcs_file", help = "FCS file to analyze") args = parser.parse_args() op = flow.ImportOp(tubes = [flow.Tube(file = args.fcs_file, conditions = {})]) ex = op.apply() for c in ex.channels: m = ex.metadata[c] if "voltage" in m: print("{0}\t{1}".format(c, m["voltage"]))
if __name__ == '__main__': main()